Wall clock time and date at job start Tue Mar 31 2020 05:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48497 * 109.47267 * 239.99994 * 3 2 1 5 5 H 1.48505 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46982 * 120.00000 * 3 2 1 7 7 C 1.37874 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47229 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46833 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99807 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99788 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00046 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47069 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46776 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 15 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 H 0.97006 * 120.00265 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46983 * 60.00202 * 9 7 2 25 25 H 1.08999 * 109.47231 * 300.00844 * 9 7 2 26 26 H 1.09005 * 109.47114 * 60.00029 * 10 9 7 27 27 H 1.09007 * 109.47201 * 300.00377 * 10 9 7 28 28 H 1.08994 * 109.47222 * 60.00076 * 11 10 9 29 29 H 1.09003 * 109.46944 * 299.99513 * 11 10 9 30 30 H 0.96999 * 120.00283 * 359.97438 * 12 11 10 31 31 H 1.09005 * 109.47250 * 59.99836 * 15 13 12 32 32 H 1.09007 * 109.47222 * 300.00088 * 15 13 12 33 33 H 1.08994 * 109.46921 * 60.00192 * 16 15 13 34 34 H 1.08994 * 109.47207 * 299.99884 * 16 15 13 35 35 H 1.08994 * 109.47301 * 60.00348 * 17 16 15 36 36 H 1.09003 * 109.46866 * 299.99784 * 17 16 15 37 37 H 1.08001 * 122.53963 * 0.04211 * 19 18 17 38 38 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 39 39 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4326 -6.1005 -0.0006 13 6 1.9834 -7.3712 -0.0005 14 8 0.7910 -7.5929 -0.0004 15 6 2.9628 -8.5166 -0.0004 16 6 2.1978 -9.8416 -0.0009 17 6 3.1922 -11.0045 -0.0002 18 6 2.4388 -12.3096 -0.0014 19 6 2.0653 -12.9547 1.1650 20 6 1.4050 -14.1000 0.9872 21 16 1.2186 -14.4124 -0.7336 22 6 2.0816 -12.9310 -1.1264 23 1 -0.4851 0.8401 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5570 0.8896 26 1 2.8721 -3.6042 0.8895 27 1 2.8722 -3.6042 -0.8905 28 1 0.8542 -5.0445 -0.8913 29 1 0.8536 -5.0451 0.8886 30 1 3.3863 -5.9232 -0.0002 31 1 3.5895 -8.4587 0.8896 32 1 3.5894 -8.4589 -0.8905 33 1 1.5715 -9.8992 -0.8911 34 1 1.5709 -9.8996 0.8888 35 1 3.8182 -10.9468 0.8902 36 1 3.8194 -10.9467 -0.8898 37 1 2.2912 -12.5605 2.1448 38 1 1.0369 -14.7358 1.7789 39 1 2.2868 -12.5763 -2.1256 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783046202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:34 Heat of formation + Delta-G solvation = -60.487560 kcal Electronic energy + Delta-G solvation = -18119.433597 eV Core-core repulsion = 15151.489138 eV Total energy + Delta-G solvation = -2967.944460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74226 -39.28088 -37.00430 -35.17970 -35.03542 -33.03632 -30.99839 -29.08551 -27.85049 -25.25375 -24.13006 -22.55715 -22.30286 -21.01109 -19.59392 -18.59728 -18.49054 -17.74935 -16.99828 -16.82653 -16.42721 -16.20811 -15.88278 -14.90512 -14.76663 -14.43842 -14.20695 -13.85814 -13.77328 -13.72948 -13.41579 -13.29005 -12.72370 -12.60781 -12.54948 -12.52358 -12.39629 -12.28590 -11.66892 -11.62181 -11.58365 -11.49976 -11.25783 -10.77321 -10.55219 -10.05672 -9.67929 -9.25447 -8.19539 -6.31493 0.13396 0.80895 1.12197 1.41719 1.44981 1.52856 1.71289 1.80400 2.30773 2.43794 3.13905 3.84030 3.92452 4.04768 4.18869 4.19718 4.22993 4.34234 4.55090 4.56197 4.60266 4.74269 4.79329 4.80165 4.94033 4.96668 5.03784 5.11421 5.16855 5.23747 5.41245 5.48126 5.54894 5.59606 5.65453 5.69937 5.83593 6.21629 6.65400 6.86123 7.34581 7.38279 8.92330 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.064142 B = 0.001928 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.426816 B =14516.787390 C =14675.648463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.717 5.717 13 C 0.499 3.501 14 O -0.598 6.598 15 C -0.128 4.128 16 C -0.093 4.093 17 C -0.053 4.053 18 C -0.109 4.109 19 C -0.144 4.144 20 C -0.217 4.217 21 S 0.075 5.925 22 C -0.224 4.224 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.417 0.583 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.153 0.847 38 H 0.181 0.819 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.023 -28.382 0.324 30.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.369 5.369 13 C 0.288 3.712 14 O -0.479 6.479 15 C -0.167 4.167 16 C -0.131 4.131 17 C -0.093 4.093 18 C -0.122 4.122 19 C -0.174 4.174 20 C -0.352 4.352 21 S 0.338 5.662 22 C -0.359 4.359 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.254 0.746 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.171 0.829 38 H 0.198 0.802 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.353 -29.606 -0.532 31.053 hybrid contribution 0.505 2.246 0.781 2.431 sum 9.858 -27.360 0.249 29.083 Atomic orbital electron populations 1.70113 1.07992 1.27868 1.51611 1.26062 0.95777 1.03681 0.94779 0.85443 0.78154 0.77781 0.79305 1.18958 1.21227 1.18960 1.21658 0.93792 0.91964 1.50560 0.91394 1.18956 0.94508 0.93169 0.94928 1.21589 0.98360 0.91732 1.02183 1.21183 0.92169 0.86017 1.00251 1.46051 1.11118 1.05200 1.74580 1.21678 0.90023 0.84994 0.74535 1.90691 1.19776 1.85561 1.51891 1.21735 0.97347 0.90417 1.07239 1.21213 0.97572 0.92333 1.01988 1.20347 0.96212 0.88048 1.04649 1.19217 1.02011 0.98882 0.92060 1.20405 1.01167 0.95613 1.00194 1.25903 1.07365 1.02805 0.99161 1.84286 1.56508 1.23764 1.01626 1.25740 1.07187 0.99750 1.03240 0.92823 0.99133 0.99130 0.91244 0.91268 0.93700 0.93688 0.74551 0.85786 0.85878 0.93282 0.93132 0.88963 0.89225 0.82948 0.80180 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.16 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 11 C 0.13 4.55 5.67 86.38 0.49 5.04 16 12 N -0.72 -18.78 5.56 -463.05 -2.57 -21.35 16 13 C 0.50 13.50 7.83 87.65 0.69 14.19 16 14 O -0.60 -22.68 15.98 -3.05 -0.05 -22.73 16 15 C -0.13 -1.93 5.70 29.85 0.17 -1.76 16 16 C -0.09 -1.64 4.49 30.60 0.14 -1.50 16 17 C -0.05 -0.64 5.47 29.85 0.16 -0.47 16 18 C -0.11 -1.72 5.06 -20.92 -0.11 -1.83 16 19 C -0.14 -2.20 9.98 21.22 0.21 -1.98 16 20 C -0.22 -3.16 11.23 66.72 0.75 -2.41 16 21 S 0.07 1.15 23.34 -56.49 -1.32 -0.17 16 22 C -0.22 -3.56 10.98 66.72 0.73 -2.83 16 23 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 24 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 26 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.42 7.70 8.47 -92.71 -0.79 6.92 16 31 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 34 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.09 0.81 8.13 -2.39 -0.02 0.79 16 36 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 37 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -73.83 346.51 2.85 -70.99 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.24 Total: 10.51 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.24 Total: -25.79 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.29 Total: -78.51 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.32 Total: -0.17 kcal Total: -73.83 2.85 -70.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783046202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.498 kcal (2) G-P(sol) polarization free energy of solvation -73.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds