Wall clock time and date at job start Tue Mar 31 2020 05:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86794 * 120.00118 * 2 1 4 4 H 1.48493 * 109.47266 * 270.72455 * 3 2 1 5 5 H 1.48502 * 109.47387 * 30.72682 * 3 2 1 6 6 H 1.48509 * 109.46965 * 150.72058 * 3 2 1 7 7 C 1.39949 * 119.99450 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00265 * 341.80326 * 7 2 1 9 9 C 1.41398 * 119.99412 * 161.79697 * 7 2 1 10 10 C 1.40734 * 120.24771 * 331.38018 * 9 7 2 11 11 C 1.37597 * 119.74294 * 180.32174 * 10 9 7 12 12 C 1.38657 * 120.25135 * 359.65017 * 11 10 9 13 13 C 1.38615 * 120.49828 * 0.02638 * 12 11 10 14 14 C 1.37642 * 120.24975 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.12589 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47275 * 264.99557 * 15 14 13 17 17 O 1.21290 * 119.99794 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00159 * 180.27214 * 16 15 14 19 19 C 1.39930 * 120.00215 * 175.11172 * 18 16 15 20 20 C 1.38871 * 120.07290 * 215.22118 * 19 18 16 21 21 C 1.38116 * 119.92745 * 179.76373 * 20 19 18 22 22 C 1.38282 * 120.06734 * 0.48638 * 21 20 19 23 23 C 1.38280 * 120.14525 * 359.76879 * 22 21 20 24 24 C 1.38109 * 120.06742 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00222 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.12733 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.87209 * 179.67693 * 11 10 9 28 28 H 1.07999 * 119.74950 * 180.02562 * 12 11 10 29 29 H 1.08003 * 119.87334 * 179.97438 * 13 12 11 30 30 H 1.08998 * 109.47087 * 144.99594 * 15 14 13 31 31 H 1.09000 * 109.47181 * 24.99816 * 15 14 13 32 32 H 0.97000 * 120.00505 * 355.12125 * 18 16 15 33 33 H 1.07996 * 120.03188 * 359.97438 * 20 19 18 34 34 H 1.08003 * 119.96445 * 180.25527 * 21 20 19 35 35 H 1.08003 * 119.92219 * 179.74138 * 22 21 20 36 36 H 1.07997 * 119.96550 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.03641 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4744 2.0552 -1.3999 5 1 1.4475 2.6482 0.7154 6 1 3.5474 1.4357 0.6848 7 6 2.0079 -1.2121 0.0005 8 1 1.5084 -2.1238 0.2930 9 6 3.3688 -1.2429 -0.3820 10 6 3.8704 -0.2957 -1.2941 11 6 5.1949 -0.3394 -1.6642 12 6 6.0361 -1.3072 -1.1367 13 6 5.5544 -2.2409 -0.2325 14 6 4.2328 -2.2168 0.1513 15 6 3.7120 -3.2336 1.1340 16 6 3.0991 -4.3886 0.3846 17 8 3.0870 -4.3864 -0.8283 18 7 2.5601 -5.4214 1.0620 19 6 1.9008 -6.4438 0.3707 20 6 0.7895 -7.0591 0.9319 21 6 0.1381 -8.0646 0.2447 22 6 0.5973 -8.4655 -0.9965 23 6 1.7067 -7.8584 -1.5558 24 6 2.3594 -6.8488 -0.8760 25 1 -0.4851 0.8401 0.0004 26 1 3.2170 0.4590 -1.7062 27 1 5.5809 0.3833 -2.3680 28 1 7.0745 -1.3337 -1.4325 29 1 6.2185 -2.9906 0.1718 30 1 2.9567 -2.7710 1.7694 31 1 4.5337 -3.5962 1.7515 32 1 2.6291 -5.4561 2.0290 33 1 0.4332 -6.7495 1.9032 34 1 -0.7287 -8.5408 0.6789 35 1 0.0886 -9.2548 -1.5299 36 1 2.0631 -8.1741 -2.5252 37 1 3.2260 -6.3752 -1.3132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776726162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:56 Heat of formation + Delta-G solvation = -10.886145 kcal Electronic energy + Delta-G solvation = -20949.654034 eV Core-core repulsion = 17848.416502 eV Total energy + Delta-G solvation = -3101.237532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50549 -39.88527 -38.94841 -35.68547 -35.50389 -33.61466 -32.18171 -31.80010 -30.67677 -28.43220 -26.70554 -24.02580 -23.47121 -23.15260 -21.89198 -20.96892 -19.26809 -18.78252 -17.91086 -17.54166 -17.09666 -16.59216 -16.20174 -15.77011 -15.54923 -15.25811 -15.06162 -14.69204 -14.50642 -14.24311 -13.93146 -13.74931 -13.66663 -13.15076 -12.78518 -12.67601 -12.58654 -12.50252 -12.15452 -12.01821 -11.54912 -11.38477 -11.29558 -10.93120 -10.74826 -9.83956 -9.42393 -9.31651 -9.07531 -8.88142 -6.45984 0.36061 0.49001 0.78556 0.89458 1.26761 1.39419 1.48743 1.71423 2.12373 2.22001 2.64144 2.92586 3.52281 3.93075 4.06762 4.10907 4.27334 4.30900 4.32830 4.45216 4.55156 4.56590 4.65986 4.70622 4.72832 4.92683 4.97118 5.13162 5.15921 5.36475 5.42607 5.45371 5.60909 5.64018 5.67186 5.86089 5.94684 6.04803 6.14628 6.28093 6.44478 6.52923 6.79240 6.90170 7.27925 8.19773 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.005142 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.888411 B = 5443.644920 C = 6284.698490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.047 3.953 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.469 4.469 8 H 0.056 0.944 9 C 0.085 3.915 10 C -0.264 4.264 11 C -0.089 4.089 12 C -0.232 4.232 13 C -0.076 4.076 14 C -0.176 4.176 15 C -0.071 4.071 16 C 0.514 3.486 17 O -0.552 6.552 18 N -0.670 5.670 19 C 0.128 3.872 20 C -0.154 4.154 21 C -0.103 4.103 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.151 4.151 25 H 0.292 0.708 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.425 0.575 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 -11.896 4.953 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.082 3.918 10 C -0.283 4.283 11 C -0.107 4.107 12 C -0.251 4.251 13 C -0.094 4.094 14 C -0.178 4.178 15 C -0.110 4.110 16 C 0.304 3.696 17 O -0.428 6.428 18 N -0.317 5.317 19 C 0.034 3.966 20 C -0.174 4.174 21 C -0.121 4.121 22 C -0.159 4.159 23 C -0.132 4.132 24 C -0.172 4.172 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.264 0.736 33 H 0.162 0.838 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.598 -11.733 4.143 12.953 hybrid contribution -0.177 0.927 0.068 0.947 sum 3.422 -10.805 4.211 12.091 Atomic orbital electron populations 1.69747 1.09154 1.31232 1.37612 1.26817 0.95251 1.04191 0.90455 0.85499 0.79415 0.76758 0.79083 1.19374 1.20483 1.17506 1.19338 0.94213 0.95067 1.41247 0.92608 1.17726 0.92503 0.91708 0.89845 1.21222 0.97047 1.04782 1.05238 1.20979 0.93118 0.98208 0.98402 1.20871 0.99801 0.99828 1.04580 1.20904 0.94423 0.97534 0.96498 1.19498 0.93758 1.00854 1.03673 1.20350 1.02020 0.91368 0.97270 1.21458 0.76936 0.83045 0.88186 1.90668 1.56815 1.79153 1.16173 1.43527 1.55873 1.20853 1.11469 1.18123 0.93972 0.90319 0.94169 1.21242 0.94117 0.99470 1.02563 1.21361 0.99809 0.96142 0.94769 1.21478 0.96871 1.01248 0.96330 1.21307 0.96375 0.95388 1.00166 1.21316 1.01799 0.98166 0.95902 0.89815 0.88973 0.86156 0.85408 0.85423 0.88236 0.85453 0.73645 0.83760 0.82578 0.83133 0.84598 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.71 13.93 21.83 0.30 -47.40 16 2 C 0.05 2.57 5.41 85.26 0.46 3.03 16 3 Si 0.97 44.14 24.53 68.60 1.68 45.82 16 4 H -0.27 -11.94 6.46 99.48 0.64 -11.30 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.25 -11.50 7.02 99.48 0.70 -10.80 16 7 C -0.47 -26.51 8.59 23.46 0.20 -26.31 16 8 H 0.06 3.39 6.94 -2.91 -0.02 3.37 16 9 C 0.08 4.42 5.14 -21.29 -0.11 4.31 16 10 C -0.26 -13.21 7.28 22.73 0.17 -13.05 16 11 C -0.09 -3.85 10.02 22.22 0.22 -3.62 16 12 C -0.23 -9.18 10.05 22.46 0.23 -8.96 16 13 C -0.08 -3.02 9.66 22.22 0.21 -2.81 16 14 C -0.18 -7.92 4.43 -19.41 -0.09 -8.00 16 15 C -0.07 -2.59 5.19 29.10 0.15 -2.44 16 16 C 0.51 20.23 7.27 87.66 0.64 20.87 16 17 O -0.55 -27.13 13.50 -3.06 -0.04 -27.17 16 18 N -0.67 -20.62 5.34 -303.50 -1.62 -22.24 16 19 C 0.13 4.08 6.29 38.15 0.24 4.32 16 20 C -0.15 -3.90 9.97 22.39 0.22 -3.68 16 21 C -0.10 -2.22 10.04 22.25 0.22 -1.99 16 22 C -0.14 -3.14 10.04 22.29 0.22 -2.92 16 23 C -0.11 -3.13 10.04 22.25 0.22 -2.90 16 24 C -0.15 -5.16 8.69 22.39 0.19 -4.97 16 25 H 0.29 14.74 8.30 -92.71 -0.77 13.98 16 26 H 0.09 4.68 4.44 -2.91 -0.01 4.67 16 27 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 28 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 30 H 0.10 3.74 7.13 -2.39 -0.02 3.72 16 31 H 0.13 3.40 8.05 -2.39 -0.02 3.38 16 32 H 0.43 9.32 8.82 -92.71 -0.82 8.50 16 33 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.11 4.31 6.26 -2.91 -0.02 4.29 16 Total: -1.00 -72.08 312.34 3.95 -68.13 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.21 Total: 31.98 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 3.41 Total: -49.12 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.32 Total: -69.64 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.68 Total: 45.82 kcal Total: -72.08 3.95 -68.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776726162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.248 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds