Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38073 * 119.93159 * 2 1 4 4 C 1.38452 * 120.48420 * 179.97438 * 3 2 1 5 5 C 1.38117 * 120.32777 * 0.30259 * 4 3 2 6 6 F 1.35095 * 120.07537 * 179.72611 * 5 4 3 7 7 C 1.40019 * 119.84920 * 359.46936 * 5 4 3 8 8 C 1.47139 * 120.23459 * 180.25805 * 7 5 4 9 9 O 1.21544 * 119.99592 * 270.24582 * 8 7 5 10 10 O 1.34777 * 120.00270 * 90.25231 * 8 7 5 11 11 C 1.45202 * 117.00334 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47393 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47210 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47168 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00058 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00044 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00013 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47017 * 89.99709 * 18 16 14 20 20 H 1.48498 * 109.47123 * 209.99954 * 18 16 14 21 21 H 1.48502 * 109.47011 * 329.99873 * 18 16 14 22 22 C 1.38836 * 119.93066 * 180.02562 * 2 1 3 23 23 N 1.38852 * 120.16558 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47053 * 90.00248 * 1 2 3 25 25 H 1.08995 * 109.47261 * 209.99815 * 1 2 3 26 26 H 1.08992 * 109.47238 * 329.99965 * 1 2 3 27 27 H 1.07998 * 119.76000 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.83309 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46572 * 299.99839 * 11 10 8 30 30 H 1.08998 * 109.47323 * 59.99457 * 11 10 8 31 31 H 1.09008 * 109.46778 * 299.99421 * 12 11 10 32 32 H 1.08998 * 109.47419 * 59.99406 * 12 11 10 33 33 H 1.08999 * 109.46594 * 299.99631 * 13 12 11 34 34 H 1.09003 * 109.47107 * 59.99594 * 13 12 11 35 35 H 0.96998 * 119.99885 * 179.97438 * 17 16 14 36 36 H 0.97000 * 119.99774 * 0.02562 * 23 22 2 37 37 H 0.97000 * 120.00336 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1966 0.0000 4 6 3.5803 1.2099 0.0005 5 6 4.2892 0.0246 -0.0052 6 9 5.6400 0.0436 -0.0103 7 6 3.6047 -1.1969 -0.0004 8 6 4.3514 -2.4647 -0.0007 9 8 4.6598 -2.9880 -1.0535 10 8 4.6933 -3.0458 1.1663 11 6 5.4296 -4.2949 1.0900 12 6 5.7256 -4.7997 2.5036 13 6 6.5021 -6.1156 2.4231 14 6 6.7942 -6.6125 3.8155 15 1 6.4599 -6.0461 4.6722 16 6 7.4883 -7.7900 3.9958 17 7 7.7437 -8.2234 5.2110 18 14 8.0672 -8.7693 2.5141 19 1 9.4267 -8.3176 2.1228 20 1 8.1055 -10.2131 2.8592 21 1 7.1297 -8.5554 1.3825 22 6 2.1997 -1.2032 -0.0005 23 7 1.5074 -2.4069 -0.0016 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6509 2.1289 -0.0004 28 1 4.1086 2.1519 0.0009 29 1 4.8336 -5.0360 0.5573 30 1 6.3670 -4.1322 0.5581 31 1 6.3215 -4.0587 3.0366 32 1 4.7880 -4.9625 3.0350 33 1 5.9067 -6.8567 1.8899 34 1 7.4398 -5.9523 1.8918 35 1 8.2316 -9.0521 5.3378 36 1 0.5374 -2.4084 -0.0024 37 1 1.9938 -3.2461 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767316990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -143.766913 kcal Electronic energy + Delta-G solvation = -21207.379654 eV Core-core repulsion = 17669.610755 eV Total energy + Delta-G solvation = -3537.768899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.12582 -41.81966 -40.25585 -37.90501 -35.98580 -35.73383 -33.99283 -33.46912 -30.68226 -29.43290 -27.46886 -25.98729 -24.45706 -22.78483 -22.18159 -21.76707 -19.23163 -19.09030 -19.02595 -18.65205 -17.80804 -17.46565 -16.76474 -16.38750 -16.34306 -16.31182 -15.58868 -15.43063 -14.85973 -14.79170 -14.60035 -14.33786 -13.98599 -13.84199 -13.13130 -13.06548 -12.94998 -12.89361 -12.65820 -12.47973 -12.21674 -12.09861 -11.79967 -11.69613 -11.60498 -11.48470 -11.40677 -10.80180 -9.85116 -8.72232 -8.32678 -6.38106 -0.14607 0.32100 0.75618 1.35490 1.36294 1.48215 1.51992 2.33538 2.48320 2.54965 3.02300 3.19776 3.42881 3.80414 3.86723 3.91830 3.92891 4.17464 4.26807 4.33298 4.58722 4.64110 4.66661 4.78109 4.89473 4.90159 4.95497 5.08348 5.17981 5.29364 5.38929 5.40757 5.43361 5.58539 5.72781 6.14524 6.22596 6.42008 6.61508 6.69392 7.26408 8.83975 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.003269 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.296439 B = 8562.062724 C = 8845.835174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.172 4.172 3 C -0.013 4.013 4 C -0.203 4.203 5 C 0.149 3.851 6 F -0.148 7.148 7 C -0.259 4.259 8 C 0.520 3.480 9 O -0.524 6.524 10 O -0.352 6.352 11 C 0.069 3.931 12 C -0.091 4.091 13 C -0.008 4.008 14 C -0.536 4.536 15 H 0.035 0.965 16 C 0.006 3.994 17 N -0.949 5.949 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.245 1.245 22 C 0.279 3.721 23 N -0.852 5.852 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.421 0.579 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.899 20.747 -14.235 30.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.177 4.177 3 C -0.032 4.032 4 C -0.224 4.224 5 C 0.129 3.871 6 F -0.127 7.127 7 C -0.267 4.267 8 C 0.364 3.636 9 O -0.413 6.413 10 O -0.268 6.268 11 C -0.004 4.004 12 C -0.129 4.129 13 C -0.045 4.045 14 C -0.574 4.574 15 H 0.053 0.947 16 C -0.191 4.191 17 N -0.589 5.589 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.168 1.168 22 C 0.169 3.831 23 N -0.390 5.390 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.198 0.802 28 H 0.181 0.819 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.255 0.745 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.686 20.407 -14.426 30.616 hybrid contribution 1.171 -1.433 -0.061 1.852 sum -16.515 18.974 -14.487 29.028 Atomic orbital electron populations 1.20719 0.87553 1.04307 1.03521 1.19796 0.98262 0.90096 1.09550 1.21295 0.92092 0.98851 0.90914 1.21142 0.95652 0.96096 1.09490 1.17705 0.76149 0.93565 0.99700 1.91490 1.30184 1.97405 1.93604 1.18519 0.93427 0.89546 1.25187 1.21300 0.76054 0.84620 0.81666 1.90840 1.52335 1.64571 1.33545 1.86708 1.67405 1.38707 1.33970 1.23326 0.95570 0.81858 0.99638 1.21326 1.00898 0.97364 0.93312 1.19443 0.95900 0.93493 0.95693 1.21384 1.35872 1.07424 0.92674 0.94701 1.26004 0.95515 0.98542 0.99056 1.70059 1.42182 1.23285 1.23410 0.85659 0.79700 0.77502 0.79822 1.19206 1.20691 1.16838 1.17294 0.87132 0.88664 0.90036 1.42518 1.10534 1.04500 1.81441 0.89947 0.91357 0.88816 0.80181 0.81903 0.90182 0.91349 0.92263 0.91527 0.95249 0.95872 0.92320 0.74511 0.77520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 9.56 71.23 0.68 0.05 16 2 C -0.17 -2.31 5.89 -19.76 -0.12 -2.43 16 3 C -0.01 -0.15 9.67 22.28 0.22 0.07 16 4 C -0.20 -3.37 10.00 22.29 0.22 -3.14 16 5 C 0.15 3.82 7.29 22.67 0.17 3.98 16 6 F -0.15 -4.47 16.83 44.97 0.76 -3.71 16 7 C -0.26 -7.14 5.77 -19.96 -0.12 -7.26 16 8 C 0.52 17.47 5.78 70.16 0.41 17.88 16 9 O -0.52 -19.86 16.90 19.69 0.33 -19.52 16 10 O -0.35 -12.38 10.23 -56.89 -0.58 -12.96 16 11 C 0.07 2.48 5.48 71.98 0.39 2.87 16 12 C -0.09 -3.73 5.53 30.59 0.17 -3.56 16 13 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 14 C -0.54 -31.33 9.66 25.60 0.25 -31.08 16 15 H 0.03 2.24 7.99 -2.91 -0.02 2.21 16 16 C 0.01 0.35 5.47 84.65 0.46 0.81 16 17 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 18 Si 0.95 44.50 27.47 68.60 1.88 46.38 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 22 C 0.28 5.65 6.74 38.73 0.26 5.91 16 23 N -0.85 -14.11 8.89 -50.93 -0.45 -14.56 16 24 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.07 0.36 6.54 -2.39 -0.02 0.34 16 26 H 0.09 0.24 8.08 -2.39 -0.02 0.22 16 27 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 28 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 34 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 35 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.42 4.10 6.81 -92.71 -0.63 3.47 16 37 H 0.40 7.70 7.68 -92.71 -0.71 6.99 16 Total: -1.00 -75.33 322.92 5.07 -70.27 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -0.29 Total: 9.97 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 3.11 Total: -16.14 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -0.15 Total: -74.28 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.25 Total: -32.49 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.76 Total: -3.71 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -75.33 5.07 -70.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767316990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.501 kcal (2) G-P(sol) polarization free energy of solvation -75.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds