Wall clock time and date at job start Tue Mar 31 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86794 * 120.00118 * 2 1 4 4 H 1.48493 * 109.47266 * 270.72455 * 3 2 1 5 5 H 1.48502 * 109.47387 * 30.72682 * 3 2 1 6 6 H 1.48509 * 109.46965 * 150.72058 * 3 2 1 7 7 C 1.39949 * 119.99450 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00265 * 341.80326 * 7 2 1 9 9 C 1.41398 * 119.99412 * 161.79697 * 7 2 1 10 10 C 1.40734 * 120.24771 * 331.38018 * 9 7 2 11 11 C 1.37597 * 119.74294 * 180.32174 * 10 9 7 12 12 C 1.38657 * 120.25135 * 359.65017 * 11 10 9 13 13 C 1.38615 * 120.49828 * 0.02638 * 12 11 10 14 14 C 1.37642 * 120.24975 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.12589 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47275 * 264.99557 * 15 14 13 17 17 O 1.21290 * 119.99794 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00159 * 180.27214 * 16 15 14 19 19 C 1.39930 * 120.00215 * 175.11172 * 18 16 15 20 20 C 1.38871 * 120.07290 * 215.22118 * 19 18 16 21 21 C 1.38116 * 119.92745 * 179.76373 * 20 19 18 22 22 C 1.38282 * 120.06734 * 0.48638 * 21 20 19 23 23 C 1.38280 * 120.14525 * 359.76879 * 22 21 20 24 24 C 1.38109 * 120.06742 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00222 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.12733 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.87209 * 179.67693 * 11 10 9 28 28 H 1.07999 * 119.74950 * 180.02562 * 12 11 10 29 29 H 1.08003 * 119.87334 * 179.97438 * 13 12 11 30 30 H 1.08998 * 109.47087 * 144.99594 * 15 14 13 31 31 H 1.09000 * 109.47181 * 24.99816 * 15 14 13 32 32 H 0.97000 * 120.00505 * 355.12125 * 18 16 15 33 33 H 1.07996 * 120.03188 * 359.97438 * 20 19 18 34 34 H 1.08003 * 119.96445 * 180.25527 * 21 20 19 35 35 H 1.08003 * 119.92219 * 179.74138 * 22 21 20 36 36 H 1.07997 * 119.96550 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.03641 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4744 2.0552 -1.3999 5 1 1.4475 2.6482 0.7154 6 1 3.5474 1.4357 0.6848 7 6 2.0079 -1.2121 0.0005 8 1 1.5084 -2.1238 0.2930 9 6 3.3688 -1.2429 -0.3820 10 6 3.8704 -0.2957 -1.2941 11 6 5.1949 -0.3394 -1.6642 12 6 6.0361 -1.3072 -1.1367 13 6 5.5544 -2.2409 -0.2325 14 6 4.2328 -2.2168 0.1513 15 6 3.7120 -3.2336 1.1340 16 6 3.0991 -4.3886 0.3846 17 8 3.0870 -4.3864 -0.8283 18 7 2.5601 -5.4214 1.0620 19 6 1.9008 -6.4438 0.3707 20 6 0.7895 -7.0591 0.9319 21 6 0.1381 -8.0646 0.2447 22 6 0.5973 -8.4655 -0.9965 23 6 1.7067 -7.8584 -1.5558 24 6 2.3594 -6.8488 -0.8760 25 1 -0.4851 0.8401 0.0004 26 1 3.2170 0.4590 -1.7062 27 1 5.5809 0.3833 -2.3680 28 1 7.0745 -1.3337 -1.4325 29 1 6.2185 -2.9906 0.1718 30 1 2.9567 -2.7710 1.7694 31 1 4.5337 -3.5962 1.7515 32 1 2.6291 -5.4561 2.0290 33 1 0.4332 -6.7495 1.9032 34 1 -0.7287 -8.5408 0.6789 35 1 0.0886 -9.2548 -1.5299 36 1 2.0631 -8.1741 -2.5252 37 1 3.2260 -6.3752 -1.3132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776726162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:57 Heat of formation + Delta-G solvation = 7.964581 kcal Electronic energy + Delta-G solvation = -20948.836605 eV Core-core repulsion = 17848.416502 eV Total energy + Delta-G solvation = -3100.420103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15138 -38.42691 -37.41578 -34.34177 -33.59611 -31.98108 -30.72981 -30.33468 -29.41328 -26.85586 -24.86913 -22.80554 -22.28532 -21.38647 -20.40683 -19.39641 -17.59158 -17.32937 -16.49065 -16.05808 -15.67551 -15.12309 -14.52166 -14.33480 -14.04929 -13.70701 -13.59596 -13.29838 -13.14964 -12.68865 -12.58159 -12.17291 -11.88935 -11.56240 -11.43647 -11.20275 -11.08259 -10.78429 -10.72507 -10.27843 -10.03082 -9.71299 -9.55109 -9.25476 -9.07902 -8.74358 -7.90243 -7.60963 -7.51697 -6.94102 -4.47804 1.47216 1.57665 2.55220 2.71895 3.12698 3.15078 3.21323 3.31972 3.50147 3.98218 4.01941 4.51768 5.01628 5.08483 5.26835 5.29396 5.53215 5.57537 5.70940 5.78300 5.83759 5.93728 6.07857 6.17942 6.19568 6.26216 6.49933 6.55083 6.59065 6.68556 6.73076 6.76378 6.95577 7.20764 7.26392 7.43124 7.66125 7.73074 7.79005 7.91054 8.14532 8.35905 8.66623 8.68832 8.82354 10.07953 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.005142 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.888411 B = 5443.644920 C = 6284.698490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.084 3.916 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.246 1.246 7 C -0.443 4.443 8 H 0.088 0.912 9 C 0.111 3.889 10 C -0.239 4.239 11 C -0.077 4.077 12 C -0.245 4.245 13 C -0.066 4.066 14 C -0.173 4.173 15 C -0.072 4.072 16 C 0.514 3.486 17 O -0.499 6.499 18 N -0.687 5.687 19 C 0.159 3.841 20 C -0.152 4.152 21 C -0.104 4.104 22 C -0.146 4.146 23 C -0.103 4.103 24 C -0.123 4.123 25 H 0.285 0.715 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 -10.692 4.200 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.135 4.135 3 Si 0.742 3.258 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.170 1.170 7 C -0.471 4.471 8 H 0.106 0.894 9 C 0.108 3.892 10 C -0.258 4.258 11 C -0.095 4.095 12 C -0.264 4.264 13 C -0.085 4.085 14 C -0.174 4.174 15 C -0.111 4.111 16 C 0.303 3.697 17 O -0.371 6.371 18 N -0.333 5.333 19 C 0.064 3.936 20 C -0.173 4.173 21 C -0.123 4.123 22 C -0.165 4.165 23 C -0.122 4.122 24 C -0.143 4.143 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.242 0.758 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.319 -10.500 3.344 11.261 hybrid contribution 0.081 0.766 0.343 0.844 sum 2.400 -9.734 3.687 10.682 Atomic orbital electron populations 1.69712 1.08119 1.30210 1.35033 1.26187 0.94690 1.01789 0.90848 0.86322 0.80744 0.79670 0.79081 1.19591 1.22087 1.16952 1.19426 0.93117 0.95756 1.38806 0.89403 1.17473 0.92552 0.90153 0.89058 1.21079 0.95712 1.04474 1.04583 1.20603 0.93917 0.97105 0.97913 1.20322 0.98263 1.01425 1.06374 1.20427 0.94521 0.96817 0.96697 1.19007 0.93203 1.01322 1.03892 1.20298 1.00623 0.92318 0.97886 1.21404 0.77148 0.82335 0.88796 1.90689 1.54422 1.77914 1.14068 1.43809 1.57009 1.21876 1.10635 1.17857 0.92498 0.89510 0.93745 1.20922 0.95102 0.99614 1.01617 1.20878 0.99339 0.97034 0.95035 1.21056 0.97923 1.01294 0.96217 1.21048 0.95792 0.95853 0.99514 1.21352 1.01521 0.96611 0.94864 0.90504 0.88060 0.89007 0.89002 0.89082 0.87853 0.89976 0.75813 0.85914 0.86083 0.86412 0.86066 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.64 13.93 55.55 0.77 -20.87 16 2 C 0.08 2.20 5.41 -17.34 -0.09 2.11 16 3 Si 0.91 20.96 24.53 -169.99 -4.17 16.79 16 4 H -0.27 -6.09 6.46 56.52 0.37 -5.73 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.25 -5.71 7.02 56.52 0.40 -5.32 16 7 C -0.44 -11.92 8.59 -37.74 -0.32 -12.25 16 8 H 0.09 2.49 6.94 -52.49 -0.36 2.13 16 9 C 0.11 2.83 5.14 -106.82 -0.55 2.28 16 10 C -0.24 -5.98 7.28 -38.87 -0.28 -6.27 16 11 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 12 C -0.24 -5.24 10.05 -39.29 -0.39 -5.63 16 13 C -0.07 -1.41 9.66 -39.66 -0.38 -1.79 16 14 C -0.17 -3.92 4.43 -103.92 -0.46 -4.38 16 15 C -0.07 -1.33 5.19 -29.04 -0.15 -1.48 16 16 C 0.51 9.93 7.27 -10.99 -0.08 9.85 16 17 O -0.50 -11.76 13.50 5.55 0.07 -11.68 16 18 N -0.69 -10.54 5.34 -9.86 -0.05 -10.60 16 19 C 0.16 2.52 6.29 -83.69 -0.53 1.99 16 20 C -0.15 -2.05 9.97 -39.39 -0.39 -2.44 16 21 C -0.10 -1.28 10.04 -39.61 -0.40 -1.67 16 22 C -0.15 -1.81 10.04 -39.55 -0.40 -2.21 16 23 C -0.10 -1.44 10.04 -39.61 -0.40 -1.84 16 24 C -0.12 -2.04 8.69 -39.39 -0.34 -2.38 16 25 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 26 H 0.10 2.53 4.44 -52.49 -0.23 2.30 16 27 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 28 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.10 1.91 7.13 -51.93 -0.37 1.54 16 31 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.41 4.63 8.82 -40.82 -0.36 4.27 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.14 2.53 6.26 -52.48 -0.33 2.20 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -31.37 312.34 -8.45 -39.82 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.21 Total: 10.08 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -5.57 Total: -28.25 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.72 Total: -31.47 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.37 -8.45 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776726162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.782 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds