Wall clock time and date at job start Tue Mar 31 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47157 * 299.99603 * 3 2 1 6 6 H 1.48495 * 109.47722 * 59.99773 * 3 2 1 7 7 C 1.37879 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47400 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47400 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47295 * 179.97438 * 12 11 10 14 14 O 1.20828 * 119.99828 * 0.02562 * 13 12 11 15 15 O 1.34231 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.45204 * 116.99877 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46639 * 180.02562 * 16 15 13 18 18 C 1.38232 * 119.59260 * 359.97438 * 17 16 15 19 19 C 1.38596 * 119.18886 * 180.02562 * 18 17 16 20 20 C 1.38879 * 118.39652 * 0.25621 * 19 18 17 21 21 F 1.35106 * 120.44068 * 179.74732 * 20 19 18 22 22 C 1.38422 * 119.11596 * 359.51901 * 20 19 18 23 23 N 1.31848 * 119.58665 * 180.02562 * 17 16 15 24 24 H 0.97001 * 119.99922 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47504 * 59.99598 * 9 7 2 26 26 H 1.09001 * 109.47092 * 299.99282 * 9 7 2 27 27 H 1.09002 * 109.46955 * 59.99528 * 10 9 7 28 28 H 1.09002 * 109.47137 * 299.99520 * 10 9 7 29 29 H 1.09002 * 109.46811 * 59.99664 * 11 10 9 30 30 H 1.09002 * 109.46771 * 299.99974 * 11 10 9 31 31 H 1.09002 * 109.46955 * 59.99758 * 12 11 10 32 32 H 1.09001 * 109.46682 * 300.00029 * 12 11 10 33 33 H 1.08997 * 109.47152 * 60.00033 * 16 15 13 34 34 H 1.08998 * 109.46673 * 299.99425 * 16 15 13 35 35 H 1.08002 * 120.40687 * 0.02599 * 18 17 16 36 36 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.63454 * 180.20814 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0018 13 6 1.7209 -7.4551 0.0031 14 8 0.5127 -7.4551 0.0030 15 8 2.3921 -8.6176 0.0033 16 6 1.6012 -9.8354 0.0040 17 6 2.5193 -11.0304 0.0048 18 6 3.8883 -10.8395 0.0042 19 6 4.7249 -11.9445 0.0044 20 6 4.1495 -13.2085 -0.0003 21 9 4.9261 -14.3141 -0.0054 22 6 2.7698 -13.3205 0.0051 23 7 2.0066 -12.2452 0.0050 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8539 -5.0446 0.8914 31 1 3.1011 -6.0918 0.8918 32 1 3.1011 -6.0927 -0.8882 33 1 0.9721 -9.8605 -0.8858 34 1 0.9728 -9.8599 0.8942 35 1 4.3011 -9.8415 0.0037 36 1 5.7983 -11.8254 0.0036 37 1 2.3135 -14.2994 0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:26 Heat of formation + Delta-G solvation = -119.050384 kcal Electronic energy + Delta-G solvation = -20044.970494 eV Core-core repulsion = 16508.273384 eV Total energy + Delta-G solvation = -3536.697110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.46249 -40.95687 -40.24844 -36.90429 -35.03018 -33.07112 -32.77377 -32.37529 -30.00672 -27.57723 -25.73884 -24.49102 -23.09943 -22.36018 -20.64234 -20.07360 -18.19242 -18.00101 -17.20710 -17.13551 -16.96389 -16.27731 -16.19099 -15.69030 -15.13442 -14.55609 -14.41115 -14.37000 -14.20453 -13.61272 -13.19634 -12.97919 -12.72651 -12.36812 -12.32089 -11.78250 -11.69116 -11.10237 -11.04450 -10.63846 -10.60872 -10.50380 -10.46411 -10.44666 -10.14936 -9.68483 -9.32137 -9.32002 -9.03386 -8.33979 -5.98499 -4.01088 0.33266 0.56176 2.17834 2.26900 3.02948 3.31413 3.38867 3.42547 3.48609 3.80224 4.10292 4.22124 4.36147 4.46657 4.71856 4.77855 4.93173 5.10356 5.16948 5.21069 5.24427 5.37186 5.38718 5.40843 5.66831 6.00953 6.04295 6.13551 6.26638 6.42660 6.72698 6.90845 7.13046 7.23244 7.68003 7.70309 7.84388 8.02199 8.43832 9.06723 9.62910 11.12820 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.053006 B = 0.002098 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.118220 B =13342.669283 C =13834.429650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.110 4.110 13 C 0.464 3.536 14 O -0.499 6.499 15 O -0.363 6.363 16 C 0.119 3.881 17 C 0.115 3.885 18 C -0.119 4.119 19 C -0.107 4.107 20 C 0.045 3.955 21 F -0.129 7.129 22 C 0.081 3.919 23 N -0.452 5.452 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.316 -26.712 0.010 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.147 4.147 12 C -0.148 4.148 13 C 0.307 3.693 14 O -0.385 6.385 15 O -0.280 6.280 16 C 0.045 3.955 17 C -0.022 4.022 18 C -0.139 4.139 19 C -0.133 4.133 20 C 0.023 3.977 21 F -0.108 7.108 22 C -0.078 4.078 23 N -0.162 5.162 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.176 0.824 36 H 0.169 0.831 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.903 -26.744 0.009 27.887 hybrid contribution 1.374 0.651 -0.002 1.521 sum 9.278 -26.093 0.007 27.693 Atomic orbital electron populations 1.69979 1.06055 1.26456 1.50922 1.25047 0.94856 0.99296 0.95431 0.86546 0.80076 0.83863 0.77555 1.19761 1.21057 1.21050 1.21303 0.93044 0.91118 1.50404 0.92635 1.19105 0.94044 0.91250 0.97397 1.21650 0.99153 0.93513 1.00431 1.21598 0.97103 0.92655 1.03356 1.21634 0.99978 0.87501 1.05640 1.24252 0.87683 0.85372 0.72018 1.90704 1.15610 1.87604 1.44552 1.86407 1.41879 1.14784 1.84929 1.21295 0.90869 0.78560 1.04813 1.20818 0.92338 0.92075 0.96978 1.21970 0.93276 1.00647 0.98016 1.21765 1.02174 0.90724 0.98649 1.18856 0.90369 0.83620 1.04807 1.91540 1.74527 1.50915 1.93818 1.22838 0.88431 0.98443 0.98058 1.67252 1.39735 0.97781 1.11389 0.93067 0.96527 0.96517 0.93178 0.93172 0.91451 0.91457 0.87710 0.87704 0.88513 0.88520 0.82371 0.83078 0.81129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 10 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 11 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.11 -1.31 5.81 -27.89 -0.16 -1.47 16 13 C 0.46 5.92 7.96 36.00 0.29 6.20 16 14 O -0.50 -8.03 15.73 -18.75 -0.29 -8.33 16 15 O -0.36 -3.80 8.66 -39.26 -0.34 -4.14 16 16 C 0.12 1.17 6.00 36.00 0.22 1.38 16 17 C 0.12 1.06 6.78 -82.59 -0.56 0.50 16 18 C -0.12 -0.91 9.41 -39.45 -0.37 -1.28 16 19 C -0.11 -0.72 10.16 -39.21 -0.40 -1.12 16 20 C 0.04 0.34 7.35 -39.28 -0.29 0.05 16 21 F -0.13 -1.01 17.28 2.25 0.04 -0.97 16 22 C 0.08 0.62 11.17 -17.47 -0.20 0.43 16 23 N -0.45 -4.33 10.27 -9.42 -0.10 -4.42 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 35 H 0.16 1.03 6.98 -52.49 -0.37 0.67 16 36 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -32.53 330.40 -7.25 -39.78 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.98 Total: -4.49 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.28 Total: -12.63 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.64 Total: -30.78 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.63 Total: -12.46 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.53 -7.25 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.266 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds