Wall clock time and date at job start Tue Mar 31 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48497 * 109.47267 * 239.99994 * 3 2 1 5 5 H 1.48505 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46982 * 120.00000 * 3 2 1 7 7 C 1.37874 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47229 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46833 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99807 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99788 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00046 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47069 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46776 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 15 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 H 0.97006 * 120.00265 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46983 * 60.00202 * 9 7 2 25 25 H 1.08999 * 109.47231 * 300.00844 * 9 7 2 26 26 H 1.09005 * 109.47114 * 60.00029 * 10 9 7 27 27 H 1.09007 * 109.47201 * 300.00377 * 10 9 7 28 28 H 1.08994 * 109.47222 * 60.00076 * 11 10 9 29 29 H 1.09003 * 109.46944 * 299.99513 * 11 10 9 30 30 H 0.96999 * 120.00283 * 359.97438 * 12 11 10 31 31 H 1.09005 * 109.47250 * 59.99836 * 15 13 12 32 32 H 1.09007 * 109.47222 * 300.00088 * 15 13 12 33 33 H 1.08994 * 109.46921 * 60.00192 * 16 15 13 34 34 H 1.08994 * 109.47207 * 299.99884 * 16 15 13 35 35 H 1.08994 * 109.47301 * 60.00348 * 17 16 15 36 36 H 1.09003 * 109.46866 * 299.99784 * 17 16 15 37 37 H 1.08001 * 122.53963 * 0.04211 * 19 18 17 38 38 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 39 39 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4326 -6.1005 -0.0006 13 6 1.9834 -7.3712 -0.0005 14 8 0.7910 -7.5929 -0.0004 15 6 2.9628 -8.5166 -0.0004 16 6 2.1978 -9.8416 -0.0009 17 6 3.1922 -11.0045 -0.0002 18 6 2.4388 -12.3096 -0.0014 19 6 2.0653 -12.9547 1.1650 20 6 1.4050 -14.1000 0.9872 21 16 1.2186 -14.4124 -0.7336 22 6 2.0816 -12.9310 -1.1264 23 1 -0.4851 0.8401 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5570 0.8896 26 1 2.8721 -3.6042 0.8895 27 1 2.8722 -3.6042 -0.8905 28 1 0.8542 -5.0445 -0.8913 29 1 0.8536 -5.0451 0.8886 30 1 3.3863 -5.9232 -0.0002 31 1 3.5895 -8.4587 0.8896 32 1 3.5894 -8.4589 -0.8905 33 1 1.5715 -9.8992 -0.8911 34 1 1.5709 -9.8996 0.8888 35 1 3.8182 -10.9468 0.8902 36 1 3.8194 -10.9467 -0.8898 37 1 2.2912 -12.5605 2.1448 38 1 1.0369 -14.7358 1.7789 39 1 2.2868 -12.5763 -2.1256 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783046202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:35 Heat of formation + Delta-G solvation = -40.408224 kcal Electronic energy + Delta-G solvation = -18118.562892 eV Core-core repulsion = 15151.489138 eV Total energy + Delta-G solvation = -2967.073754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.59773 -38.63991 -35.49940 -34.24426 -33.30034 -31.31467 -30.23990 -27.97393 -26.43630 -24.00271 -22.91708 -21.73539 -20.70057 -19.78299 -18.98269 -17.90866 -16.77105 -16.39736 -16.01176 -15.60033 -15.23092 -14.72843 -14.46389 -13.83483 -13.77746 -13.55494 -13.23080 -12.90468 -12.67818 -12.29123 -12.03150 -11.95667 -11.77858 -11.61609 -11.57951 -10.98535 -10.88835 -10.84145 -10.73160 -10.62949 -9.86767 -9.85109 -9.35685 -9.13087 -9.07393 -8.75396 -8.63731 -8.37601 -6.02187 -4.05533 0.73551 1.39570 1.71609 2.41935 2.82414 3.31469 3.36215 3.37643 3.45406 4.43622 4.53418 4.63595 4.77906 4.83967 4.96260 5.15936 5.18787 5.32640 5.33326 5.42049 5.48334 5.51647 5.72559 5.76960 5.78252 5.90300 6.12382 6.16421 6.20298 6.25358 6.51011 6.59763 6.83943 7.00402 7.62665 7.74184 7.75528 7.96342 8.36860 8.44183 9.00943 9.58570 11.09006 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.064142 B = 0.001928 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.426816 B =14516.787390 C =14675.648463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.728 5.728 13 C 0.504 3.496 14 O -0.546 6.546 15 C -0.141 4.141 16 C -0.097 4.097 17 C -0.062 4.062 18 C -0.097 4.097 19 C -0.129 4.129 20 C -0.212 4.212 21 S 0.083 5.917 22 C -0.211 4.211 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.039 -28.077 0.140 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.379 5.379 13 C 0.290 3.710 14 O -0.424 6.424 15 C -0.181 4.181 16 C -0.136 4.136 17 C -0.102 4.102 18 C -0.109 4.109 19 C -0.160 4.160 20 C -0.348 4.348 21 S 0.347 5.653 22 C -0.346 4.346 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.232 0.768 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.158 0.842 38 H 0.181 0.819 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.312 -29.283 -0.716 29.964 hybrid contribution 1.497 2.202 0.835 2.790 sum 7.809 -27.082 0.119 28.185 Atomic orbital electron populations 1.69956 1.06059 1.26812 1.50429 1.25037 0.94872 0.99316 0.95276 0.86634 0.79550 0.83075 0.78575 1.20247 1.21262 1.20252 1.21165 0.92949 0.90961 1.51094 0.92696 1.19028 0.93865 0.90874 0.97645 1.21885 0.99743 0.93407 1.00820 1.21630 0.91946 0.85248 1.01897 1.46258 1.10735 1.06085 1.74854 1.20688 0.89812 0.84189 0.76269 1.90705 1.17104 1.84882 1.49668 1.21697 0.98495 0.93652 1.04291 1.21300 0.97335 0.90839 1.04076 1.20382 0.96839 0.89951 1.02981 1.18956 1.01751 0.98247 0.91958 1.20144 1.00911 0.95345 0.99560 1.25598 1.07650 1.02563 0.98950 1.84286 1.56383 1.23592 1.01032 1.25486 1.07040 0.99566 1.02537 0.92858 0.96289 0.96297 0.92753 0.92762 0.91874 0.91877 0.76842 0.88969 0.89001 0.91038 0.90978 0.90727 0.90871 0.84176 0.81940 0.81901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 12 N -0.73 -10.16 5.56 -60.29 -0.33 -10.50 16 13 C 0.50 7.14 7.83 -10.99 -0.09 7.06 16 14 O -0.55 -10.18 15.98 5.55 0.09 -10.10 16 15 C -0.14 -1.28 5.70 -27.88 -0.16 -1.44 16 16 C -0.10 -0.93 4.49 -26.73 -0.12 -1.05 16 17 C -0.06 -0.45 5.47 -27.88 -0.15 -0.60 16 18 C -0.10 -0.83 5.06 -106.25 -0.54 -1.37 16 19 C -0.13 -1.07 9.98 -41.21 -0.41 -1.48 16 20 C -0.21 -1.65 11.23 29.04 0.33 -1.32 16 21 S 0.08 0.66 23.34 -107.50 -2.51 -1.85 16 22 C -0.21 -1.77 10.98 29.04 0.32 -1.45 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.40 4.33 8.47 -40.82 -0.35 3.98 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 36 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -33.03 346.51 -9.58 -42.61 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.22 Total: -0.62 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.53 Total: -15.09 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.40 Total: -36.63 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.03 -9.58 -42.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783046202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.199 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds