Wall clock time and date at job start Tue Mar 31 2020 06:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47105 * 2 1 4 4 C 1.53004 * 109.47333 * 119.99530 * 2 1 3 5 5 H 1.08994 * 109.47288 * 305.18870 * 4 2 1 6 6 F 1.39902 * 109.47132 * 185.18996 * 4 2 1 7 7 C 1.50701 * 109.46803 * 65.19153 * 4 2 1 8 8 O 1.21290 * 120.00173 * 48.61079 * 7 4 2 9 9 N 1.34777 * 119.99985 * 228.60747 * 7 4 2 10 10 C 1.39921 * 120.00108 * 175.92910 * 9 7 4 11 11 C 1.38964 * 120.03787 * 215.25252 * 10 9 7 12 12 C 1.38154 * 120.06416 * 179.97438 * 11 10 9 13 13 C 1.38165 * 120.14165 * 359.74129 * 12 11 10 14 14 C 1.38904 * 120.07353 * 0.50861 * 13 12 11 15 15 O 1.35750 * 120.03651 * 179.76832 * 14 13 12 16 16 C 1.34824 * 117.00196 * 354.01866 * 15 14 13 17 17 H 1.08005 * 120.00046 * 5.05125 * 16 15 14 18 18 C 1.38645 * 120.00221 * 185.04297 * 16 15 14 19 19 N 1.31553 * 120.00409 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00142 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46966 * 90.00380 * 20 18 16 22 22 H 1.48498 * 109.47126 * 210.00642 * 20 18 16 23 23 H 1.48507 * 109.47042 * 330.00351 * 20 18 16 24 24 C 1.38712 * 120.03141 * 35.23049 * 10 9 7 25 25 H 1.08997 * 109.47194 * 60.00336 * 1 2 3 26 26 H 1.09007 * 109.46623 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47061 * 299.99665 * 1 2 3 28 28 H 1.08992 * 109.47461 * 240.00031 * 2 1 3 29 29 H 1.08992 * 109.47540 * 185.00611 * 3 2 1 30 30 H 1.09000 * 109.46798 * 305.00632 * 3 2 1 31 31 H 1.09000 * 109.47040 * 65.00150 * 3 2 1 32 32 H 0.97000 * 119.99721 * 355.93201 * 9 7 4 33 33 H 1.07993 * 119.96496 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.92759 * 180.02562 * 12 11 10 35 35 H 1.08006 * 119.96726 * 180.25735 * 13 12 11 36 36 H 0.97000 * 120.00747 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.07385 * 0.04115 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6029 -0.2638 2.1368 6 9 3.4340 -0.6187 1.3105 7 6 1.6454 -2.1742 1.1868 8 8 1.8512 -2.8157 0.1782 9 7 1.0639 -2.7610 2.2517 10 6 0.6202 -4.0852 2.1652 11 6 -0.5310 -4.4783 2.8369 12 6 -0.9699 -5.7855 2.7514 13 6 -0.2693 -6.7045 1.9941 14 6 0.8851 -6.3191 1.3245 15 8 1.5755 -7.2238 0.5845 16 6 1.1595 -8.5051 0.6399 17 1 0.2642 -8.7590 1.1880 18 6 1.8810 -9.4968 -0.0068 19 7 2.9717 -9.1877 -0.6742 20 14 1.3043 -11.2720 0.0694 21 1 0.3877 -11.5439 -1.0669 22 1 2.4781 -12.1778 -0.0137 23 1 0.5886 -11.5054 1.3495 24 6 1.3288 -5.0068 1.4085 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1262 1.4440 -0.0897 30 1 1.6053 1.9816 -0.8418 31 1 1.7517 1.9299 0.9314 32 1 0.9530 -2.2653 3.0780 33 1 -1.0831 -3.7613 3.4262 34 1 -1.8652 -6.0886 3.2740 35 1 -0.6173 -7.7247 1.9259 36 1 3.4767 -9.8816 -1.1264 37 1 2.2240 -4.7039 0.8858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784062513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:03 Heat of formation + Delta-G solvation = -91.853272 kcal Electronic energy + Delta-G solvation = -21605.625334 eV Core-core repulsion = 18070.107579 eV Total energy + Delta-G solvation = -3535.517755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.01344 -40.21768 -38.65422 -36.67987 -35.63155 -34.20299 -32.25540 -29.85321 -28.93026 -27.50925 -27.11351 -25.28436 -22.76341 -21.60561 -20.84474 -20.19780 -18.31200 -17.95524 -17.13977 -16.53336 -16.05710 -15.31628 -15.09979 -14.94635 -14.76812 -14.31484 -14.18296 -13.68011 -13.50852 -13.23353 -13.01491 -12.83394 -12.57937 -12.44951 -12.34748 -11.74282 -11.54925 -11.37706 -11.30665 -11.22366 -11.01785 -10.85984 -10.79840 -10.46303 -9.85407 -9.72388 -9.19061 -8.82563 -7.76670 -7.21747 -6.42237 -4.01770 1.88211 2.30923 2.65151 2.94384 3.14899 3.15099 3.20159 3.97490 4.10548 4.31314 4.41550 4.54719 4.60560 4.87416 5.11838 5.20220 5.26921 5.31897 5.38779 5.54985 5.59085 5.60199 5.78620 5.81783 6.00013 6.00507 6.05942 6.17173 6.34925 6.61737 6.80334 6.99908 7.05077 7.32436 7.44790 7.56143 7.74175 8.01984 8.16185 9.02260 9.73101 10.75495 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003824 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.012475 B = 7320.050481 C = 7930.872938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.146 4.146 4 C 0.090 3.910 5 H 0.098 0.902 6 F -0.188 7.188 7 C 0.485 3.515 8 O -0.488 6.488 9 N -0.661 5.661 10 C 0.170 3.830 11 C -0.234 4.234 12 C -0.059 4.059 13 C -0.243 4.243 14 C 0.166 3.834 15 O -0.172 6.172 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.186 4.186 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.407 0.593 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.270 0.730 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 17.336 6.322 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.203 4.203 4 C 0.050 3.950 5 H 0.116 0.884 6 F -0.169 7.169 7 C 0.269 3.731 8 O -0.360 6.360 9 N -0.307 5.307 10 C 0.077 3.923 11 C -0.255 4.255 12 C -0.077 4.077 13 C -0.263 4.263 14 C 0.112 3.888 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.207 4.207 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.242 0.758 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.217 16.807 5.260 18.367 hybrid contribution -0.317 -0.680 0.557 0.934 sum -5.534 16.127 5.817 18.015 Atomic orbital electron populations 1.21821 0.93458 1.02839 1.02603 1.21625 0.97309 0.97093 0.97438 1.21809 1.01924 0.94312 1.02294 1.21666 0.77750 0.93506 1.02038 0.88369 1.92886 1.29481 1.96753 1.97739 1.21032 0.78879 0.89392 0.83837 1.90826 1.50229 1.64189 1.30770 1.43412 1.59724 1.12669 1.14869 1.17180 0.93702 0.81976 0.99455 1.20258 0.98280 0.97268 1.09662 1.20505 0.98012 0.92358 0.96863 1.21192 0.98803 1.01109 1.05204 1.19129 0.90511 0.89843 0.89365 1.83995 1.50465 1.17124 1.55933 1.21354 1.10743 0.80019 1.34806 0.88950 1.25313 0.95374 0.99885 0.95966 1.70052 1.14868 1.34162 1.30293 0.85702 0.78310 0.80305 0.79027 1.19861 1.20248 1.19164 1.20171 1.03117 0.90672 1.06734 0.91365 0.91957 0.92207 0.88470 0.91782 0.91680 0.92396 0.75767 0.87303 0.86956 0.85387 0.91969 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.01 37.16 0.33 -1.02 16 2 C -0.12 -1.18 2.64 -90.61 -0.24 -1.42 16 3 C -0.15 -1.15 8.95 37.16 0.33 -0.82 16 4 C 0.09 1.01 3.35 -27.88 -0.09 0.92 16 5 H 0.10 0.71 7.98 -51.93 -0.41 0.30 16 6 F -0.19 -2.52 16.45 2.25 0.04 -2.48 16 7 C 0.48 7.49 5.95 -10.98 -0.07 7.42 16 8 O -0.49 -10.02 13.97 5.55 0.08 -9.94 16 9 N -0.66 -9.43 5.34 -9.88 -0.05 -9.48 16 10 C 0.17 3.15 6.29 -83.72 -0.53 2.62 16 11 C -0.23 -3.91 9.96 -39.34 -0.39 -4.30 16 12 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 13 C -0.24 -5.34 9.16 -39.36 -0.36 -5.70 16 14 C 0.17 4.21 6.64 -39.13 -0.26 3.95 16 15 O -0.17 -5.13 9.76 0.06 0.00 -5.13 16 16 C -0.39 -11.23 9.49 30.88 0.29 -10.94 16 17 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 20 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.19 -4.32 8.63 -39.20 -0.34 -4.66 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.70 7.39 -51.93 -0.38 0.32 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 1.21 7.78 -51.93 -0.40 0.81 16 29 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.41 3.95 8.70 -40.82 -0.36 3.60 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.13 3.34 6.25 -52.49 -0.33 3.01 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -34.29 319.44 -5.73 -40.02 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.53 Total: 5.94 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.81 Total: -14.39 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.71 Total: -34.59 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.29 -5.73 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784062513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.836 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds