Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38073 * 119.93159 * 2 1 4 4 C 1.38452 * 120.48420 * 179.97438 * 3 2 1 5 5 C 1.38117 * 120.32777 * 0.30259 * 4 3 2 6 6 F 1.35095 * 120.07537 * 179.72611 * 5 4 3 7 7 C 1.40019 * 119.84920 * 359.46936 * 5 4 3 8 8 C 1.47139 * 120.23459 * 180.25805 * 7 5 4 9 9 O 1.21544 * 119.99592 * 270.24582 * 8 7 5 10 10 O 1.34777 * 120.00270 * 90.25231 * 8 7 5 11 11 C 1.45202 * 117.00334 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47393 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47210 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47168 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00058 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00044 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00013 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47017 * 89.99709 * 18 16 14 20 20 H 1.48498 * 109.47123 * 209.99954 * 18 16 14 21 21 H 1.48502 * 109.47011 * 329.99873 * 18 16 14 22 22 C 1.38836 * 119.93066 * 180.02562 * 2 1 3 23 23 N 1.38852 * 120.16558 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47053 * 90.00248 * 1 2 3 25 25 H 1.08995 * 109.47261 * 209.99815 * 1 2 3 26 26 H 1.08992 * 109.47238 * 329.99965 * 1 2 3 27 27 H 1.07998 * 119.76000 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.83309 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46572 * 299.99839 * 11 10 8 30 30 H 1.08998 * 109.47323 * 59.99457 * 11 10 8 31 31 H 1.09008 * 109.46778 * 299.99421 * 12 11 10 32 32 H 1.08998 * 109.47419 * 59.99406 * 12 11 10 33 33 H 1.08999 * 109.46594 * 299.99631 * 13 12 11 34 34 H 1.09003 * 109.47107 * 59.99594 * 13 12 11 35 35 H 0.96998 * 119.99885 * 179.97438 * 17 16 14 36 36 H 0.97000 * 119.99774 * 0.02562 * 23 22 2 37 37 H 0.97000 * 120.00336 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1966 0.0000 4 6 3.5803 1.2099 0.0005 5 6 4.2892 0.0246 -0.0052 6 9 5.6400 0.0436 -0.0103 7 6 3.6047 -1.1969 -0.0004 8 6 4.3514 -2.4647 -0.0007 9 8 4.6598 -2.9880 -1.0535 10 8 4.6933 -3.0458 1.1663 11 6 5.4296 -4.2949 1.0900 12 6 5.7256 -4.7997 2.5036 13 6 6.5021 -6.1156 2.4231 14 6 6.7942 -6.6125 3.8155 15 1 6.4599 -6.0461 4.6722 16 6 7.4883 -7.7900 3.9958 17 7 7.7437 -8.2234 5.2110 18 14 8.0672 -8.7693 2.5141 19 1 9.4267 -8.3176 2.1228 20 1 8.1055 -10.2131 2.8592 21 1 7.1297 -8.5554 1.3825 22 6 2.1997 -1.2032 -0.0005 23 7 1.5074 -2.4069 -0.0016 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6509 2.1289 -0.0004 28 1 4.1086 2.1519 0.0009 29 1 4.8336 -5.0360 0.5573 30 1 6.3670 -4.1322 0.5581 31 1 6.3215 -4.0587 3.0366 32 1 4.7880 -4.9625 3.0350 33 1 5.9067 -6.8567 1.8899 34 1 7.4398 -5.9523 1.8918 35 1 8.2316 -9.0521 5.3378 36 1 0.5374 -2.4084 -0.0024 37 1 1.9938 -3.2461 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767316990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -122.606461 kcal Electronic energy + Delta-G solvation = -21206.462068 eV Core-core repulsion = 17669.610755 eV Total energy + Delta-G solvation = -3536.851313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.14986 -40.66900 -39.33850 -36.50606 -35.02054 -34.09435 -32.86040 -31.82850 -29.87230 -27.64891 -26.87814 -24.77048 -22.87631 -21.98859 -20.81159 -20.21844 -18.32106 -18.14214 -17.62388 -17.02400 -16.41616 -16.17378 -15.76971 -15.58885 -15.45665 -14.72352 -14.25510 -14.20936 -14.04603 -13.60015 -13.30243 -12.78168 -12.60300 -12.53827 -12.32558 -12.17856 -11.95081 -11.81429 -11.07781 -10.99442 -10.98442 -10.70039 -10.47216 -10.03103 -9.83309 -9.74370 -9.26205 -9.04677 -8.57658 -8.00774 -6.07879 -4.07010 0.65895 1.06118 2.01310 2.71913 3.22504 3.27015 3.29347 3.36771 3.39913 4.00161 4.37342 4.42096 4.49436 4.68317 4.77474 5.03285 5.12952 5.22497 5.25254 5.40219 5.42548 5.44809 5.54824 5.70364 5.79178 5.83232 6.03749 6.25994 6.36687 6.39899 6.59086 6.76627 6.89801 7.19401 7.21511 7.30761 7.68525 7.76259 8.48878 8.96406 9.53529 11.05309 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.003269 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.296439 B = 8562.062724 C = 8845.835174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.180 4.180 3 C -0.024 4.024 4 C -0.211 4.211 5 C 0.183 3.817 6 F -0.128 7.128 7 C -0.223 4.223 8 C 0.515 3.485 9 O -0.496 6.496 10 O -0.345 6.345 11 C 0.062 3.938 12 C -0.101 4.101 13 C -0.010 4.010 14 C -0.522 4.522 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.289 3.711 23 N -0.857 5.857 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.407 0.593 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.922 19.309 -12.344 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C -0.043 4.043 4 C -0.232 4.232 5 C 0.163 3.837 6 F -0.106 7.106 7 C -0.230 4.230 8 C 0.357 3.643 9 O -0.383 6.383 10 O -0.261 6.261 11 C -0.011 4.011 12 C -0.139 4.139 13 C -0.048 4.048 14 C -0.560 4.560 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C 0.179 3.821 23 N -0.395 5.395 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.238 0.762 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -15.670 18.947 -12.533 27.597 hybrid contribution 0.670 -1.103 -0.734 1.484 sum -14.999 17.844 -13.267 26.821 Atomic orbital electron populations 1.20596 0.90214 1.02926 1.02310 1.19313 0.96446 0.90956 1.11739 1.20758 0.92814 0.97378 0.93340 1.20782 0.94693 0.96615 1.11073 1.17272 0.76691 0.92481 0.97232 1.91552 1.28665 1.97273 1.93106 1.18427 0.92192 0.90821 1.21592 1.20751 0.76807 0.84169 0.82596 1.90875 1.51038 1.63538 1.32878 1.86714 1.67424 1.39018 1.32970 1.23586 0.95046 0.80973 1.01476 1.21567 1.01553 0.99044 0.91708 1.19523 0.94923 0.91746 0.98569 1.21052 1.36063 1.07480 0.91387 0.90780 1.25015 0.95410 0.97250 0.95721 1.69909 1.40940 1.22414 1.20747 0.86783 0.79660 0.79305 0.83591 1.20161 1.21268 1.19002 1.17042 0.88035 0.87146 0.89879 1.42501 1.09801 1.05208 1.81947 0.91227 0.91941 0.90880 0.84436 0.84117 0.91430 0.91289 0.91415 0.91497 0.96290 0.96660 0.92628 0.76177 0.76770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 9.56 36.00 0.34 -0.18 16 2 C -0.18 -1.48 5.89 -104.46 -0.62 -2.10 16 3 C -0.02 -0.18 9.67 -39.56 -0.38 -0.56 16 4 C -0.21 -1.97 10.00 -39.55 -0.40 -2.37 16 5 C 0.18 2.36 7.29 -38.96 -0.28 2.08 16 6 F -0.13 -1.86 16.83 2.25 0.04 -1.82 16 7 C -0.22 -3.07 5.77 -104.77 -0.60 -3.67 16 8 C 0.51 8.50 5.78 34.34 0.20 8.70 16 9 O -0.50 -9.23 16.90 -19.30 -0.33 -9.55 16 10 O -0.35 -5.99 10.23 -40.70 -0.42 -6.40 16 11 C 0.06 1.12 5.48 37.15 0.20 1.32 16 12 C -0.10 -2.05 5.53 -26.73 -0.15 -2.20 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 15 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C 0.29 3.11 6.74 -83.61 -0.56 2.55 16 23 N -0.86 -7.59 8.89 32.55 0.29 -7.31 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.28 6.54 -51.93 -0.34 -0.06 16 26 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 27 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 28 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 34 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.41 2.37 6.81 -40.82 -0.28 2.09 16 37 H 0.40 3.99 7.68 -40.82 -0.31 3.67 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -33.60 322.92 -6.90 -40.50 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.66 Total: -0.11 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.79 Total: -10.19 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 1.06 Total: -34.39 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.74 Total: -15.96 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.60 -6.90 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767316990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.110 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds