Wall clock time and date at job start Tue Mar 31 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47415 * 2 1 4 4 C 1.50702 * 109.46532 * 240.00128 * 2 1 3 5 5 H 1.08005 * 120.00149 * 239.99573 * 4 2 1 6 6 C 1.37878 * 120.00429 * 60.00475 * 4 2 1 7 7 N 1.31518 * 119.99381 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00331 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47315 * 89.99595 * 8 6 4 10 10 H 1.48505 * 109.46782 * 209.99637 * 8 6 4 11 11 H 1.48499 * 109.46582 * 329.99269 * 8 6 4 12 12 C 1.52997 * 109.47348 * 120.00613 * 2 1 3 13 13 N 1.46502 * 109.46610 * 299.99680 * 12 2 1 14 14 C 1.34779 * 119.99674 * 180.02562 * 13 12 2 15 15 O 1.21585 * 120.00525 * 0.02562 * 14 13 12 16 16 C 1.47546 * 120.00197 * 179.97438 * 14 13 12 17 17 C 1.39754 * 120.17321 * 0.02562 * 16 14 13 18 18 C 1.37767 * 119.94307 * 179.97438 * 17 16 14 19 19 C 1.38556 * 120.32169 * 0.02562 * 18 17 16 20 20 C 1.38206 * 120.36571 * 359.73935 * 19 18 17 21 21 F 1.35092 * 119.98105 * 180.25265 * 20 19 18 22 22 C 1.38927 * 120.04195 * 0.51714 * 20 19 18 23 23 O 1.35699 * 120.15905 * 179.76249 * 22 20 19 24 24 H 1.09005 * 109.46683 * 299.99883 * 1 2 3 25 25 H 1.09004 * 109.47529 * 59.99487 * 1 2 3 26 26 H 1.09004 * 109.47556 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47405 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46817 * 300.00503 * 3 2 1 29 29 H 1.08998 * 109.46918 * 59.99703 * 3 2 1 30 30 H 0.97003 * 119.99496 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47162 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47600 * 59.99593 * 12 2 1 33 33 H 0.96999 * 120.00740 * 359.97438 * 13 12 2 34 34 H 1.08000 * 120.02975 * 359.95301 * 17 16 14 35 35 H 1.08003 * 119.83774 * 180.02562 * 18 17 16 36 36 H 1.07999 * 119.81420 * 180.02562 * 19 18 17 37 37 H 0.96700 * 114.00288 * 269.72335 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3222 -1.1195 -4.0081 9 1 1.3446 -2.1614 -4.4125 10 1 2.4870 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 6 2.0400 -0.7214 1.2491 13 7 1.5517 -0.0307 2.4453 14 6 1.8778 -0.4910 3.6694 15 8 2.5775 -1.4790 3.7810 16 6 1.3865 0.2048 4.8742 17 6 0.5824 1.3411 4.7503 18 6 0.1259 1.9867 5.8785 19 6 0.4604 1.5155 7.1378 20 6 1.2508 0.3901 7.2754 21 9 1.5680 -0.0655 8.5070 22 6 1.7239 -0.2696 6.1480 23 8 2.5041 -1.3720 6.2805 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.9944 0.7581 2.3565 34 1 0.3194 1.7130 3.7711 35 1 -0.4958 2.8645 5.7808 36 1 0.0977 2.0278 8.0166 37 1 3.4513 -1.1813 6.3183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822398705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:45 Heat of formation + Delta-G solvation = -102.412925 kcal Electronic energy + Delta-G solvation = -21855.388844 eV Core-core repulsion = 18319.413188 eV Total energy + Delta-G solvation = -3535.975656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.08721 -40.32268 -38.40838 -36.93083 -36.28691 -33.39989 -31.54968 -30.43705 -29.88869 -25.88415 -25.77473 -25.19140 -23.69037 -22.69545 -20.48867 -19.05306 -18.60969 -17.94501 -16.86470 -16.27750 -16.23223 -15.78900 -15.39021 -14.97666 -14.80432 -14.64763 -14.30569 -13.75376 -13.41953 -12.95100 -12.91461 -12.67570 -12.25878 -12.19559 -11.96225 -11.42550 -11.23161 -10.92093 -10.89680 -10.71950 -10.43224 -10.23010 -9.68257 -9.63308 -9.30546 -9.22768 -8.88301 -8.83234 -8.49251 -8.35165 -6.05310 -4.15302 0.50483 0.80915 2.80823 3.26830 3.33860 3.36541 3.44273 3.61703 3.84495 4.18318 4.37597 4.50460 4.64886 4.80869 4.97769 5.21769 5.39123 5.59499 5.71152 5.82982 5.98317 6.18799 6.27897 6.39405 6.46290 6.71891 6.76408 6.88316 6.94440 6.97236 7.30543 7.51038 7.51682 7.66146 7.95440 7.96675 8.10411 8.34407 8.59050 8.85229 9.50748 10.96176 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037909 B = 0.003704 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.426707 B = 7557.396354 C = 8102.188023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.545 3.455 15 O -0.529 6.529 16 C -0.129 4.129 17 C -0.082 4.082 18 C -0.107 4.107 19 C -0.121 4.121 20 C 0.061 3.939 21 F -0.132 7.132 22 C 0.132 3.868 23 O -0.466 6.466 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.397 0.603 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 5.429 16.098 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.361 5.361 14 C 0.331 3.669 15 O -0.407 6.407 16 C -0.133 4.133 17 C -0.101 4.101 18 C -0.125 4.125 19 C -0.140 4.140 20 C 0.041 3.959 21 F -0.110 7.110 22 C 0.084 3.916 23 O -0.276 6.276 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.823 4.492 16.022 16.739 hybrid contribution 0.487 0.101 -0.644 0.814 sum -1.336 4.594 15.378 16.105 Atomic orbital electron populations 1.21841 0.97709 0.99286 1.00043 1.18374 0.92846 0.92795 0.90552 1.21833 0.98658 0.98300 1.00049 1.20976 1.31552 1.12120 0.89831 0.92388 1.24875 0.94839 0.94896 0.98860 1.69800 1.36659 1.22731 1.23261 0.86563 0.79351 0.79386 0.82536 1.20697 1.21262 1.19886 1.21777 0.98276 0.95915 0.83065 1.46256 1.52368 1.31668 1.05778 1.17919 0.81466 0.84462 0.83095 1.90791 1.37758 1.25518 1.86624 1.20529 1.01936 0.97243 0.93561 1.21437 0.95223 0.93471 0.99982 1.20973 1.00118 1.00534 0.90915 1.21243 0.98036 0.95217 0.99554 1.18011 1.02356 0.95880 0.79663 1.91504 1.91434 1.88517 1.39589 1.18432 0.95848 0.87496 0.89789 1.84799 1.21260 1.26626 1.94929 0.97611 0.89511 0.95346 0.95361 0.89521 0.97606 0.92988 0.92461 0.92446 0.76691 0.84259 0.84031 0.84018 0.74554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.05 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 4 C -0.51 -13.03 8.01 -34.44 -0.28 -13.30 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.13 9.35 55.43 0.52 -22.61 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.13 2.74 4.50 -4.04 -0.02 2.73 16 13 N -0.71 -12.36 4.91 -61.35 -0.30 -12.66 16 14 C 0.55 9.57 7.76 -12.46 -0.10 9.47 16 15 O -0.53 -11.01 15.16 -16.60 -0.25 -11.26 16 16 C -0.13 -1.80 5.88 -104.85 -0.62 -2.42 16 17 C -0.08 -0.88 9.53 -39.19 -0.37 -1.26 16 18 C -0.11 -0.91 10.02 -39.64 -0.40 -1.31 16 19 C -0.12 -1.10 10.01 -39.48 -0.40 -1.49 16 20 C 0.06 0.72 7.30 -39.34 -0.29 0.43 16 21 F -0.13 -1.63 17.11 2.25 0.04 -1.59 16 22 C 0.13 1.82 6.72 -38.65 -0.26 1.56 16 23 O -0.47 -6.78 11.44 -40.69 -0.47 -7.25 16 24 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.40 6.09 4.19 -40.82 -0.17 5.91 16 34 H 0.14 1.31 6.40 -52.49 -0.34 0.97 16 35 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.40 4.20 9.06 45.56 0.41 4.62 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -29.87 310.64 -6.61 -36.48 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.52 Total: 6.69 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.29 Total: -7.92 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.22 Total: -35.27 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.72 Total: -18.51 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.87 -6.61 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822398705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.934 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds