Wall clock time and date at job start Tue Mar 31 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70447 * 124.59161 * 2 1 4 4 C 1.75505 * 92.44463 * 179.73406 * 3 2 1 5 5 C 1.32770 * 110.57664 * 0.02562 * 4 3 2 6 6 C 1.36011 * 124.59115 * 179.70250 * 2 1 3 7 7 C 1.47191 * 123.46217 * 0.22139 * 6 2 1 8 8 O 1.21636 * 119.99944 * 331.81915 * 7 6 2 9 9 N 1.34779 * 119.99684 * 151.81164 * 7 6 2 10 10 C 1.46498 * 120.00264 * 6.13664 * 9 7 6 11 11 C 1.50698 * 109.47168 * 97.73503 * 10 9 7 12 12 H 1.07996 * 120.00393 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99673 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00263 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99970 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47349 * 59.99554 * 15 13 11 17 17 H 1.48497 * 109.47441 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47022 * 299.99572 * 15 13 11 19 19 C 1.46496 * 119.99496 * 186.12849 * 9 7 6 20 20 C 1.52999 * 109.47129 * 95.49692 * 19 9 7 21 21 C 1.52998 * 109.47390 * 174.71329 * 20 19 9 22 22 C 1.52996 * 109.47166 * 294.71796 * 20 19 9 23 23 H 1.09000 * 109.47383 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47476 * 120.02503 * 1 2 3 25 25 H 1.09006 * 109.46874 * 240.02610 * 1 2 3 26 26 H 1.08007 * 124.70895 * 179.97438 * 4 3 2 27 27 H 1.07997 * 123.45562 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.46799 * 217.74102 * 10 9 7 29 29 H 1.09005 * 109.46501 * 337.73562 * 10 9 7 30 30 H 0.97000 * 120.00460 * 180.02562 * 14 13 11 31 31 H 1.09006 * 109.47094 * 215.49606 * 19 9 7 32 32 H 1.09002 * 109.47816 * 335.49628 * 19 9 7 33 33 H 1.09011 * 109.46911 * 54.71606 * 20 19 9 34 34 H 1.08999 * 109.47154 * 59.99982 * 21 20 19 35 35 H 1.09002 * 109.47330 * 180.02562 * 21 20 19 36 36 H 1.09004 * 109.47511 * 300.00067 * 21 20 19 37 37 H 1.08997 * 109.47376 * 65.33860 * 22 20 19 38 38 H 1.09004 * 109.46952 * 185.33893 * 22 20 19 39 39 H 1.09000 * 109.47057 * 305.33236 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4693 0.0081 5 6 3.6943 -0.8314 0.0100 6 6 2.2791 -1.1197 0.0058 7 6 1.7290 -2.4849 0.0082 8 8 0.6389 -2.7005 0.5028 9 7 2.4332 -3.4961 -0.5380 10 6 3.7998 -3.2646 -1.0124 11 6 4.7798 -3.7077 0.0432 12 1 4.4206 -4.1201 0.9745 13 6 6.1349 -3.5857 -0.1796 14 7 6.5723 -3.0821 -1.3131 15 14 7.3497 -4.1356 1.1284 16 1 7.1602 -5.5826 1.4031 17 1 8.7349 -3.8997 0.6481 18 1 7.1199 -3.3610 2.3745 19 6 1.8320 -4.8267 -0.6570 20 6 1.2297 -4.9911 -2.0537 21 6 0.7192 -6.4234 -2.2237 22 6 0.0672 -4.0115 -2.2264 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3634 -0.5142 -0.8897 25 1 -0.3633 -0.5135 0.8903 26 1 4.9537 0.8938 0.0104 27 1 4.4576 -1.5954 0.0152 28 1 3.9682 -3.8337 -1.9266 29 1 3.9390 -2.2025 -1.2146 30 1 7.5257 -2.9965 -1.4700 31 1 2.5974 -5.5866 -0.4996 32 1 1.0483 -4.9397 0.0922 33 1 1.9925 -4.7857 -2.8049 34 1 -0.0435 -6.6288 -1.4727 35 1 0.2905 -6.5406 -3.2190 36 1 1.5474 -7.1213 -2.1008 37 1 0.4460 -2.9898 -2.1999 38 1 -0.4218 -4.1930 -3.1836 39 1 -0.6509 -4.1539 -1.4189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822809355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:55 Heat of formation + Delta-G solvation = -8.166555 kcal Electronic energy + Delta-G solvation = -20797.097452 eV Core-core repulsion = 17831.421801 eV Total energy + Delta-G solvation = -2965.675651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.59198 -36.69919 -35.74948 -34.12518 -32.37401 -31.41102 -27.70868 -27.24531 -26.78699 -25.23112 -23.05191 -22.73273 -20.41426 -19.43620 -18.03596 -16.63630 -16.57777 -15.59906 -15.57565 -14.63360 -14.50160 -14.14045 -14.01578 -13.53516 -13.07047 -12.92406 -12.65750 -12.41080 -12.26739 -11.95477 -11.91149 -11.71591 -11.41735 -11.38663 -11.06664 -10.98846 -10.87445 -10.76876 -10.56348 -10.32461 -10.10639 -9.87581 -9.67277 -9.04337 -8.66306 -8.19530 -7.83562 -7.61067 -6.26267 -4.34971 1.37197 2.04546 2.43420 2.80244 3.20435 3.25490 3.28955 3.94598 4.07709 4.30730 5.04637 5.20258 5.27375 5.32608 5.40926 5.52958 5.56278 5.83909 5.91153 5.92237 6.02607 6.07195 6.16978 6.26193 6.32335 6.33793 6.39701 6.43730 6.59744 6.66215 6.74320 6.83735 6.85974 7.18774 7.22261 7.56553 7.69632 7.98058 8.37390 8.74112 9.05113 9.32676 10.78113 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.009059 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.408502 B = 3090.242153 C = 5147.112517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.159 4.159 3 S 0.116 5.884 4 C -0.248 4.248 5 C -0.099 4.099 6 C -0.154 4.154 7 C 0.579 3.421 8 O -0.568 6.568 9 N -0.586 5.586 10 C 0.212 3.788 11 C -0.540 4.540 12 H 0.063 0.937 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.895 3.105 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.124 3.876 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.136 4.136 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.161 0.839 27 H 0.208 0.792 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.268 0.732 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.683 3.513 -1.113 8.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.279 4.279 3 S 0.380 5.620 4 C -0.381 4.381 5 C -0.126 4.126 6 C -0.171 4.171 7 C 0.367 3.633 8 O -0.450 6.450 9 N -0.314 5.314 10 C 0.092 3.908 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.522 5.522 15 Si 0.722 3.278 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.000 4.000 20 C -0.132 4.132 21 C -0.199 4.199 22 C -0.193 4.193 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.179 0.821 27 H 0.224 0.776 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.322 4.978 -0.986 9.747 hybrid contribution 1.394 -1.837 0.549 2.370 sum -6.928 3.142 -0.437 7.620 Atomic orbital electron populations 1.20296 0.87579 1.01322 1.04049 1.24258 1.00854 0.96755 1.06042 1.82585 0.97152 1.08934 1.73336 1.25359 1.00716 0.97033 1.15028 1.22919 0.96390 0.97716 0.95617 1.20312 0.93298 0.93747 1.09764 1.17532 0.83950 0.84002 0.77845 1.90652 1.22115 1.84582 1.47686 1.47979 1.16371 1.08374 1.58711 1.20168 0.75753 0.99596 0.95243 1.21465 0.90768 1.42860 1.02761 0.91881 1.24971 0.98267 0.94779 0.95717 1.69924 1.15249 1.43690 1.23383 0.86585 0.79873 0.79536 0.81790 1.20021 1.21040 1.19910 1.21371 0.97880 0.84898 0.95812 1.21494 0.97946 0.95118 0.98653 1.21741 1.00904 0.96098 1.01107 1.21738 0.97863 0.99254 1.00462 0.92350 0.90892 0.89489 0.82106 0.77581 0.95043 0.91674 0.92237 0.90554 0.90660 0.91043 0.92855 0.93002 0.92627 0.93170 0.93797 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 9.09 36.00 0.33 -0.80 16 2 C -0.16 -2.83 6.33 -35.11 -0.22 -3.06 16 3 S 0.12 1.78 22.95 -107.50 -2.47 -0.69 16 4 C -0.25 -4.40 11.12 28.86 0.32 -4.08 16 5 C -0.10 -2.06 7.96 -39.02 -0.31 -2.37 16 6 C -0.15 -3.17 5.62 -104.63 -0.59 -3.75 16 7 C 0.58 12.56 6.07 -12.62 -0.08 12.49 16 8 O -0.57 -12.69 14.18 5.25 0.07 -12.62 16 9 N -0.59 -12.52 2.28 -176.42 -0.40 -12.92 16 10 C 0.21 4.97 4.69 -5.20 -0.02 4.95 16 11 C -0.54 -13.59 7.69 -34.44 -0.26 -13.85 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.07 1.69 5.21 -17.82 -0.09 1.60 16 14 N -0.89 -23.21 13.29 55.43 0.74 -22.47 16 15 Si 0.90 19.98 29.54 -169.99 -5.02 14.95 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C 0.12 2.33 4.98 -4.04 -0.02 2.31 16 20 C -0.11 -1.82 3.12 -90.62 -0.28 -2.11 16 21 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 22 C -0.14 -2.17 8.23 37.16 0.31 -1.87 16 23 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.09 1.41 7.46 -51.93 -0.39 1.02 16 26 H 0.16 2.54 8.06 -52.48 -0.42 2.12 16 27 H 0.21 4.84 3.69 -52.49 -0.19 4.65 16 28 H 0.03 0.78 7.98 -51.93 -0.41 0.37 16 29 H 0.07 1.58 3.99 -51.93 -0.21 1.37 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.08 1.45 8.11 -51.93 -0.42 1.02 16 32 H 0.08 1.43 7.20 -51.93 -0.37 1.06 16 33 H 0.07 1.24 8.00 -51.92 -0.42 0.82 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.90 7.00 -51.93 -0.36 0.53 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -26.80 327.45 -8.43 -35.24 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.70 Total: 5.63 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -0.59 Total: -12.07 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.33 Total: -35.39 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.62 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.47 Total: -0.69 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.80 -8.43 -35.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.071 kcal (2) G-P(sol) polarization free energy of solvation -26.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds