Wall clock time and date at job start Tue Mar 31 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46604 * 2 1 4 4 C 1.52999 * 109.47177 * 119.99474 * 2 1 3 5 5 H 1.08999 * 109.47085 * 184.99818 * 4 2 1 6 6 F 1.39900 * 109.47287 * 305.00761 * 4 2 1 7 7 C 1.50706 * 109.46814 * 65.00399 * 4 2 1 8 8 O 1.21292 * 119.99973 * 315.00035 * 7 4 2 9 9 N 1.34771 * 119.99998 * 135.27425 * 7 4 2 10 10 C 1.39925 * 119.99967 * 174.51948 * 9 7 4 11 11 C 1.38965 * 120.03603 * 326.15401 * 10 9 7 12 12 C 1.38159 * 120.06702 * 179.72265 * 11 10 9 13 13 C 1.38173 * 120.13592 * 0.55415 * 12 11 10 14 14 C 1.38905 * 120.07164 * 359.72540 * 13 12 11 15 15 O 1.35752 * 120.03011 * 179.97438 * 14 13 12 16 16 C 1.34834 * 116.99741 * 185.92557 * 15 14 13 17 17 H 1.08003 * 120.00002 * 5.40285 * 16 15 14 18 18 C 1.38657 * 120.00030 * 185.40205 * 16 15 14 19 19 N 1.31559 * 119.99786 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00086 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46956 * 89.99926 * 20 18 16 22 22 H 1.48500 * 109.47352 * 210.00079 * 20 18 16 23 23 H 1.48498 * 109.47117 * 330.00347 * 20 18 16 24 24 C 1.38715 * 120.03507 * 146.43530 * 10 9 7 25 25 H 1.08994 * 109.47376 * 299.99727 * 1 2 3 26 26 H 1.09005 * 109.47001 * 60.00167 * 1 2 3 27 27 H 1.08998 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47376 * 240.00273 * 2 1 3 29 29 H 1.09007 * 109.46805 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47393 * 299.99674 * 3 2 1 31 31 H 1.09002 * 109.47326 * 59.99948 * 3 2 1 32 32 H 0.97005 * 120.00158 * 354.51303 * 9 7 4 33 33 H 1.08000 * 119.96184 * 359.97438 * 11 10 9 34 34 H 1.07997 * 119.92963 * 180.25135 * 12 11 10 35 35 H 1.07996 * 119.95877 * 179.73993 * 13 12 11 36 36 H 0.96998 * 119.99695 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.07244 * 359.96756 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1263 -0.6442 1.2952 6 9 1.4821 -0.1314 2.3886 7 6 1.6414 -2.1732 1.1890 8 8 0.5142 -2.4796 0.8621 9 7 2.5357 -3.1312 1.5035 10 6 2.1355 -4.4708 1.5590 11 6 0.8550 -4.7970 1.9891 12 6 0.4573 -6.1192 2.0388 13 6 1.3346 -7.1217 1.6721 14 6 2.6178 -6.8025 1.2468 15 8 3.4793 -7.7882 0.8873 16 6 4.7450 -7.4211 0.6025 17 1 5.0565 -6.3975 0.7495 18 6 5.6469 -8.3578 0.1210 19 7 5.2673 -9.6046 -0.0585 20 14 7.4003 -7.8491 -0.2742 21 1 8.2488 -8.0189 0.9327 22 1 7.9265 -8.6985 -1.3728 23 1 7.4194 -6.4256 -0.6964 24 6 3.0186 -5.4751 1.1904 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.4569 -2.8920 1.6912 33 1 0.1687 -4.0159 2.2810 34 1 -0.5397 -6.3699 2.3695 35 1 1.0221 -8.1545 1.7160 36 1 5.8983 -10.2599 -0.3950 37 1 4.0156 -5.2245 0.8596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784062512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:00 Heat of formation + Delta-G solvation = -89.887997 kcal Electronic energy + Delta-G solvation = -21603.135768 eV Core-core repulsion = 18067.703234 eV Total energy + Delta-G solvation = -3535.432534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.09693 -40.27826 -38.74116 -36.67070 -35.40718 -34.39919 -32.29166 -29.87258 -28.92335 -27.49777 -27.26332 -25.34005 -22.59860 -21.89647 -20.69144 -20.13914 -18.24322 -18.01404 -17.31555 -16.69808 -16.09252 -15.50117 -15.10759 -15.04832 -14.60786 -14.23073 -13.96426 -13.88321 -13.60896 -13.37651 -13.14181 -12.99557 -12.52036 -12.29284 -12.17017 -11.82010 -11.61326 -11.43799 -11.17172 -11.11033 -10.98677 -10.91572 -10.86487 -10.49974 -9.91218 -9.63241 -9.33627 -8.85572 -7.82739 -7.22795 -6.49429 -4.09493 1.78784 2.29399 2.62379 2.91319 3.08540 3.09100 3.13794 3.91604 4.12039 4.30092 4.39286 4.52007 4.57900 4.97193 5.05275 5.10694 5.22169 5.28614 5.47507 5.63409 5.64768 5.76630 5.82558 5.91396 5.95496 6.05955 6.13534 6.20493 6.41179 6.57208 6.85661 6.90818 7.05238 7.24671 7.35761 7.52649 7.72523 7.94062 8.09246 8.95697 9.65467 10.68519 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004109 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.394518 B = 6813.344847 C = 7816.155551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.088 3.912 5 H 0.100 0.900 6 F -0.187 7.187 7 C 0.489 3.511 8 O -0.494 6.494 9 N -0.660 5.660 10 C 0.175 3.825 11 C -0.204 4.204 12 C -0.062 4.062 13 C -0.198 4.198 14 C 0.168 3.832 15 O -0.175 6.175 16 C -0.394 4.394 17 H 0.090 0.910 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.254 4.254 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.408 0.592 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.271 0.729 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 17.660 1.492 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.129 4.129 3 C -0.206 4.206 4 C 0.048 3.952 5 H 0.117 0.883 6 F -0.168 7.168 7 C 0.274 3.726 8 O -0.367 6.367 9 N -0.305 5.305 10 C 0.083 3.917 11 C -0.225 4.225 12 C -0.081 4.081 13 C -0.217 4.217 14 C 0.113 3.887 15 O -0.078 6.078 16 C -0.470 4.470 17 H 0.107 0.893 18 C -0.164 4.164 19 N -0.495 5.495 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.193 1.193 24 C -0.275 4.275 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.244 0.756 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.972 17.033 1.182 17.530 hybrid contribution 1.495 0.473 -0.077 1.570 sum -2.477 17.506 1.104 17.715 Atomic orbital electron populations 1.22127 0.93109 1.05494 1.01552 1.21563 0.98783 0.96776 0.95812 1.21857 1.00956 0.94961 1.02805 1.21601 0.99217 0.89433 0.84923 0.88254 1.92867 1.87577 1.84432 1.51905 1.21005 0.86062 0.87721 0.77851 1.90652 1.19697 1.82475 1.43907 1.43561 1.13332 1.05738 1.67873 1.17403 0.94667 0.81408 0.98256 1.20531 0.96047 0.96547 1.09375 1.20535 0.98112 0.91790 0.97693 1.20276 0.92741 0.99592 1.09115 1.19078 0.90229 0.87454 0.91889 1.84026 1.19872 1.30215 1.73700 1.21269 0.83236 0.97111 1.45380 0.89252 1.25284 1.00000 0.94868 0.96282 1.70035 1.35790 1.01877 1.41848 0.85723 0.80562 0.78646 0.78529 1.19844 1.20214 1.19302 1.20816 1.01791 0.92043 1.12861 0.92477 0.92746 0.88696 0.89193 0.92381 0.91707 0.91933 0.75634 0.86366 0.86491 0.86269 0.91952 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.71 37.16 0.32 -1.52 16 2 C -0.11 -1.07 2.75 -90.62 -0.25 -1.32 16 3 C -0.15 -1.13 9.11 37.16 0.34 -0.79 16 4 C 0.09 0.93 3.46 -27.88 -0.10 0.83 16 5 H 0.10 0.73 7.98 -51.93 -0.41 0.31 16 6 F -0.19 -2.29 16.03 2.25 0.04 -2.25 16 7 C 0.49 6.97 6.90 -10.99 -0.08 6.89 16 8 O -0.49 -8.55 11.51 5.55 0.06 -8.49 16 9 N -0.66 -9.60 5.34 -9.88 -0.05 -9.65 16 10 C 0.18 3.28 6.27 -83.72 -0.52 2.75 16 11 C -0.20 -3.87 8.65 -39.34 -0.34 -4.21 16 12 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 13 C -0.20 -4.18 9.99 -39.36 -0.39 -4.57 16 14 C 0.17 4.00 6.64 -39.14 -0.26 3.74 16 15 O -0.17 -4.90 9.76 0.03 0.00 -4.90 16 16 C -0.39 -10.72 9.44 30.89 0.29 -10.42 16 17 H 0.09 2.22 5.30 -52.48 -0.28 1.94 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 20 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.25 -5.36 9.04 -39.21 -0.35 -5.71 16 25 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.31 5.25 -51.93 -0.27 1.04 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 32 H 0.41 4.52 8.70 -40.82 -0.36 4.16 16 33 H 0.12 2.20 6.45 -52.49 -0.34 1.86 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 37 H 0.13 2.68 5.71 -52.49 -0.30 2.38 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -31.82 315.68 -5.74 -37.55 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.44 Total: 7.07 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.83 Total: -14.91 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.71 Total: -33.74 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.06 Total: -13.38 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.82 -5.74 -37.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784062512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.334 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds