Wall clock time and date at job start Tue Mar 31 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46604 * 2 1 4 4 C 1.52999 * 109.47177 * 119.99474 * 2 1 3 5 5 H 1.08999 * 109.47085 * 184.99818 * 4 2 1 6 6 F 1.39900 * 109.47287 * 305.00761 * 4 2 1 7 7 C 1.50706 * 109.46814 * 65.00399 * 4 2 1 8 8 O 1.21292 * 119.99973 * 315.00035 * 7 4 2 9 9 N 1.34771 * 119.99998 * 135.27425 * 7 4 2 10 10 C 1.39925 * 119.99967 * 174.51948 * 9 7 4 11 11 C 1.38965 * 120.03603 * 326.15401 * 10 9 7 12 12 C 1.38159 * 120.06702 * 179.72265 * 11 10 9 13 13 C 1.38173 * 120.13592 * 0.55415 * 12 11 10 14 14 C 1.38905 * 120.07164 * 359.72540 * 13 12 11 15 15 O 1.35752 * 120.03011 * 179.97438 * 14 13 12 16 16 C 1.34834 * 116.99741 * 185.92557 * 15 14 13 17 17 H 1.08003 * 120.00002 * 5.40285 * 16 15 14 18 18 C 1.38657 * 120.00030 * 185.40205 * 16 15 14 19 19 N 1.31559 * 119.99786 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00086 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46956 * 89.99926 * 20 18 16 22 22 H 1.48500 * 109.47352 * 210.00079 * 20 18 16 23 23 H 1.48498 * 109.47117 * 330.00347 * 20 18 16 24 24 C 1.38715 * 120.03507 * 146.43530 * 10 9 7 25 25 H 1.08994 * 109.47376 * 299.99727 * 1 2 3 26 26 H 1.09005 * 109.47001 * 60.00167 * 1 2 3 27 27 H 1.08998 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47376 * 240.00273 * 2 1 3 29 29 H 1.09007 * 109.46805 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47393 * 299.99674 * 3 2 1 31 31 H 1.09002 * 109.47326 * 59.99948 * 3 2 1 32 32 H 0.97005 * 120.00158 * 354.51303 * 9 7 4 33 33 H 1.08000 * 119.96184 * 359.97438 * 11 10 9 34 34 H 1.07997 * 119.92963 * 180.25135 * 12 11 10 35 35 H 1.07996 * 119.95877 * 179.73993 * 13 12 11 36 36 H 0.96998 * 119.99695 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.07244 * 359.96756 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1263 -0.6442 1.2952 6 9 1.4821 -0.1314 2.3886 7 6 1.6414 -2.1732 1.1890 8 8 0.5142 -2.4796 0.8621 9 7 2.5357 -3.1312 1.5035 10 6 2.1355 -4.4708 1.5590 11 6 0.8550 -4.7970 1.9891 12 6 0.4573 -6.1192 2.0388 13 6 1.3346 -7.1217 1.6721 14 6 2.6178 -6.8025 1.2468 15 8 3.4793 -7.7882 0.8873 16 6 4.7450 -7.4211 0.6025 17 1 5.0565 -6.3975 0.7495 18 6 5.6469 -8.3578 0.1210 19 7 5.2673 -9.6046 -0.0585 20 14 7.4003 -7.8491 -0.2742 21 1 8.2488 -8.0189 0.9327 22 1 7.9265 -8.6985 -1.3728 23 1 7.4194 -6.4256 -0.6964 24 6 3.0186 -5.4751 1.1904 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.4569 -2.8920 1.6912 33 1 0.1687 -4.0159 2.2810 34 1 -0.5397 -6.3699 2.3695 35 1 1.0221 -8.1545 1.7160 36 1 5.8983 -10.2599 -0.3950 37 1 4.0156 -5.2245 0.8596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784062512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:00 Heat of formation + Delta-G solvation = -110.066816 kcal Electronic energy + Delta-G solvation = -21604.010788 eV Core-core repulsion = 18067.703234 eV Total energy + Delta-G solvation = -3536.307554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.00333 -41.62119 -40.38444 -38.26766 -36.30435 -35.76104 -34.24136 -31.32079 -30.53817 -28.60198 -28.03240 -27.25945 -23.91553 -23.54206 -21.90427 -21.20539 -19.89479 -19.44764 -18.68269 -17.84345 -17.12087 -16.90672 -16.71913 -16.34803 -16.02158 -15.76605 -15.54276 -15.31317 -14.76396 -14.59769 -14.27575 -14.20288 -13.86282 -13.57483 -13.26689 -13.18140 -12.94633 -12.75212 -12.62139 -12.49657 -12.16896 -12.10947 -11.89812 -11.70809 -11.44613 -11.34021 -10.77203 -10.55435 -9.40948 -8.92710 -8.46454 -6.15601 0.29967 0.65503 1.33072 1.37184 1.47416 1.54582 1.76251 2.18381 2.81648 3.15042 3.22729 3.41229 3.47664 3.62992 3.77673 4.09020 4.23849 4.28923 4.40216 4.40534 4.55436 4.60149 4.64438 4.80217 4.97865 4.98914 5.03341 5.10218 5.13327 5.31907 5.36197 5.37590 5.53090 5.64178 5.64869 6.00798 6.11071 6.29690 6.92322 6.97829 7.76624 8.76558 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004109 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.394518 B = 6813.344847 C = 7816.155551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.094 3.906 5 H 0.143 0.857 6 F -0.195 7.195 7 C 0.486 3.514 8 O -0.526 6.526 9 N -0.653 5.653 10 C 0.183 3.817 11 C -0.200 4.200 12 C -0.051 4.051 13 C -0.212 4.212 14 C 0.135 3.865 15 O -0.226 6.226 16 C -0.415 4.415 17 H 0.105 0.895 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.249 1.249 24 C -0.256 4.256 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.426 0.574 33 H 0.128 0.872 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 20.847 1.639 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.130 4.130 3 C -0.201 4.201 4 C 0.055 3.945 5 H 0.160 0.840 6 F -0.176 7.176 7 C 0.273 3.727 8 O -0.401 6.401 9 N -0.299 5.299 10 C 0.089 3.911 11 C -0.221 4.221 12 C -0.070 4.070 13 C -0.232 4.232 14 C 0.083 3.917 15 O -0.132 6.132 16 C -0.490 4.490 17 H 0.123 0.877 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.172 1.172 24 C -0.277 4.277 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.265 0.735 33 H 0.146 0.854 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.195 20.289 1.356 20.584 hybrid contribution 0.967 -0.349 -0.043 1.029 sum -2.228 19.940 1.313 20.107 Atomic orbital electron populations 1.22076 0.94548 1.03644 1.01979 1.21625 0.97613 0.98294 0.95484 1.21831 1.02083 0.93064 1.03088 1.21781 1.01521 0.86293 0.84952 0.83999 1.92858 1.87994 1.84225 1.52473 1.21808 0.85344 0.89112 0.76451 1.90657 1.21166 1.83291 1.45006 1.43562 1.14666 1.04070 1.67647 1.17427 0.94087 0.83015 0.96582 1.20835 0.96225 0.96917 1.08099 1.20911 0.99110 0.91040 0.95931 1.20498 0.92473 1.00536 1.09648 1.19600 0.90904 0.88216 0.92957 1.83994 1.20777 1.32290 1.76125 1.21834 0.83626 0.98068 1.45519 0.87734 1.26609 1.04929 0.94639 0.95777 1.70189 1.37791 1.03498 1.44305 0.84584 0.74023 0.79119 0.78485 1.18787 1.19962 1.17225 1.20853 1.02356 0.91620 1.12898 0.92955 0.91480 0.91534 0.88746 0.90565 0.90864 0.92275 0.73482 0.85422 0.82880 0.86217 0.91826 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 8.71 71.98 0.63 -2.79 16 2 C -0.11 -1.84 2.75 -10.79 -0.03 -1.86 16 3 C -0.14 -1.65 9.11 71.98 0.66 -1.00 16 4 C 0.09 1.67 3.46 29.85 0.10 1.77 16 5 H 0.14 1.38 7.98 -2.39 -0.02 1.36 16 6 F -0.19 -4.20 16.03 44.97 0.72 -3.48 16 7 C 0.49 12.68 6.90 87.66 0.61 13.28 16 8 O -0.53 -17.43 11.51 -3.07 -0.04 -17.47 16 9 N -0.65 -17.34 5.34 -303.55 -1.62 -18.96 16 10 C 0.18 6.57 6.27 38.14 0.24 6.81 16 11 C -0.20 -7.22 8.65 22.43 0.19 -7.03 16 12 C -0.05 -1.84 10.03 22.24 0.22 -1.62 16 13 C -0.21 -9.06 9.99 22.41 0.22 -8.84 16 14 C 0.13 6.59 6.64 22.56 0.15 6.74 16 15 O -0.23 -13.25 9.76 -22.80 -0.22 -13.47 16 16 C -0.41 -23.24 9.44 67.92 0.64 -22.60 16 17 H 0.11 5.25 5.30 -2.91 -0.02 5.23 16 18 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 19 N -0.92 -55.39 13.67 21.61 0.30 -55.09 16 20 Si 1.02 40.99 29.55 68.60 2.03 43.01 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 24 C -0.26 -10.76 9.04 22.51 0.20 -10.56 16 25 H 0.05 1.10 7.68 -2.39 -0.02 1.08 16 26 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.07 1.79 5.25 -2.39 -0.01 1.77 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.74 7.94 -2.39 -0.02 0.72 16 32 H 0.43 8.09 8.70 -92.70 -0.81 7.28 16 33 H 0.13 4.45 6.45 -2.91 -0.02 4.43 16 34 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 36 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 37 H 0.13 5.41 5.71 -2.91 -0.02 5.39 16 Total: -1.00 -72.66 315.68 5.77 -66.90 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.30 Total: 26.99 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.30 Total: -28.43 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.32 Total: -74.05 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.26 Total: -30.94 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.72 Total: -3.48 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -72.66 5.77 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784062512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.171 kcal (2) G-P(sol) polarization free energy of solvation -72.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds