Wall clock time and date at job start Tue Mar 31 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48500 * 109.46838 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.47005 * 30.00082 * 3 2 1 6 6 H 1.48497 * 109.46890 * 150.00288 * 3 2 1 7 7 C 1.38629 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00274 * 0.02562 * 7 2 1 9 9 O 1.34804 * 119.99889 * 179.97438 * 7 2 1 10 10 C 1.35800 * 116.99866 * 185.06845 * 9 7 2 11 11 C 1.38713 * 120.08838 * 354.39698 * 10 9 7 12 12 C 1.38357 * 119.98111 * 179.97438 * 11 10 9 13 13 F 1.35104 * 119.91986 * 180.02562 * 12 11 10 14 14 C 1.38527 * 120.15791 * 0.02562 * 12 11 10 15 15 C 1.38214 * 120.17759 * 0.27563 * 14 12 11 16 16 C 1.38721 * 120.01279 * 359.45097 * 15 14 12 17 17 N 1.39922 * 120.07509 * 180.25281 * 16 15 14 18 18 C 1.46503 * 120.00349 * 0.29398 * 17 16 15 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 17 16 20 20 O 1.42889 * 112.85365 * 53.80309 * 19 18 17 21 21 C 1.53783 * 113.61130 * 282.49223 * 19 18 17 22 22 C 1.53783 * 87.08142 * 220.02136 * 21 19 18 23 23 C 1.53777 * 87.08142 * 25.43834 * 22 21 19 24 24 H 0.96998 * 120.00198 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.01027 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.90926 * 180.02562 * 14 12 11 27 27 H 1.08000 * 119.99173 * 179.72325 * 15 14 12 28 28 H 0.97000 * 120.00227 * 180.29609 * 17 16 15 29 29 H 1.09005 * 109.46776 * 300.00315 * 18 17 16 30 30 H 1.08993 * 109.47008 * 59.99999 * 18 17 16 31 31 H 0.96696 * 114.00240 * 309.66739 * 20 19 18 32 32 H 1.08997 * 113.61679 * 334.57528 * 21 19 18 33 33 H 1.09003 * 113.60910 * 105.47941 * 21 19 18 34 34 H 1.08991 * 113.61849 * 270.88515 * 22 21 19 35 35 H 1.09007 * 113.60937 * 139.97957 * 22 21 19 36 36 H 1.09001 * 113.61461 * 220.02078 * 23 22 21 37 37 H 1.08997 * 113.61791 * 89.11122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2006 0.0000 10 6 3.9733 -2.4060 -0.1063 11 6 3.2246 -3.5737 -0.0912 12 6 3.8549 -4.8005 -0.2002 13 9 3.1245 -5.9370 -0.1858 14 6 5.2331 -4.8663 -0.3240 15 6 5.9859 -3.7073 -0.3336 16 6 5.3610 -2.4731 -0.2305 17 7 6.1215 -1.2987 -0.2454 18 6 7.5789 -1.3712 -0.3765 19 6 8.1629 0.0429 -0.3646 20 8 7.7521 0.8035 0.7730 21 6 7.9975 0.7888 -1.6992 22 6 9.4199 1.3316 -1.4819 23 6 9.6790 0.0853 -0.6192 24 1 -0.4850 0.8400 0.0004 25 1 2.1500 -3.5251 0.0049 26 1 5.7209 -5.8261 -0.4093 27 1 7.0606 -3.7623 -0.4258 28 1 5.6838 -0.4364 -0.1689 29 1 7.9906 -1.9411 0.4566 30 1 7.8352 -1.8628 -1.3149 31 1 6.7971 0.7998 0.9246 32 1 7.9095 0.1274 -2.5611 33 1 7.2276 1.5601 -1.6758 34 1 9.4499 2.2653 -0.9205 35 1 10.0184 1.3645 -2.3924 36 1 10.2665 0.2885 0.2761 37 1 10.0507 -0.7685 -1.1859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819460141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:15 Heat of formation + Delta-G solvation = -69.232507 kcal Electronic energy + Delta-G solvation = -22014.897017 eV Core-core repulsion = 18480.360172 eV Total energy + Delta-G solvation = -3534.536845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.13813 -40.04555 -39.21380 -36.75740 -34.89803 -34.35204 -32.44770 -29.53431 -29.29759 -26.55369 -25.79209 -25.36070 -23.08905 -21.54526 -21.12791 -19.81283 -18.25270 -17.97528 -17.02408 -16.26200 -15.87621 -15.37038 -15.08276 -15.06440 -14.93109 -14.41880 -14.20246 -14.07267 -13.67427 -13.52628 -13.34209 -12.88765 -12.50470 -12.35954 -12.19554 -12.11468 -11.66805 -11.36977 -11.30066 -11.04440 -10.86164 -10.64348 -10.45189 -10.35740 -9.80348 -9.60237 -9.42343 -8.95215 -7.91623 -6.68253 -6.47992 -4.13057 1.96696 2.06316 3.13203 3.16997 3.25292 3.63649 3.86714 4.13303 4.30996 4.37649 4.55987 4.61644 4.62497 4.70469 5.00323 5.09402 5.24497 5.42493 5.46174 5.52485 5.57602 5.62222 5.69751 5.74180 5.87409 5.95883 6.05853 6.15894 6.20120 6.42302 6.66890 6.89661 6.94205 7.40189 7.48283 7.55655 7.80654 7.95412 8.08014 8.85923 9.43984 10.59787 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.007091 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.726384 B = 3947.954416 C = 6157.832923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.063 3.937 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.386 4.386 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.128 3.872 11 C -0.226 4.226 12 C 0.089 3.911 13 F -0.154 7.154 14 C -0.189 4.189 15 C -0.141 4.141 16 C 0.150 3.850 17 N -0.749 5.749 18 C 0.116 3.884 19 C 0.097 3.903 20 O -0.541 6.541 21 C -0.166 4.166 22 C -0.135 4.135 23 C -0.122 4.122 24 H 0.280 0.720 25 H 0.145 0.855 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.399 0.601 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.383 0.617 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.546 -0.414 -2.308 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.461 4.461 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.074 3.926 11 C -0.247 4.247 12 C 0.068 3.932 13 F -0.133 7.133 14 C -0.210 4.210 15 C -0.164 4.164 16 C 0.050 3.950 17 N -0.384 5.384 18 C -0.010 4.010 19 C 0.055 3.945 20 O -0.348 6.348 21 C -0.204 4.204 22 C -0.172 4.172 23 C -0.160 4.160 24 H 0.090 0.910 25 H 0.163 0.837 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.234 0.766 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.204 -0.022 -2.250 17.350 hybrid contribution -0.917 0.607 -0.035 1.100 sum 16.287 0.584 -2.285 16.457 Atomic orbital electron populations 1.69648 1.05542 1.28516 1.47721 1.24454 0.95031 0.98719 0.95853 0.86182 0.80203 0.81612 0.78762 1.19949 1.20742 1.18576 1.20721 0.76602 0.96674 1.52110 0.87610 1.83467 1.22803 1.24690 1.81265 1.18287 0.89488 0.85900 0.98954 1.20940 1.01888 0.90179 1.11693 1.17258 0.89008 0.81313 1.05632 1.91402 1.77931 1.49456 1.94510 1.20372 0.91660 0.98489 1.10431 1.19948 0.98694 0.89614 1.08162 1.17037 0.87398 0.87113 1.03497 1.44129 1.04065 1.06032 1.84211 1.21770 0.81589 0.96283 1.01320 1.22464 0.96157 0.89562 0.86315 1.86434 1.29083 1.72555 1.46681 1.23632 0.98069 1.00700 0.97950 1.22752 0.96678 0.97972 0.99791 1.22972 0.93475 0.99018 1.00503 0.90975 0.83742 0.86237 0.85977 0.76553 0.91989 0.91678 0.76787 0.89088 0.90820 0.89873 0.91336 0.90417 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.76 13.96 55.48 0.77 -23.99 16 2 C 0.06 1.70 5.49 -17.52 -0.10 1.60 16 3 Si 0.91 20.49 28.62 -169.99 -4.86 15.63 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.39 -10.43 9.95 30.88 0.31 -10.13 16 8 H 0.11 2.99 5.44 -52.48 -0.29 2.70 16 9 O -0.22 -5.27 7.83 -0.03 0.00 -5.27 16 10 C 0.13 2.80 6.66 -38.94 -0.26 2.54 16 11 C -0.23 -4.93 9.14 -39.36 -0.36 -5.28 16 12 C 0.09 1.74 7.29 -39.43 -0.29 1.45 16 13 F -0.15 -3.00 17.26 2.25 0.04 -2.96 16 14 C -0.19 -3.21 10.02 -39.48 -0.40 -3.61 16 15 C -0.14 -2.28 9.31 -39.41 -0.37 -2.65 16 16 C 0.15 2.75 6.67 -83.52 -0.56 2.19 16 17 N -0.75 -11.73 5.51 -58.46 -0.32 -12.06 16 18 C 0.12 1.41 4.50 -4.04 -0.02 1.39 16 19 C 0.10 1.11 1.41 -89.80 -0.13 0.98 16 20 O -0.54 -7.18 13.41 -35.23 -0.47 -7.65 16 21 C -0.17 -1.80 7.47 -25.92 -0.19 -1.99 16 22 C -0.13 -1.27 8.02 -25.92 -0.21 -1.47 16 23 C -0.12 -1.14 7.47 -25.92 -0.19 -1.33 16 24 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.15 3.35 5.64 -52.48 -0.30 3.06 16 26 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.12 1.61 6.73 -52.49 -0.35 1.26 16 28 H 0.40 6.55 6.69 -40.82 -0.27 6.27 16 29 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 30 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 31 H 0.38 4.80 7.62 45.56 0.35 5.15 16 32 H 0.09 0.93 8.04 -51.93 -0.42 0.52 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -28.59 314.33 -6.63 -35.22 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -3.77 Total: 12.65 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.76 Total: -16.32 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.45 Total: -36.04 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.47 Total: -12.92 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.96 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.86 Total: 15.63 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.59 -6.63 -35.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819460141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.008 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds