Wall clock time and date at job start Tue Mar 31 2020 05:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48501 * 109.46866 * 270.00038 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99799 * 3 2 1 6 6 H 1.48493 * 109.47295 * 149.99805 * 3 2 1 7 7 C 1.37880 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47364 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47529 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47114 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00071 * 359.97438 * 13 12 11 15 15 O 1.34233 * 120.00152 * 179.97438 * 13 12 11 16 16 C 1.45194 * 116.99930 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47090 * 179.97438 * 16 15 13 18 18 C 1.38232 * 120.40634 * 269.72961 * 17 16 15 19 19 N 1.31851 * 120.82104 * 179.68102 * 18 17 16 20 20 C 1.31876 * 121.74423 * 0.62222 * 19 18 17 21 21 C 1.38420 * 120.72678 * 359.66458 * 20 19 18 22 22 F 1.35102 * 120.43988 * 179.97438 * 21 20 19 23 23 C 1.38586 * 120.40313 * 89.99780 * 17 16 15 24 24 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46714 * 60.00582 * 9 7 2 26 26 H 1.09003 * 109.47502 * 300.00500 * 9 7 2 27 27 H 1.09003 * 109.46845 * 60.00520 * 10 9 7 28 28 H 1.09003 * 109.47104 * 300.00602 * 10 9 7 29 29 H 1.08997 * 109.47190 * 59.99210 * 11 10 9 30 30 H 1.09008 * 109.46616 * 299.99801 * 11 10 9 31 31 H 1.09003 * 109.47220 * 59.99842 * 12 11 10 32 32 H 1.08995 * 109.47044 * 299.99528 * 12 11 10 33 33 H 1.09001 * 109.46972 * 59.99949 * 16 15 13 34 34 H 1.09000 * 109.47619 * 300.00155 * 16 15 13 35 35 H 1.07998 * 119.58929 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.63049 * 179.67883 * 20 19 18 37 37 H 1.08001 * 120.80233 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 6 1.7211 -7.4551 -0.0005 14 8 0.5129 -7.4551 -0.0005 15 8 2.3923 -8.6176 -0.0005 16 6 1.6015 -9.8353 0.0000 17 6 2.5195 -11.0305 -0.0007 18 6 2.9403 -11.5887 -1.1932 19 7 3.7484 -12.6305 -1.2034 20 6 4.1766 -13.1875 -0.0873 21 6 3.7932 -12.6873 1.1451 22 9 4.2348 -13.2627 2.2848 23 6 2.9477 -11.5867 1.1943 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.8539 -5.0446 -0.8913 30 1 0.8534 -5.0451 0.8887 31 1 3.1007 -6.0923 0.8899 32 1 3.1018 -6.0922 -0.8901 33 1 0.9723 -9.8603 -0.8897 34 1 0.9730 -9.8600 0.8902 35 1 2.6068 -11.1633 -2.1282 36 1 4.8338 -14.0432 -0.1355 37 1 2.6319 -11.1739 2.1410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:29 Heat of formation + Delta-G solvation = -120.612082 kcal Electronic energy + Delta-G solvation = -20070.119855 eV Core-core repulsion = 16533.355025 eV Total energy + Delta-G solvation = -3536.764831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.48083 -40.93802 -40.27256 -36.92888 -35.02668 -33.72369 -32.70343 -31.82213 -30.02206 -27.66590 -25.75774 -24.33772 -23.15495 -22.40395 -20.66831 -20.06966 -18.04967 -17.97052 -17.64626 -17.40666 -16.59950 -16.33006 -16.23866 -16.13425 -14.88161 -14.48538 -14.42732 -14.15309 -13.99561 -13.68029 -13.45880 -12.99979 -12.74744 -12.50976 -12.27487 -11.77216 -11.69836 -11.03758 -10.98872 -10.71997 -10.62745 -10.55088 -10.49214 -10.31563 -10.18199 -9.68070 -9.51989 -9.30761 -9.04319 -8.33500 -5.98292 -4.00923 0.22189 0.46405 2.17565 2.47506 3.15186 3.32549 3.38762 3.41374 3.41986 3.82284 4.01297 4.13349 4.27000 4.46746 4.49917 4.72790 4.74765 5.02131 5.17843 5.21391 5.21774 5.24825 5.37284 5.47039 5.66392 6.00184 6.01241 6.13536 6.25065 6.42829 6.72865 6.90870 7.13190 7.21205 7.68667 7.70144 7.84343 8.02233 8.43988 9.06598 9.63003 11.12996 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042618 B = 0.002138 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.840290 B =13090.314726 C =13241.177976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.111 4.111 13 C 0.461 3.539 14 O -0.502 6.502 15 O -0.357 6.357 16 C 0.109 3.891 17 C -0.116 4.116 18 C 0.115 3.885 19 N -0.457 5.457 20 C 0.082 3.918 21 C 0.047 3.953 22 F -0.127 7.127 23 C -0.085 4.085 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 -27.076 0.695 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.305 3.695 14 O -0.389 6.389 15 O -0.275 6.275 16 C 0.034 3.966 17 C -0.118 4.118 18 C -0.042 4.042 19 N -0.164 5.164 20 C -0.076 4.076 21 C 0.025 3.975 22 F -0.106 7.106 23 C -0.112 4.112 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.675 -27.364 -0.064 28.166 hybrid contribution 0.103 1.088 1.099 1.550 sum 6.777 -26.276 1.034 27.155 Atomic orbital electron populations 1.69969 1.06056 1.26568 1.50863 1.25045 0.94856 0.99282 0.95412 0.86597 0.79819 0.83519 0.78074 1.20684 1.21256 1.19904 1.21267 0.93014 0.91130 1.50513 0.92691 1.19098 0.94028 0.91237 0.97368 1.21652 0.99160 0.93517 1.00446 1.21589 0.97078 0.92678 1.03285 1.21637 0.99977 0.87623 1.05634 1.24288 0.87667 0.85656 0.71923 1.90689 1.15614 1.87691 1.44861 1.86604 1.41751 1.14488 1.84655 1.21644 0.91160 0.79354 1.04422 1.20484 1.00292 0.97414 0.93585 1.22894 0.92077 0.91304 0.97965 1.67844 1.09793 1.09409 1.29369 1.23049 0.98543 0.99820 0.86184 1.18775 0.99441 0.95593 0.83673 1.91553 1.87650 1.83319 1.48082 1.21659 0.95252 0.94103 1.00187 0.93015 0.96531 0.96548 0.93187 0.93168 0.91468 0.91516 0.87800 0.87732 0.89303 0.89668 0.81462 0.81235 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.11 -1.38 5.81 -27.89 -0.16 -1.55 16 13 C 0.46 5.98 7.96 36.01 0.29 6.27 16 14 O -0.50 -7.97 15.73 -18.75 -0.29 -8.27 16 15 O -0.36 -3.90 10.20 -39.27 -0.40 -4.30 16 16 C 0.11 0.92 5.61 36.01 0.20 1.12 16 17 C -0.12 -0.89 5.54 -104.49 -0.58 -1.47 16 18 C 0.11 0.88 10.86 -17.55 -0.19 0.69 16 19 N -0.46 -3.93 10.36 -13.20 -0.14 -4.07 16 20 C 0.08 0.60 11.17 -17.47 -0.20 0.40 16 21 C 0.05 0.35 7.34 -39.28 -0.29 0.07 16 22 F -0.13 -1.03 17.28 2.25 0.04 -0.99 16 23 C -0.09 -0.63 9.85 -39.22 -0.39 -1.02 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.07 1.16 8.10 -51.92 -0.42 0.74 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -32.91 332.51 -7.21 -40.13 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -5.03 Total: -4.85 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.12 Total: -12.90 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.60 Total: -30.48 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.70 Total: -12.57 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.91 -7.21 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.484 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds