Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38833 * 119.97126 * 2 1 4 4 N 1.38834 * 120.16727 * 359.95798 * 3 2 1 5 5 C 1.40484 * 119.66509 * 179.97438 * 3 2 1 6 6 C 1.47172 * 120.18738 * 179.97438 * 5 3 2 7 7 O 1.21532 * 120.00063 * 354.15068 * 6 5 3 8 8 O 1.34788 * 119.99787 * 174.14772 * 6 5 3 9 9 C 1.45197 * 116.99728 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47249 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47415 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47283 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99805 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00200 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00228 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47425 * 59.99839 * 16 14 12 18 18 H 1.48504 * 109.47272 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47145 * 299.99480 * 16 14 12 20 20 C 1.39872 * 119.62787 * 0.02562 * 5 3 2 21 21 C 1.37608 * 119.94341 * 0.02562 * 20 5 3 22 22 C 1.38245 * 119.98039 * 180.23624 * 2 1 3 23 23 F 1.35094 * 119.81193 * 0.04011 * 22 2 1 24 24 H 1.08998 * 109.47583 * 90.00265 * 1 2 3 25 25 H 1.09003 * 109.46695 * 209.99706 * 1 2 3 26 26 H 1.09004 * 109.47348 * 329.99443 * 1 2 3 27 27 H 0.97000 * 119.99551 * 185.53256 * 4 3 2 28 28 H 0.96994 * 120.00192 * 5.52971 * 4 3 2 29 29 H 1.09007 * 109.46967 * 299.99686 * 9 8 6 30 30 H 1.08999 * 109.47452 * 59.99843 * 9 8 6 31 31 H 1.08999 * 109.46983 * 299.99999 * 10 9 8 32 32 H 1.09007 * 109.47262 * 60.00199 * 10 9 8 33 33 H 1.08998 * 109.46932 * 300.00421 * 11 10 9 34 34 H 1.09007 * 109.46384 * 60.00101 * 11 10 9 35 35 H 0.97003 * 120.00294 * 179.97438 * 15 14 12 36 36 H 1.07997 * 120.03109 * 179.97438 * 20 5 3 37 37 H 1.07999 * 119.83460 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2005 1.2027 0.0000 4 7 1.5093 2.4067 -0.0009 5 6 3.6053 1.1952 0.0005 6 6 4.3521 2.4633 0.0000 7 8 3.7584 3.5182 -0.1082 8 8 5.6947 2.4548 0.1195 9 6 6.3653 3.7427 0.1118 10 6 7.8739 3.5330 0.2559 11 6 8.5806 4.8900 0.2471 12 6 10.0666 4.6835 0.3897 13 1 10.4669 3.6842 0.4774 14 6 10.9150 5.7701 0.4082 15 7 10.4275 6.9868 0.3009 16 14 12.7569 5.5140 0.5842 17 1 13.2528 4.6910 -0.5480 18 1 13.4429 6.8311 0.5758 19 1 13.0396 4.8165 1.8644 20 6 4.2903 -0.0243 0.0005 21 6 3.5870 -1.2071 -0.0005 22 6 2.1978 -1.1975 -0.0049 23 9 1.5181 -2.3649 -0.0106 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9930 3.2435 -0.0819 28 1 0.5427 2.4110 0.0794 29 1 6.1581 4.2545 -0.8281 30 1 6.0011 4.3470 0.9425 31 1 8.0814 3.0210 1.1955 32 1 8.2379 2.9288 -0.5752 33 1 8.3730 5.4016 -0.6927 34 1 8.2167 5.4945 1.0780 35 1 11.0243 7.7514 0.3142 36 1 5.3702 -0.0377 0.0005 37 1 4.1177 -2.1478 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781797886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = -124.062795 kcal Electronic energy + Delta-G solvation = -20872.437687 eV Core-core repulsion = 17335.523222 eV Total energy + Delta-G solvation = -3536.914465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.25787 -40.73434 -39.08649 -36.57205 -34.90836 -33.97039 -32.70117 -31.69499 -29.63574 -27.31234 -26.98329 -24.36489 -22.93068 -22.06550 -20.92254 -20.31690 -18.09572 -18.04621 -17.21455 -16.93126 -16.36376 -16.15146 -15.97433 -15.42843 -15.34620 -14.48859 -14.24618 -14.08760 -13.77048 -13.61103 -13.32973 -12.95273 -12.62877 -12.40652 -12.18163 -12.08843 -11.89530 -11.47059 -10.96965 -10.91364 -10.70237 -10.65849 -10.42698 -10.39512 -9.74775 -9.52718 -9.19304 -9.00014 -8.39717 -7.95662 -6.04725 -4.07914 0.45632 1.17139 2.40687 2.82992 3.31823 3.36186 3.38743 3.47162 3.48662 4.01755 4.35919 4.42112 4.54121 4.70557 4.88864 5.13705 5.22127 5.24349 5.31252 5.49109 5.55181 5.59551 5.68332 5.77574 5.87305 5.97535 6.00385 6.36351 6.51258 6.51864 6.76819 6.95399 7.09393 7.58041 7.59553 7.69386 7.88803 7.93482 8.34390 8.98148 9.56478 11.06708 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037862 B = 0.002757 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.352217 B =10155.157024 C =10858.635184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.225 4.225 3 C 0.312 3.688 4 N -0.847 5.847 5 C -0.225 4.225 6 C 0.521 3.479 7 O -0.528 6.528 8 O -0.349 6.349 9 C 0.069 3.931 10 C -0.109 4.109 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.017 3.983 21 C -0.228 4.228 22 C 0.180 3.820 23 F -0.133 7.133 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.420 0.580 28 H 0.396 0.604 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.150 0.850 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.053 -15.134 -0.714 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.231 4.231 3 C 0.198 3.802 4 N -0.395 5.395 5 C -0.232 4.232 6 C 0.369 3.631 7 O -0.420 6.420 8 O -0.265 6.265 9 C -0.004 4.004 10 C -0.147 4.147 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.002 4.002 21 C -0.249 4.249 22 C 0.160 3.840 23 F -0.111 7.111 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.264 0.736 28 H 0.226 0.774 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.168 0.832 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.103 -14.562 -0.754 24.834 hybrid contribution 0.692 0.214 0.091 0.730 sum -19.411 -14.349 -0.663 24.147 Atomic orbital electron populations 1.20491 0.89793 1.02976 1.02545 1.19153 0.96900 0.90380 1.16620 1.17152 0.89065 0.86524 0.87459 1.43586 1.10307 1.07270 1.78295 1.18583 0.90764 0.92160 1.21689 1.20775 0.81744 0.88427 0.72193 1.90448 1.69030 1.33701 1.48819 1.86557 1.19408 1.37951 1.82578 1.23546 0.93956 0.80643 1.02247 1.21776 0.88723 1.02264 1.01935 1.19045 0.94793 0.89750 0.97669 1.21134 0.91516 0.92890 1.50523 0.92451 1.25027 0.99047 0.95183 0.95187 1.69955 1.35285 0.97938 1.50232 0.86602 0.85057 0.77276 0.78747 1.20163 1.21266 1.20160 1.21131 1.00844 0.89575 0.88644 1.20820 0.91650 0.99901 1.12531 1.17484 0.89777 0.80269 0.96498 1.91490 1.80308 1.46225 1.93079 0.91130 0.90945 0.91669 0.73625 0.77445 0.91381 0.91395 0.92067 0.92067 0.96236 0.96247 0.92821 0.83231 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.42 36.00 0.34 -0.38 16 2 C -0.22 -2.21 5.90 -104.40 -0.62 -2.83 16 3 C 0.31 3.51 6.74 -83.62 -0.56 2.95 16 4 N -0.85 -8.48 8.84 32.54 0.29 -8.20 16 5 C -0.23 -2.86 5.89 -104.81 -0.62 -3.48 16 6 C 0.52 7.99 7.87 34.36 0.27 8.26 16 7 O -0.53 -8.73 13.43 -19.29 -0.26 -8.99 16 8 O -0.35 -5.71 9.48 -40.73 -0.39 -6.10 16 9 C 0.07 1.24 5.48 37.15 0.20 1.45 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.37 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 16 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.02 0.18 9.60 -39.20 -0.38 -0.19 16 21 C -0.23 -2.20 10.00 -39.55 -0.40 -2.59 16 22 C 0.18 1.81 7.24 -39.32 -0.28 1.53 16 23 F -0.13 -1.32 16.45 2.25 0.04 -1.28 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.49 7.63 -51.93 -0.40 0.09 16 26 H 0.06 0.37 6.48 -51.93 -0.34 0.03 16 27 H 0.42 4.96 5.34 -40.95 -0.22 4.74 16 28 H 0.40 2.79 6.78 -40.82 -0.28 2.51 16 29 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.15 1.47 7.62 -52.49 -0.40 1.07 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -30.70 320.50 -7.06 -37.76 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.55 Total: 2.11 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.74 Total: -10.58 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 1.02 Total: -34.18 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.65 Total: -15.09 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.70 -7.06 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781797886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.301 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds