Wall clock time and date at job start Tue Mar 31 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47157 * 299.99603 * 3 2 1 6 6 H 1.48495 * 109.47722 * 59.99773 * 3 2 1 7 7 C 1.37879 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47400 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47400 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47295 * 179.97438 * 12 11 10 14 14 O 1.20828 * 119.99828 * 0.02562 * 13 12 11 15 15 O 1.34231 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.45204 * 116.99877 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46639 * 180.02562 * 16 15 13 18 18 C 1.38232 * 119.59260 * 359.97438 * 17 16 15 19 19 C 1.38596 * 119.18886 * 180.02562 * 18 17 16 20 20 C 1.38879 * 118.39652 * 0.25621 * 19 18 17 21 21 F 1.35106 * 120.44068 * 179.74732 * 20 19 18 22 22 C 1.38422 * 119.11596 * 359.51901 * 20 19 18 23 23 N 1.31848 * 119.58665 * 180.02562 * 17 16 15 24 24 H 0.97001 * 119.99922 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47504 * 59.99598 * 9 7 2 26 26 H 1.09001 * 109.47092 * 299.99282 * 9 7 2 27 27 H 1.09002 * 109.46955 * 59.99528 * 10 9 7 28 28 H 1.09002 * 109.47137 * 299.99520 * 10 9 7 29 29 H 1.09002 * 109.46811 * 59.99664 * 11 10 9 30 30 H 1.09002 * 109.46771 * 299.99974 * 11 10 9 31 31 H 1.09002 * 109.46955 * 59.99758 * 12 11 10 32 32 H 1.09001 * 109.46682 * 300.00029 * 12 11 10 33 33 H 1.08997 * 109.47152 * 60.00033 * 16 15 13 34 34 H 1.08998 * 109.46673 * 299.99425 * 16 15 13 35 35 H 1.08002 * 120.40687 * 0.02599 * 18 17 16 36 36 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.63454 * 180.20814 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0018 13 6 1.7209 -7.4551 0.0031 14 8 0.5127 -7.4551 0.0030 15 8 2.3921 -8.6176 0.0033 16 6 1.6012 -9.8354 0.0040 17 6 2.5193 -11.0304 0.0048 18 6 3.8883 -10.8395 0.0042 19 6 4.7249 -11.9445 0.0044 20 6 4.1495 -13.2085 -0.0003 21 9 4.9261 -14.3141 -0.0054 22 6 2.7698 -13.3205 0.0051 23 7 2.0066 -12.2452 0.0050 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8539 -5.0446 0.8914 31 1 3.1011 -6.0918 0.8918 32 1 3.1011 -6.0927 -0.8882 33 1 0.9721 -9.8605 -0.8858 34 1 0.9728 -9.8599 0.8942 35 1 4.3011 -9.8415 0.0037 36 1 5.7983 -11.8254 0.0036 37 1 2.3135 -14.2994 0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805695185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:26 Heat of formation + Delta-G solvation = -137.311927 kcal Electronic energy + Delta-G solvation = -20045.762374 eV Core-core repulsion = 16508.273384 eV Total energy + Delta-G solvation = -3537.488990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.04530 -41.78775 -41.03150 -37.90998 -36.60815 -34.64983 -33.64610 -33.13418 -31.60367 -28.54331 -27.29220 -25.10471 -24.51337 -23.24402 -22.00547 -21.42719 -18.88011 -18.75059 -18.39276 -18.01266 -17.89809 -17.84159 -16.89248 -16.59571 -16.35143 -16.27610 -15.24581 -15.17692 -14.95876 -14.55662 -14.28794 -14.20519 -13.83287 -13.62572 -13.51096 -13.32684 -13.01500 -12.84841 -12.31668 -12.16425 -12.16047 -11.99695 -11.64535 -11.35219 -11.27137 -11.03335 -11.03005 -10.75468 -10.53797 -9.93535 -8.17442 -6.28795 -0.27043 0.01012 1.17581 1.38004 1.42380 1.42463 1.55968 2.42788 2.43177 2.88841 3.12957 3.15809 3.52798 3.71504 3.74345 3.86988 4.01162 4.10163 4.11882 4.16842 4.43294 4.59217 4.67558 4.68578 4.81075 4.83526 4.86317 4.90219 5.18411 5.26976 5.35720 5.43087 5.49581 5.59664 5.81028 5.90997 6.27483 6.62161 6.70287 6.90454 7.40814 8.94816 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.053006 B = 0.002098 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.118220 B =13342.669283 C =13834.429650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.103 4.103 12 C -0.100 4.100 13 C 0.470 3.530 14 O -0.540 6.540 15 O -0.347 6.347 16 C 0.120 3.880 17 C 0.101 3.899 18 C -0.120 4.120 19 C -0.100 4.100 20 C 0.041 3.959 21 F -0.131 7.131 22 C 0.077 3.923 23 N -0.476 5.476 24 H 0.262 0.738 25 H -0.014 1.014 26 H -0.014 1.014 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.201 -27.185 0.011 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.021 4.021 10 C -0.134 4.134 11 C -0.141 4.141 12 C -0.137 4.137 13 C 0.315 3.685 14 O -0.429 6.429 15 O -0.264 6.264 16 C 0.046 3.954 17 C -0.036 4.036 18 C -0.140 4.140 19 C -0.126 4.126 20 C 0.019 3.981 21 F -0.110 7.110 22 C -0.082 4.082 23 N -0.186 5.186 24 H 0.071 0.929 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.189 0.811 36 H 0.195 0.805 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 10.821 -27.240 0.010 29.310 hybrid contribution 0.459 0.712 -0.002 0.847 sum 11.280 -26.528 0.008 28.827 Atomic orbital electron populations 1.70129 1.08000 1.27614 1.52070 1.26075 0.95781 1.03691 0.94962 0.85357 0.79266 0.78590 0.77568 1.18056 1.20639 1.20627 1.21796 0.93800 0.92221 1.49863 0.91503 1.19077 0.94756 0.93725 0.94499 1.21438 0.97849 0.92320 1.01748 1.21376 0.97549 0.93313 1.01819 1.21515 0.98759 0.84962 1.08441 1.24362 0.87065 0.86177 0.70871 1.90706 1.17407 1.88156 1.46617 1.86379 1.41243 1.14444 1.84300 1.21295 0.91092 0.78562 1.04472 1.20767 0.92958 0.91703 0.98206 1.22099 0.92560 1.01594 0.97724 1.22052 1.03437 0.89968 0.97148 1.18952 0.90362 0.83939 1.04811 1.91540 1.74502 1.51072 1.93837 1.23170 0.88774 0.98779 0.97430 1.67217 1.40665 0.98311 1.12404 0.92924 0.99537 0.99528 0.91735 0.91729 0.93139 0.93145 0.84829 0.84820 0.88984 0.88989 0.81095 0.80489 0.79175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 2 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.02 0.87 4.97 29.85 0.15 1.02 16 10 C -0.10 -3.63 5.15 30.60 0.16 -3.47 16 11 C -0.10 -3.31 4.50 30.60 0.14 -3.17 16 12 C -0.10 -2.12 5.81 29.85 0.17 -1.94 16 13 C 0.47 11.39 7.96 71.23 0.57 11.96 16 14 O -0.54 -17.51 15.73 21.96 0.35 -17.16 16 15 O -0.35 -6.68 8.66 -51.43 -0.45 -7.13 16 16 C 0.12 2.30 6.00 71.24 0.43 2.73 16 17 C 0.10 1.75 6.78 42.55 0.29 2.04 16 18 C -0.12 -1.59 9.41 22.35 0.21 -1.37 16 19 C -0.10 -1.10 10.16 22.51 0.23 -0.87 16 20 C 0.04 0.54 7.35 22.47 0.17 0.70 16 21 F -0.13 -1.80 17.28 44.97 0.78 -1.03 16 22 C 0.08 1.09 11.17 84.73 0.95 2.04 16 23 N -0.48 -8.79 10.27 -183.71 -1.89 -10.68 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 31 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 34 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 35 H 0.17 1.74 6.98 -2.91 -0.02 1.72 16 36 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 37 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -71.83 330.40 6.31 -65.51 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: 1.07 Total: 2.63 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.15 Total: -20.52 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -1.60 Total: -68.46 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.10 Total: -24.29 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.78 Total: -1.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -71.83 6.31 -65.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.801 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds