Wall clock time and date at job start Tue Mar 31 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47415 * 2 1 4 4 C 1.50702 * 109.46532 * 240.00128 * 2 1 3 5 5 H 1.08005 * 120.00149 * 239.99573 * 4 2 1 6 6 C 1.37878 * 120.00429 * 60.00475 * 4 2 1 7 7 N 1.31518 * 119.99381 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00331 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47315 * 89.99595 * 8 6 4 10 10 H 1.48505 * 109.46782 * 209.99637 * 8 6 4 11 11 H 1.48499 * 109.46582 * 329.99269 * 8 6 4 12 12 C 1.52997 * 109.47348 * 120.00613 * 2 1 3 13 13 N 1.46502 * 109.46610 * 299.99680 * 12 2 1 14 14 C 1.34779 * 119.99674 * 180.02562 * 13 12 2 15 15 O 1.21585 * 120.00525 * 0.02562 * 14 13 12 16 16 C 1.47546 * 120.00197 * 179.97438 * 14 13 12 17 17 C 1.39754 * 120.17321 * 0.02562 * 16 14 13 18 18 C 1.37767 * 119.94307 * 179.97438 * 17 16 14 19 19 C 1.38556 * 120.32169 * 0.02562 * 18 17 16 20 20 C 1.38206 * 120.36571 * 359.73935 * 19 18 17 21 21 F 1.35092 * 119.98105 * 180.25265 * 20 19 18 22 22 C 1.38927 * 120.04195 * 0.51714 * 20 19 18 23 23 O 1.35699 * 120.15905 * 179.76249 * 22 20 19 24 24 H 1.09005 * 109.46683 * 299.99883 * 1 2 3 25 25 H 1.09004 * 109.47529 * 59.99487 * 1 2 3 26 26 H 1.09004 * 109.47556 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47405 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46817 * 300.00503 * 3 2 1 29 29 H 1.08998 * 109.46918 * 59.99703 * 3 2 1 30 30 H 0.97003 * 119.99496 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47162 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47600 * 59.99593 * 12 2 1 33 33 H 0.96999 * 120.00740 * 359.97438 * 13 12 2 34 34 H 1.08000 * 120.02975 * 359.95301 * 17 16 14 35 35 H 1.08003 * 119.83774 * 180.02562 * 18 17 16 36 36 H 1.07999 * 119.81420 * 180.02562 * 19 18 17 37 37 H 0.96700 * 114.00288 * 269.72335 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3222 -1.1195 -4.0081 9 1 1.3446 -2.1614 -4.4125 10 1 2.4870 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 6 2.0400 -0.7214 1.2491 13 7 1.5517 -0.0307 2.4453 14 6 1.8778 -0.4910 3.6694 15 8 2.5775 -1.4790 3.7810 16 6 1.3865 0.2048 4.8742 17 6 0.5824 1.3411 4.7503 18 6 0.1259 1.9867 5.8785 19 6 0.4604 1.5155 7.1378 20 6 1.2508 0.3901 7.2754 21 9 1.5680 -0.0655 8.5070 22 6 1.7239 -0.2696 6.1480 23 8 2.5041 -1.3720 6.2805 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.9944 0.7581 2.3565 34 1 0.3194 1.7130 3.7711 35 1 -0.4958 2.8645 5.7808 36 1 0.0977 2.0278 8.0166 37 1 3.4513 -1.1813 6.3183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822398705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:44 Heat of formation + Delta-G solvation = -121.228040 kcal Electronic energy + Delta-G solvation = -21856.204728 eV Core-core repulsion = 18319.413188 eV Total energy + Delta-G solvation = -3536.791541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.98067 -41.46707 -39.66574 -38.06718 -37.78923 -35.04603 -33.04696 -31.74604 -30.75229 -27.55204 -27.53784 -26.96095 -24.84685 -23.58139 -21.79293 -20.66101 -19.80298 -19.04127 -17.86412 -17.83364 -17.25950 -17.14527 -16.53377 -16.33296 -16.25499 -16.16928 -15.25594 -14.94587 -14.84084 -14.56091 -14.52892 -14.00662 -13.42899 -13.24457 -13.12286 -13.06094 -12.80304 -12.67620 -12.59627 -12.24288 -12.13489 -11.93457 -11.48192 -11.28120 -10.86097 -10.68587 -10.39399 -10.20506 -9.87721 -9.73330 -8.01992 -6.17219 -0.41177 -0.02362 1.42972 1.46280 1.54052 1.75871 2.14661 2.48026 2.56323 2.90457 3.21899 3.29314 3.59748 3.81375 3.96316 4.18142 4.38438 4.50392 4.55953 4.70839 4.78824 4.92506 4.99965 5.06069 5.07501 5.12703 5.20187 5.20783 5.34218 5.55779 5.64320 5.68278 5.68449 6.16595 6.21811 6.44152 6.58811 6.62442 6.86274 7.23057 7.50392 8.96874 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037909 B = 0.003704 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.426707 B = 7557.396354 C = 8102.188023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.702 5.702 14 C 0.545 3.455 15 O -0.571 6.571 16 C -0.154 4.154 17 C -0.076 4.076 18 C -0.091 4.091 19 C -0.100 4.100 20 C 0.047 3.953 21 F -0.139 7.139 22 C 0.112 3.888 23 O -0.490 6.490 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.016 0.984 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.409 0.591 34 H 0.156 0.844 35 H 0.186 0.814 36 H 0.177 0.823 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 7.599 17.426 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.024 3.976 13 N -0.354 5.354 14 C 0.333 3.667 15 O -0.452 6.452 16 C -0.158 4.158 17 C -0.095 4.095 18 C -0.109 4.109 19 C -0.119 4.119 20 C 0.027 3.973 21 F -0.118 7.118 22 C 0.065 3.935 23 O -0.302 6.302 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.248 0.752 34 H 0.173 0.827 35 H 0.203 0.797 36 H 0.195 0.805 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.267 6.691 17.359 18.888 hybrid contribution 0.909 -0.532 -0.980 1.439 sum -2.357 6.159 16.379 17.657 Atomic orbital electron populations 1.21685 0.96986 0.98676 1.00572 1.18376 0.93365 0.93214 0.90072 1.21670 0.97984 0.97593 1.00583 1.21265 1.31795 1.12172 0.91616 0.93883 1.25410 0.95146 0.95569 1.00818 1.69895 1.36895 1.23162 1.23612 0.85790 0.78621 0.78522 0.80049 1.20611 1.20736 1.20204 1.21321 0.97194 0.95087 0.83970 1.46009 1.52610 1.31866 1.04906 1.18478 0.80435 0.83934 0.83901 1.90761 1.39665 1.27528 1.87259 1.20253 1.04657 0.99130 0.91713 1.21699 0.93952 0.92025 1.01851 1.21444 0.99010 1.00899 0.89509 1.21711 0.95520 0.93373 1.01294 1.18184 1.03403 0.96925 0.78799 1.91486 1.91676 1.88827 1.39791 1.18693 0.96435 0.87783 0.90635 1.84746 1.22345 1.28043 1.95095 0.94208 0.91700 0.96494 0.96287 0.91761 0.94139 0.92993 0.94050 0.94413 0.75241 0.82680 0.79685 0.80526 0.73452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 3 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 4 C -0.53 -27.73 8.01 25.60 0.21 -27.52 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.59 5.15 84.65 0.44 2.02 16 7 N -0.90 -46.79 9.35 21.45 0.20 -46.58 16 8 Si 0.94 42.20 29.54 68.60 2.03 44.22 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.15 6.25 4.50 86.38 0.39 6.64 16 13 N -0.70 -23.92 4.91 -466.26 -2.29 -26.20 16 14 C 0.54 19.14 7.76 86.70 0.67 19.81 16 15 O -0.57 -24.63 15.16 16.95 0.26 -24.37 16 16 C -0.15 -4.12 5.88 -20.02 -0.12 -4.24 16 17 C -0.08 -1.37 9.53 22.52 0.21 -1.16 16 18 C -0.09 -1.06 10.02 22.23 0.22 -0.84 16 19 C -0.10 -1.36 10.01 22.34 0.22 -1.14 16 20 C 0.05 1.00 7.30 22.43 0.16 1.17 16 21 F -0.14 -3.25 17.11 44.97 0.77 -2.48 16 22 C 0.11 3.02 6.72 22.88 0.15 3.17 16 23 O -0.49 -14.78 11.44 -69.26 -0.79 -15.57 16 24 H 0.04 1.39 6.86 -2.38 -0.02 1.38 16 25 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 26 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 29 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 30 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.41 11.58 4.19 -92.71 -0.39 11.19 16 34 H 0.16 2.23 6.40 -2.91 -0.02 2.22 16 35 H 0.19 0.67 8.06 -2.91 -0.02 0.64 16 36 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.41 9.27 9.06 -74.06 -0.67 8.60 16 Total: -1.00 -66.65 310.64 3.94 -62.71 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.06 Total: 17.31 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 3.70 Total: -9.04 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -2.09 Total: -72.79 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.54 Total: -39.95 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.77 Total: -2.48 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -66.65 3.94 -62.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822398705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.513 kcal (2) G-P(sol) polarization free energy of solvation -66.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds