Wall clock time and date at job start Tue Mar 31 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48502 * 109.47119 * 240.00500 * 3 2 1 5 5 H 1.48509 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47220 * 119.99902 * 3 2 1 7 7 C 1.37877 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47101 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47098 * 180.02562 * 11 10 9 13 13 C 1.50709 * 109.47225 * 180.02562 * 12 11 10 14 14 O 1.20824 * 119.99439 * 359.97438 * 13 12 11 15 15 O 1.34222 * 120.00047 * 179.97438 * 13 12 11 16 16 C 1.45206 * 117.00148 * 179.97438 * 15 13 12 17 17 C 1.50694 * 109.47051 * 180.02562 * 16 15 13 18 18 C 1.38627 * 120.80410 * 359.97438 * 17 16 15 19 19 C 1.38195 * 119.19489 * 180.02562 * 18 17 16 20 20 N 1.31875 * 120.81767 * 0.02562 * 19 18 17 21 21 C 1.31842 * 121.75256 * 359.97438 * 20 19 18 22 22 C 1.38463 * 120.72564 * 359.97438 * 21 20 19 23 23 F 1.35104 * 120.44484 * 179.97438 * 22 21 20 24 24 H 0.97002 * 119.99801 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47585 * 59.99576 * 9 7 2 26 26 H 1.08998 * 109.47402 * 299.99779 * 9 7 2 27 27 H 1.09006 * 109.46955 * 60.00274 * 10 9 7 28 28 H 1.08995 * 109.47595 * 299.99727 * 10 9 7 29 29 H 1.09003 * 109.47425 * 59.99897 * 11 10 9 30 30 H 1.09006 * 109.47351 * 299.99852 * 11 10 9 31 31 H 1.08998 * 109.47431 * 59.99963 * 12 11 10 32 32 H 1.09004 * 109.47118 * 299.99405 * 12 11 10 33 33 H 1.08998 * 109.46492 * 59.99689 * 16 15 13 34 34 H 1.08997 * 109.47021 * 300.00330 * 16 15 13 35 35 H 1.08005 * 120.40564 * 0.05027 * 18 17 16 36 36 H 1.07998 * 119.58847 * 179.72759 * 19 18 17 37 37 H 1.07999 * 119.63475 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0018 13 6 1.7211 -7.4551 0.0018 14 8 0.5129 -7.4551 0.0018 15 8 2.3923 -8.6175 0.0018 16 6 1.6015 -9.8353 0.0024 17 6 2.5195 -11.0304 0.0029 18 6 3.8963 -10.8679 0.0023 19 6 4.7071 -11.9870 0.0023 20 7 4.1863 -13.1986 0.0024 21 6 2.8823 -13.3933 0.0030 22 6 2.0068 -12.3206 0.0041 23 9 0.6716 -12.5267 0.0041 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8906 28 1 2.8720 -3.6044 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8914 31 1 3.1013 -6.0918 0.8918 32 1 3.1013 -6.0927 -0.8882 33 1 0.9723 -9.8603 -0.8873 34 1 0.9730 -9.8600 0.8926 35 1 4.3300 -9.8788 0.0023 36 1 5.7804 -11.8679 -0.0026 37 1 2.4928 -14.4006 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836006508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:48 Heat of formation + Delta-G solvation = -120.022390 kcal Electronic energy + Delta-G solvation = -20264.724895 eV Core-core repulsion = 16727.985635 eV Total energy + Delta-G solvation = -3536.739260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.48048 -40.89181 -40.27386 -37.04430 -35.05262 -33.78129 -32.71088 -31.39260 -30.08312 -27.99551 -25.83556 -24.13342 -23.13371 -22.41651 -20.68270 -20.09251 -18.14767 -18.02655 -17.29231 -17.06696 -17.06661 -16.27305 -16.19532 -15.87464 -15.01857 -14.66441 -14.46924 -14.24881 -14.00884 -13.65210 -13.57704 -13.00169 -12.67414 -12.40111 -12.31679 -11.78514 -11.71272 -11.30484 -11.03274 -10.65947 -10.63794 -10.51887 -10.48711 -10.15965 -10.06203 -9.69339 -9.48443 -9.32826 -9.06599 -8.33937 -5.98804 -4.01672 0.38219 0.50098 2.13567 2.29568 3.09454 3.33261 3.37873 3.39897 3.49764 3.83933 3.95939 4.21580 4.31305 4.46047 4.64530 4.77455 4.86676 5.00555 5.13343 5.18458 5.20901 5.30264 5.36612 5.50249 5.64791 5.98946 6.06962 6.10880 6.21777 6.40671 6.70989 6.89023 7.11696 7.28920 7.63575 7.68799 7.83281 8.01478 8.42977 9.05628 9.62233 11.12433 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047518 B = 0.002245 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.107999 B =12468.891344 C =13021.646252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.110 4.110 13 C 0.462 3.538 14 O -0.500 6.500 15 O -0.358 6.358 16 C 0.107 3.893 17 C -0.080 4.080 18 C -0.122 4.122 19 C 0.091 3.909 20 N -0.459 5.459 21 C 0.078 3.922 22 C 0.053 3.947 23 F -0.126 7.126 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 -26.150 0.004 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.147 4.147 12 C -0.147 4.147 13 C 0.305 3.695 14 O -0.386 6.386 15 O -0.276 6.276 16 C 0.034 3.966 17 C -0.089 4.089 18 C -0.142 4.142 19 C -0.066 4.066 20 N -0.167 5.167 21 C -0.081 4.081 22 C 0.032 3.968 23 F -0.104 7.104 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.952 -26.784 0.003 27.940 hybrid contribution -0.581 1.539 0.001 1.645 sum 7.371 -25.246 0.003 26.300 Atomic orbital electron populations 1.69963 1.06061 1.26697 1.50724 1.25046 0.94858 0.99280 0.95388 0.86656 0.79564 0.83167 0.78576 1.20261 1.21318 1.20255 1.21225 0.92969 0.91132 1.50705 0.92735 1.19093 0.94021 0.91222 0.97373 1.21649 0.99159 0.93481 1.00441 1.21600 0.97098 0.92679 1.03334 1.21641 0.99979 0.87447 1.05664 1.24302 0.87714 0.85484 0.71975 1.90702 1.15633 1.87626 1.44600 1.86451 1.41629 1.14651 1.84894 1.21497 0.91347 0.79480 1.04325 1.20188 0.95837 0.92670 1.00184 1.22077 0.91902 1.02085 0.98105 1.22957 1.01256 0.86978 0.95391 1.67743 1.12528 1.25707 1.10748 1.22910 0.88457 0.98711 0.98014 1.18537 0.78801 0.94006 1.05479 1.91551 1.29547 1.95605 1.93725 0.92944 0.96553 0.96542 0.93164 0.93157 0.91470 0.91476 0.87672 0.87682 0.88839 0.88848 0.82493 0.81456 0.81234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 11 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.11 -1.32 5.81 -27.88 -0.16 -1.49 16 13 C 0.46 5.99 7.96 36.01 0.29 6.28 16 14 O -0.50 -8.14 15.73 -18.75 -0.29 -8.44 16 15 O -0.36 -3.83 8.80 -39.24 -0.35 -4.18 16 16 C 0.11 1.05 5.53 36.00 0.20 1.25 16 17 C -0.08 -0.69 5.92 -104.26 -0.62 -1.31 16 18 C -0.12 -0.90 9.45 -39.45 -0.37 -1.27 16 19 C 0.09 0.62 11.18 -17.55 -0.20 0.43 16 20 N -0.46 -3.87 10.36 -13.20 -0.14 -4.01 16 21 C 0.08 0.59 11.17 -17.46 -0.20 0.40 16 22 C 0.05 0.45 7.29 -39.28 -0.29 0.17 16 23 F -0.13 -1.15 16.89 2.25 0.04 -1.11 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 0.92 8.13 -51.93 -0.42 0.49 16 34 H 0.09 0.92 8.13 -51.93 -0.42 0.49 16 35 H 0.16 0.98 7.10 -52.48 -0.37 0.61 16 36 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -32.77 330.02 -7.18 -39.96 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.98 Total: -4.48 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.15 Total: -12.91 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: 0.60 Total: -30.41 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.64 Total: -12.61 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.77 -7.18 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836006508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.064 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds