Wall clock time and date at job start Tue Mar 31 2020 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38833 * 119.97126 * 2 1 4 4 N 1.38834 * 120.16727 * 359.95798 * 3 2 1 5 5 C 1.40484 * 119.66509 * 179.97438 * 3 2 1 6 6 C 1.47172 * 120.18738 * 179.97438 * 5 3 2 7 7 O 1.21532 * 120.00063 * 354.15068 * 6 5 3 8 8 O 1.34788 * 119.99787 * 174.14772 * 6 5 3 9 9 C 1.45197 * 116.99728 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47249 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47415 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47283 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99805 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00200 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00228 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47425 * 59.99839 * 16 14 12 18 18 H 1.48504 * 109.47272 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47145 * 299.99480 * 16 14 12 20 20 C 1.39872 * 119.62787 * 0.02562 * 5 3 2 21 21 C 1.37608 * 119.94341 * 0.02562 * 20 5 3 22 22 C 1.38245 * 119.98039 * 180.23624 * 2 1 3 23 23 F 1.35094 * 119.81193 * 0.04011 * 22 2 1 24 24 H 1.08998 * 109.47583 * 90.00265 * 1 2 3 25 25 H 1.09003 * 109.46695 * 209.99706 * 1 2 3 26 26 H 1.09004 * 109.47348 * 329.99443 * 1 2 3 27 27 H 0.97000 * 119.99551 * 185.53256 * 4 3 2 28 28 H 0.96994 * 120.00192 * 5.52971 * 4 3 2 29 29 H 1.09007 * 109.46967 * 299.99686 * 9 8 6 30 30 H 1.08999 * 109.47452 * 59.99843 * 9 8 6 31 31 H 1.08999 * 109.46983 * 299.99999 * 10 9 8 32 32 H 1.09007 * 109.47262 * 60.00199 * 10 9 8 33 33 H 1.08998 * 109.46932 * 300.00421 * 11 10 9 34 34 H 1.09007 * 109.46384 * 60.00101 * 11 10 9 35 35 H 0.97003 * 120.00294 * 179.97438 * 15 14 12 36 36 H 1.07997 * 120.03109 * 179.97438 * 20 5 3 37 37 H 1.07999 * 119.83460 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2005 1.2027 0.0000 4 7 1.5093 2.4067 -0.0009 5 6 3.6053 1.1952 0.0005 6 6 4.3521 2.4633 0.0000 7 8 3.7584 3.5182 -0.1082 8 8 5.6947 2.4548 0.1195 9 6 6.3653 3.7427 0.1118 10 6 7.8739 3.5330 0.2559 11 6 8.5806 4.8900 0.2471 12 6 10.0666 4.6835 0.3897 13 1 10.4669 3.6842 0.4774 14 6 10.9150 5.7701 0.4082 15 7 10.4275 6.9868 0.3009 16 14 12.7569 5.5140 0.5842 17 1 13.2528 4.6910 -0.5480 18 1 13.4429 6.8311 0.5758 19 1 13.0396 4.8165 1.8644 20 6 4.2903 -0.0243 0.0005 21 6 3.5870 -1.2071 -0.0005 22 6 2.1978 -1.1975 -0.0049 23 9 1.5181 -2.3649 -0.0106 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9930 3.2435 -0.0819 28 1 0.5427 2.4110 0.0794 29 1 6.1581 4.2545 -0.8281 30 1 6.0011 4.3470 0.9425 31 1 8.0814 3.0210 1.1955 32 1 8.2379 2.9288 -0.5752 33 1 8.3730 5.4016 -0.6927 34 1 8.2167 5.4945 1.0780 35 1 11.0243 7.7514 0.3142 36 1 5.3702 -0.0377 0.0005 37 1 4.1177 -2.1478 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781797886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:56 Heat of formation + Delta-G solvation = -141.066714 kcal Electronic energy + Delta-G solvation = -20873.175032 eV Core-core repulsion = 17335.523222 eV Total energy + Delta-G solvation = -3537.651810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.03838 -41.82673 -40.07980 -37.84388 -36.04894 -35.58657 -33.77004 -33.34678 -30.54862 -28.92481 -27.87855 -25.75736 -24.43535 -22.85750 -22.17898 -21.94866 -18.99154 -18.88942 -18.61210 -18.21439 -17.77878 -17.66732 -16.78645 -16.49614 -16.22393 -16.18476 -15.68916 -15.17536 -14.58298 -14.47609 -14.28865 -14.09365 -13.95621 -13.88193 -13.65913 -13.19760 -13.01909 -12.79401 -12.52824 -12.41142 -12.18882 -12.07735 -11.77616 -11.69868 -11.41041 -11.40394 -11.22986 -10.56069 -9.82132 -8.76072 -8.21250 -6.32714 -0.44449 0.38026 1.34154 1.42030 1.45299 1.52725 1.60684 2.42064 2.58381 2.68578 3.12745 3.22336 3.57283 3.63288 3.87554 4.01724 4.05528 4.11395 4.36267 4.41588 4.49998 4.71596 4.76279 4.81191 4.84633 4.98266 5.08187 5.10890 5.16971 5.18881 5.34834 5.50183 5.64955 5.73277 5.80886 6.19422 6.27344 6.63390 6.82556 6.83510 7.36854 8.90786 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037862 B = 0.002757 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.352217 B =10155.157024 C =10858.635184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.223 4.223 3 C 0.305 3.695 4 N -0.843 5.843 5 C -0.247 4.247 6 C 0.516 3.484 7 O -0.546 6.546 8 O -0.349 6.349 9 C 0.079 3.921 10 C -0.094 4.094 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.014 3.986 21 C -0.222 4.222 22 C 0.177 3.823 23 F -0.130 7.130 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.414 0.586 28 H 0.409 0.591 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.068 0.932 33 H -0.003 1.003 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.157 0.843 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.336 -17.123 -0.607 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.229 4.229 3 C 0.191 3.809 4 N -0.390 5.390 5 C -0.254 4.254 6 C 0.365 3.635 7 O -0.439 6.439 8 O -0.264 6.264 9 C 0.006 3.994 10 C -0.132 4.132 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.084 0.916 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.004 4.004 21 C -0.243 4.243 22 C 0.157 3.843 23 F -0.108 7.108 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.255 0.745 28 H 0.242 0.758 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.174 0.826 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.423 -16.582 -0.645 26.315 hybrid contribution 0.655 0.780 0.050 1.020 sum -19.768 -15.802 -0.594 25.314 Atomic orbital electron populations 1.20595 0.87842 1.04022 1.03506 1.19400 0.98329 0.89681 1.15466 1.17272 0.88729 0.87326 0.87615 1.43542 1.11076 1.06609 1.77786 1.18601 0.91325 0.91400 1.24058 1.21294 0.81108 0.89380 0.71678 1.90447 1.69097 1.34583 1.49821 1.86529 1.20388 1.36477 1.83045 1.23165 0.92803 0.81487 1.01953 1.21462 0.89883 0.99268 1.02552 1.18927 0.94675 0.92014 0.95464 1.21609 0.92879 0.93404 1.50280 0.91616 1.26002 1.04400 0.94808 0.94680 1.70093 1.37174 0.98902 1.51257 0.85456 0.78633 0.77398 0.79308 1.19028 1.20990 1.19027 1.21222 1.01278 0.89310 0.88614 1.21035 0.91628 1.00337 1.11276 1.17631 0.90084 0.80425 0.96196 1.91500 1.80280 1.46069 1.92994 0.90126 0.90341 0.90248 0.74505 0.75847 0.91727 0.91757 0.91408 0.91351 0.98473 0.98501 0.92688 0.82553 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.42 71.23 0.67 -0.54 16 2 C -0.22 -3.96 5.90 -19.72 -0.12 -4.07 16 3 C 0.31 6.51 6.74 38.72 0.26 6.77 16 4 N -0.84 -16.08 8.84 -50.96 -0.45 -16.53 16 5 C -0.25 -6.09 5.89 -19.99 -0.12 -6.21 16 6 C 0.52 15.78 7.87 70.17 0.55 16.33 16 7 O -0.55 -18.25 13.43 19.73 0.27 -17.98 16 8 O -0.35 -11.32 9.48 -56.99 -0.54 -11.86 16 9 C 0.08 2.89 5.48 71.98 0.39 3.29 16 10 C -0.09 -3.84 5.53 30.59 0.17 -3.67 16 11 C 0.03 1.38 4.97 29.85 0.15 1.53 16 12 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 15 N -0.93 -56.71 13.29 21.44 0.28 -56.42 16 16 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 C 0.01 0.29 9.60 22.52 0.22 0.51 16 21 C -0.22 -3.80 10.00 22.29 0.22 -3.58 16 22 C 0.18 3.18 7.24 22.44 0.16 3.35 16 23 F -0.13 -2.27 16.45 44.97 0.74 -1.53 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.85 7.63 -2.39 -0.02 0.84 16 26 H 0.08 0.70 6.48 -2.39 -0.02 0.68 16 27 H 0.41 9.65 5.34 -94.83 -0.51 9.14 16 28 H 0.41 5.15 6.78 -92.71 -0.63 4.52 16 29 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.16 2.88 7.62 -2.91 -0.02 2.85 16 37 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -65.60 320.50 5.56 -60.04 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -0.02 Total: 14.74 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 3.26 Total: -16.24 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -0.17 Total: -72.96 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.28 Total: -29.85 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.74 Total: -1.53 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.60 5.56 -60.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781797886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.028 kcal (2) G-P(sol) polarization free energy of solvation -65.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds