Wall clock time and date at job start Tue Mar 31 2020 05:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48501 * 109.46866 * 270.00038 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99799 * 3 2 1 6 6 H 1.48493 * 109.47295 * 149.99805 * 3 2 1 7 7 C 1.37880 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47364 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47529 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47114 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00071 * 359.97438 * 13 12 11 15 15 O 1.34233 * 120.00152 * 179.97438 * 13 12 11 16 16 C 1.45194 * 116.99930 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47090 * 179.97438 * 16 15 13 18 18 C 1.38232 * 120.40634 * 269.72961 * 17 16 15 19 19 N 1.31851 * 120.82104 * 179.68102 * 18 17 16 20 20 C 1.31876 * 121.74423 * 0.62222 * 19 18 17 21 21 C 1.38420 * 120.72678 * 359.66458 * 20 19 18 22 22 F 1.35102 * 120.43988 * 179.97438 * 21 20 19 23 23 C 1.38586 * 120.40313 * 89.99780 * 17 16 15 24 24 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46714 * 60.00582 * 9 7 2 26 26 H 1.09003 * 109.47502 * 300.00500 * 9 7 2 27 27 H 1.09003 * 109.46845 * 60.00520 * 10 9 7 28 28 H 1.09003 * 109.47104 * 300.00602 * 10 9 7 29 29 H 1.08997 * 109.47190 * 59.99210 * 11 10 9 30 30 H 1.09008 * 109.46616 * 299.99801 * 11 10 9 31 31 H 1.09003 * 109.47220 * 59.99842 * 12 11 10 32 32 H 1.08995 * 109.47044 * 299.99528 * 12 11 10 33 33 H 1.09001 * 109.46972 * 59.99949 * 16 15 13 34 34 H 1.09000 * 109.47619 * 300.00155 * 16 15 13 35 35 H 1.07998 * 119.58929 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.63049 * 179.67883 * 20 19 18 37 37 H 1.08001 * 120.80233 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 6 1.7211 -7.4551 -0.0005 14 8 0.5129 -7.4551 -0.0005 15 8 2.3923 -8.6176 -0.0005 16 6 1.6015 -9.8353 0.0000 17 6 2.5195 -11.0305 -0.0007 18 6 2.9403 -11.5887 -1.1932 19 7 3.7484 -12.6305 -1.2034 20 6 4.1766 -13.1875 -0.0873 21 6 3.7932 -12.6873 1.1451 22 9 4.2348 -13.2627 2.2848 23 6 2.9477 -11.5867 1.1943 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.8539 -5.0446 -0.8913 30 1 0.8534 -5.0451 0.8887 31 1 3.1007 -6.0923 0.8899 32 1 3.1018 -6.0922 -0.8901 33 1 0.9723 -9.8603 -0.8897 34 1 0.9730 -9.8600 0.8902 35 1 2.6068 -11.1633 -2.1282 36 1 4.8338 -14.0432 -0.1355 37 1 2.6319 -11.1739 2.1410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805695993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:28 Heat of formation + Delta-G solvation = -139.031755 kcal Electronic energy + Delta-G solvation = -20070.918592 eV Core-core repulsion = 16533.355025 eV Total energy + Delta-G solvation = -3537.563568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.07062 -41.73828 -41.03422 -37.90717 -36.61411 -34.67222 -34.32495 -32.42394 -31.63288 -28.57630 -27.31580 -24.93193 -24.56434 -23.27176 -22.03973 -21.44781 -18.73114 -18.61950 -18.56749 -18.36678 -17.95374 -17.54280 -17.13483 -16.87203 -16.46508 -16.12570 -15.07059 -14.93951 -14.68444 -14.53221 -14.52020 -14.24809 -13.86093 -13.69760 -13.53496 -13.33365 -13.07871 -12.82567 -12.35557 -12.17879 -12.16849 -11.82548 -11.69092 -11.36616 -11.30171 -11.11487 -10.94490 -10.76688 -10.53568 -10.08449 -8.17928 -6.29378 -0.35581 -0.10800 1.17829 1.41625 1.43275 1.54292 1.65211 2.42715 2.53939 2.84014 3.15135 3.25163 3.44982 3.59801 3.70880 3.82144 3.93534 4.02885 4.11200 4.14804 4.33972 4.58768 4.63385 4.65961 4.71670 4.81354 4.87782 4.90652 5.16848 5.24267 5.33962 5.41279 5.45964 5.58244 5.79715 5.89845 6.26835 6.64927 6.71923 6.89310 7.40127 8.94095 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042618 B = 0.002138 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.840290 B =13090.314726 C =13241.177976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.097 4.097 11 C -0.101 4.101 12 C -0.104 4.104 13 C 0.469 3.531 14 O -0.538 6.538 15 O -0.353 6.353 16 C 0.106 3.894 17 C -0.120 4.120 18 C 0.113 3.887 19 N -0.478 5.478 20 C 0.084 3.916 21 C 0.038 3.962 22 F -0.132 7.132 23 C -0.086 4.086 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.184 0.816 36 H 0.192 0.808 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.972 -27.588 0.651 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.141 4.141 13 C 0.314 3.686 14 O -0.428 6.428 15 O -0.270 6.270 16 C 0.033 3.967 17 C -0.122 4.122 18 C -0.044 4.044 19 N -0.185 5.185 20 C -0.074 4.074 21 C 0.017 3.983 22 F -0.110 7.110 23 C -0.112 4.112 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.005 0.995 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.201 0.799 36 H 0.209 0.791 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.757 -27.903 -0.108 29.245 hybrid contribution -0.558 1.164 1.116 1.706 sum 8.199 -26.739 1.008 27.986 Atomic orbital electron populations 1.70118 1.07965 1.27706 1.51944 1.26063 0.95783 1.03640 0.94899 0.85412 0.78682 0.78251 0.78481 1.19772 1.21035 1.18420 1.21759 0.93749 0.92278 1.50093 0.91644 1.19061 0.94700 0.93608 0.94548 1.21443 0.97896 0.92501 1.01603 1.21357 0.97444 0.93127 1.01909 1.21503 0.98882 0.85663 1.08022 1.24243 0.87023 0.86358 0.70965 1.90688 1.17126 1.88226 1.46724 1.86572 1.41763 1.14640 1.84055 1.21815 0.91287 0.78485 1.05151 1.20390 1.00727 0.97304 0.93801 1.23195 0.91528 0.90985 0.98682 1.67904 1.10589 1.10060 1.29948 1.23414 0.98159 1.00025 0.85778 1.18837 0.99892 0.95909 0.83709 1.91543 1.87759 1.83423 1.48292 1.21857 0.94755 0.93899 1.00719 0.92883 0.99431 0.99474 0.91945 0.91870 0.92935 0.93043 0.85406 0.85265 0.88487 0.89221 0.79904 0.79114 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 2 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 3 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.73 5.15 30.59 0.16 -3.57 16 11 C -0.10 -3.28 4.50 30.59 0.14 -3.14 16 12 C -0.10 -2.33 5.81 29.85 0.17 -2.16 16 13 C 0.47 11.43 7.96 71.24 0.57 12.00 16 14 O -0.54 -16.86 15.73 21.97 0.35 -16.51 16 15 O -0.35 -7.00 10.20 -51.45 -0.52 -7.53 16 16 C 0.11 1.65 5.61 71.24 0.40 2.05 16 17 C -0.12 -1.66 5.54 -19.78 -0.11 -1.77 16 18 C 0.11 1.56 10.86 84.69 0.92 2.48 16 19 N -0.48 -7.51 10.36 -195.66 -2.03 -9.53 16 20 C 0.08 1.10 11.17 84.73 0.95 2.04 16 21 C 0.04 0.52 7.34 22.47 0.17 0.69 16 22 F -0.13 -1.96 17.28 44.97 0.78 -1.19 16 23 C -0.09 -1.14 9.85 22.51 0.22 -0.92 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.05 1.81 8.10 -2.38 -0.02 1.80 16 31 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 34 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -71.54 332.51 6.37 -65.17 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 1.06 Total: 2.64 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.42 Total: -21.62 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -1.74 Total: -67.27 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.18 Total: -24.04 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.19 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.54 6.37 -65.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.857 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds