Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47105 * 2 1 4 4 C 1.53004 * 109.47333 * 119.99530 * 2 1 3 5 5 H 1.08994 * 109.47288 * 305.18870 * 4 2 1 6 6 F 1.39902 * 109.47132 * 185.18996 * 4 2 1 7 7 C 1.50701 * 109.46803 * 65.19153 * 4 2 1 8 8 O 1.21290 * 120.00173 * 48.61079 * 7 4 2 9 9 N 1.34777 * 119.99985 * 228.60747 * 7 4 2 10 10 C 1.39921 * 120.00108 * 175.92910 * 9 7 4 11 11 C 1.38964 * 120.03787 * 215.25252 * 10 9 7 12 12 C 1.38154 * 120.06416 * 179.97438 * 11 10 9 13 13 C 1.38165 * 120.14165 * 359.74129 * 12 11 10 14 14 C 1.38904 * 120.07353 * 0.50861 * 13 12 11 15 15 O 1.35750 * 120.03651 * 179.76832 * 14 13 12 16 16 C 1.34824 * 117.00196 * 354.01866 * 15 14 13 17 17 H 1.08005 * 120.00046 * 5.05125 * 16 15 14 18 18 C 1.38645 * 120.00221 * 185.04297 * 16 15 14 19 19 N 1.31553 * 120.00409 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00142 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46966 * 90.00380 * 20 18 16 22 22 H 1.48498 * 109.47126 * 210.00642 * 20 18 16 23 23 H 1.48507 * 109.47042 * 330.00351 * 20 18 16 24 24 C 1.38712 * 120.03141 * 35.23049 * 10 9 7 25 25 H 1.08997 * 109.47194 * 60.00336 * 1 2 3 26 26 H 1.09007 * 109.46623 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47061 * 299.99665 * 1 2 3 28 28 H 1.08992 * 109.47461 * 240.00031 * 2 1 3 29 29 H 1.08992 * 109.47540 * 185.00611 * 3 2 1 30 30 H 1.09000 * 109.46798 * 305.00632 * 3 2 1 31 31 H 1.09000 * 109.47040 * 65.00150 * 3 2 1 32 32 H 0.97000 * 119.99721 * 355.93201 * 9 7 4 33 33 H 1.07993 * 119.96496 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.92759 * 180.02562 * 12 11 10 35 35 H 1.08006 * 119.96726 * 180.25735 * 13 12 11 36 36 H 0.97000 * 120.00747 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.07385 * 0.04115 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6029 -0.2638 2.1368 6 9 3.4340 -0.6187 1.3105 7 6 1.6454 -2.1742 1.1868 8 8 1.8512 -2.8157 0.1782 9 7 1.0639 -2.7610 2.2517 10 6 0.6202 -4.0852 2.1652 11 6 -0.5310 -4.4783 2.8369 12 6 -0.9699 -5.7855 2.7514 13 6 -0.2693 -6.7045 1.9941 14 6 0.8851 -6.3191 1.3245 15 8 1.5755 -7.2238 0.5845 16 6 1.1595 -8.5051 0.6399 17 1 0.2642 -8.7590 1.1880 18 6 1.8810 -9.4968 -0.0068 19 7 2.9717 -9.1877 -0.6742 20 14 1.3043 -11.2720 0.0694 21 1 0.3877 -11.5439 -1.0669 22 1 2.4781 -12.1778 -0.0137 23 1 0.5886 -11.5054 1.3495 24 6 1.3288 -5.0068 1.4085 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1262 1.4440 -0.0897 30 1 1.6053 1.9816 -0.8418 31 1 1.7517 1.9299 0.9314 32 1 0.9530 -2.2653 3.0780 33 1 -1.0831 -3.7613 3.4262 34 1 -1.8652 -6.0886 3.2740 35 1 -0.6173 -7.7247 1.9259 36 1 3.4767 -9.8816 -1.1264 37 1 2.2240 -4.7039 0.8858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784062513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = -116.251216 kcal Electronic energy + Delta-G solvation = -21606.683309 eV Core-core repulsion = 18070.107579 eV Total energy + Delta-G solvation = -3536.575729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.02804 -41.64166 -40.38132 -38.33133 -36.52556 -35.69234 -34.28620 -31.41608 -30.49966 -28.51180 -27.94476 -27.31080 -24.20146 -23.19971 -22.16769 -21.24145 -20.02757 -19.37192 -18.74351 -17.71589 -17.33448 -16.78530 -16.55739 -16.26380 -16.21296 -15.89903 -15.52052 -15.49451 -14.93835 -14.50337 -14.32366 -13.99891 -13.68274 -13.60692 -13.44042 -13.22939 -13.02643 -12.94730 -12.69091 -12.38713 -12.13746 -12.13009 -12.06751 -11.65609 -11.47755 -11.31777 -10.80338 -10.76805 -9.41462 -8.92920 -8.48218 -6.18500 0.32156 0.67156 1.31028 1.33589 1.45230 1.52867 1.74380 2.17267 2.80434 3.09683 3.19606 3.32247 3.57516 3.61902 3.77153 4.11192 4.14016 4.33590 4.38707 4.42156 4.50176 4.64413 4.71286 4.76820 4.86729 4.94049 4.99764 5.08869 5.14391 5.27679 5.35510 5.36499 5.38889 5.60736 5.71158 6.00747 6.15419 6.28121 6.94967 6.97101 7.77586 8.75722 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003824 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.012475 B = 7320.050481 C = 7930.872938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.140 4.140 4 C 0.095 3.905 5 H 0.157 0.843 6 F -0.201 7.201 7 C 0.479 3.521 8 O -0.549 6.549 9 N -0.643 5.643 10 C 0.177 3.823 11 C -0.197 4.197 12 C -0.048 4.048 13 C -0.252 4.252 14 C 0.125 3.875 15 O -0.237 6.237 16 C -0.415 4.415 17 H 0.108 0.892 18 C -0.028 4.028 19 N -0.925 5.925 20 Si 1.025 2.975 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.247 1.247 24 C -0.216 4.216 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.435 0.565 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.124 0.876 36 H 0.272 0.728 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.175 19.651 9.655 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 C -0.197 4.197 4 C 0.056 3.944 5 H 0.174 0.826 6 F -0.182 7.182 7 C 0.266 3.734 8 O -0.425 6.425 9 N -0.291 5.291 10 C 0.083 3.917 11 C -0.217 4.217 12 C -0.067 4.067 13 C -0.272 4.272 14 C 0.074 3.926 15 O -0.144 6.144 16 C -0.491 4.491 17 H 0.125 0.875 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.843 3.157 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.170 1.170 24 C -0.238 4.238 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.276 0.724 33 H 0.188 0.812 34 H 0.181 0.819 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.620 19.210 8.672 22.772 hybrid contribution 0.605 -1.053 -0.329 1.258 sum -8.015 18.158 8.343 21.530 Atomic orbital electron populations 1.21808 0.92122 1.01573 1.04733 1.21650 0.98402 0.98149 0.95469 1.21787 1.01186 0.92567 1.04206 1.21957 0.77097 0.90262 1.05036 0.82619 1.92866 1.30892 1.96515 1.97914 1.22007 0.77407 0.91098 0.82930 1.90826 1.52353 1.66060 1.33250 1.43325 1.58820 1.10987 1.15968 1.17344 0.93643 0.82976 0.97705 1.20931 0.96140 0.97785 1.06883 1.21081 0.98615 0.91913 0.95041 1.21356 0.98069 1.02114 1.05655 1.19683 0.92095 0.90046 0.90796 1.83962 1.53016 1.18192 1.59190 1.21940 1.11536 0.80336 1.35319 0.87455 1.26748 0.95294 1.05250 0.95172 1.70228 1.17252 1.35991 1.32873 0.84511 0.78060 0.73080 0.80016 1.18757 1.19694 1.17033 1.20191 1.03392 0.91435 1.08745 0.90560 0.94760 0.88845 0.92232 0.92918 0.90586 0.89772 0.72437 0.81250 0.81929 0.85792 0.91869 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.01 71.98 0.65 -1.60 16 2 C -0.12 -2.24 2.64 -10.79 -0.03 -2.27 16 3 C -0.14 -1.84 8.95 71.98 0.64 -1.20 16 4 C 0.10 1.93 3.35 29.85 0.10 2.03 16 5 H 0.16 1.40 7.98 -2.39 -0.02 1.38 16 6 F -0.20 -5.18 16.45 44.97 0.74 -4.44 16 7 C 0.48 14.60 5.95 87.66 0.52 15.12 16 8 O -0.55 -24.04 13.97 -3.06 -0.04 -24.08 16 9 N -0.64 -16.65 5.34 -303.55 -1.62 -18.27 16 10 C 0.18 6.28 6.29 38.14 0.24 6.52 16 11 C -0.20 -5.57 9.96 22.42 0.22 -5.35 16 12 C -0.05 -1.53 10.03 22.23 0.22 -1.30 16 13 C -0.25 -11.04 9.16 22.41 0.21 -10.84 16 14 C 0.12 6.70 6.64 22.56 0.15 6.85 16 15 O -0.24 -15.39 9.76 -22.69 -0.22 -15.62 16 16 C -0.42 -25.26 9.49 67.92 0.64 -24.62 16 17 H 0.11 5.85 5.20 -2.91 -0.02 5.83 16 18 C -0.03 -1.65 5.49 84.83 0.47 -1.18 16 19 N -0.93 -59.89 13.67 21.61 0.30 -59.60 16 20 Si 1.03 44.12 29.55 68.60 2.03 46.14 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 24 C -0.22 -10.61 8.63 22.51 0.19 -10.41 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.03 0.72 7.39 -2.38 -0.02 0.70 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 1.57 7.78 -2.39 -0.02 1.56 16 29 H 0.05 0.82 7.84 -2.39 -0.02 0.80 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.43 6.21 8.70 -92.71 -0.81 5.40 16 33 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 34 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 36 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 37 H 0.10 5.32 6.25 -2.91 -0.02 5.30 16 Total: -1.00 -87.81 319.44 5.71 -82.10 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.29 Total: 22.00 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 4.23 Total: -28.23 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.32 Total: -77.87 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.26 Total: -39.70 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.74 Total: -4.44 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -87.81 5.71 -82.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784062513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.149 kcal (2) G-P(sol) polarization free energy of solvation -87.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds