Wall clock time and date at job start Tue Mar 31 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48502 * 109.47119 * 240.00500 * 3 2 1 5 5 H 1.48509 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47220 * 119.99902 * 3 2 1 7 7 C 1.37877 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47101 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47098 * 180.02562 * 11 10 9 13 13 C 1.50709 * 109.47225 * 180.02562 * 12 11 10 14 14 O 1.20824 * 119.99439 * 359.97438 * 13 12 11 15 15 O 1.34222 * 120.00047 * 179.97438 * 13 12 11 16 16 C 1.45206 * 117.00148 * 179.97438 * 15 13 12 17 17 C 1.50694 * 109.47051 * 180.02562 * 16 15 13 18 18 C 1.38627 * 120.80410 * 359.97438 * 17 16 15 19 19 C 1.38195 * 119.19489 * 180.02562 * 18 17 16 20 20 N 1.31875 * 120.81767 * 0.02562 * 19 18 17 21 21 C 1.31842 * 121.75256 * 359.97438 * 20 19 18 22 22 C 1.38463 * 120.72564 * 359.97438 * 21 20 19 23 23 F 1.35104 * 120.44484 * 179.97438 * 22 21 20 24 24 H 0.97002 * 119.99801 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47585 * 59.99576 * 9 7 2 26 26 H 1.08998 * 109.47402 * 299.99779 * 9 7 2 27 27 H 1.09006 * 109.46955 * 60.00274 * 10 9 7 28 28 H 1.08995 * 109.47595 * 299.99727 * 10 9 7 29 29 H 1.09003 * 109.47425 * 59.99897 * 11 10 9 30 30 H 1.09006 * 109.47351 * 299.99852 * 11 10 9 31 31 H 1.08998 * 109.47431 * 59.99963 * 12 11 10 32 32 H 1.09004 * 109.47118 * 299.99405 * 12 11 10 33 33 H 1.08998 * 109.46492 * 59.99689 * 16 15 13 34 34 H 1.08997 * 109.47021 * 300.00330 * 16 15 13 35 35 H 1.08005 * 120.40564 * 0.05027 * 18 17 16 36 36 H 1.07998 * 119.58847 * 179.72759 * 19 18 17 37 37 H 1.07999 * 119.63475 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0018 13 6 1.7211 -7.4551 0.0018 14 8 0.5129 -7.4551 0.0018 15 8 2.3923 -8.6175 0.0018 16 6 1.6015 -9.8353 0.0024 17 6 2.5195 -11.0304 0.0029 18 6 3.8963 -10.8679 0.0023 19 6 4.7071 -11.9870 0.0023 20 7 4.1863 -13.1986 0.0024 21 6 2.8823 -13.3933 0.0030 22 6 2.0068 -12.3206 0.0041 23 9 0.6716 -12.5267 0.0041 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8906 28 1 2.8720 -3.6044 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8914 31 1 3.1013 -6.0918 0.8918 32 1 3.1013 -6.0927 -0.8882 33 1 0.9723 -9.8603 -0.8873 34 1 0.9730 -9.8600 0.8926 35 1 4.3300 -9.8788 0.0023 36 1 5.7804 -11.8679 -0.0026 37 1 2.4928 -14.4006 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836006508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:48 Heat of formation + Delta-G solvation = -138.479312 kcal Electronic energy + Delta-G solvation = -20265.525247 eV Core-core repulsion = 16727.985635 eV Total energy + Delta-G solvation = -3537.539612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.14119 -41.77807 -40.98715 -38.04843 -36.63933 -34.69408 -34.41531 -31.95298 -31.69513 -28.92317 -27.44163 -24.95410 -24.33361 -23.34887 -22.03727 -21.47144 -18.92959 -18.78533 -18.40233 -17.98830 -17.96572 -17.82739 -17.00887 -16.75800 -16.43437 -16.22674 -15.21021 -14.99945 -14.91008 -14.56863 -14.51147 -14.41080 -13.79186 -13.74188 -13.59037 -13.28164 -12.93820 -12.79948 -12.39106 -12.23889 -12.18913 -12.16674 -11.69168 -11.37124 -11.29586 -11.06227 -10.74220 -10.71120 -10.53111 -10.06453 -8.17865 -6.29592 -0.20736 -0.08482 1.11774 1.38382 1.41923 1.45193 1.52985 2.42848 2.52788 2.89885 3.13110 3.15163 3.46481 3.56199 3.71845 3.79327 3.97231 3.98154 4.11130 4.15070 4.43129 4.54620 4.61356 4.65865 4.78392 4.80177 4.86224 4.94816 5.15676 5.20947 5.33509 5.39433 5.52793 5.57752 5.79251 5.89564 6.26305 6.63620 6.73418 6.89154 7.40046 8.93991 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047518 B = 0.002245 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.107999 B =12468.891344 C =13021.646252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.103 4.103 12 C -0.100 4.100 13 C 0.468 3.532 14 O -0.541 6.541 15 O -0.345 6.345 16 C 0.107 3.893 17 C -0.090 4.090 18 C -0.122 4.122 19 C 0.095 3.905 20 N -0.477 5.477 21 C 0.078 3.922 22 C 0.041 3.959 23 F -0.134 7.134 24 H 0.262 0.738 25 H -0.014 1.014 26 H -0.014 1.014 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.171 0.829 36 H 0.198 0.802 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 -26.572 0.004 28.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.141 4.141 12 C -0.136 4.136 13 C 0.313 3.687 14 O -0.430 6.430 15 O -0.261 6.261 16 C 0.033 3.967 17 C -0.099 4.099 18 C -0.141 4.141 19 C -0.061 4.061 20 N -0.186 5.186 21 C -0.080 4.080 22 C 0.019 3.981 23 F -0.113 7.113 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.004 0.996 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.189 0.811 36 H 0.215 0.785 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 10.908 -27.235 0.003 29.338 hybrid contribution -1.497 1.611 0.000 2.199 sum 9.410 -25.624 0.003 27.297 Atomic orbital electron populations 1.70122 1.08023 1.27767 1.51914 1.26081 0.95774 1.03705 0.94886 0.85459 0.78172 0.77815 0.79343 1.18931 1.21264 1.18917 1.21736 0.93799 0.92217 1.50163 0.91478 1.19063 0.94731 0.93725 0.94450 1.21434 0.97849 0.92258 1.01775 1.21377 0.97542 0.93362 1.01777 1.21524 0.98759 0.84898 1.08468 1.24425 0.87100 0.86311 0.70825 1.90703 1.17437 1.88184 1.46669 1.86423 1.41067 1.14367 1.84272 1.21530 0.91657 0.79454 1.04050 1.20196 0.96399 0.92126 1.01150 1.22261 0.91214 1.02998 0.97672 1.23453 1.02633 0.86269 0.93763 1.67819 1.12761 1.26569 1.11432 1.23227 0.88245 0.99396 0.97097 1.18668 0.78638 0.94341 1.06454 1.91528 1.30149 1.95663 1.93923 0.92906 0.99594 0.99580 0.91702 0.91696 0.93180 0.93184 0.84782 0.84792 0.89265 0.89275 0.81149 0.78546 0.79274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 3 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.62 5.15 30.59 0.16 -3.47 16 11 C -0.10 -3.33 4.50 30.59 0.14 -3.19 16 12 C -0.10 -2.14 5.81 29.85 0.17 -1.96 16 13 C 0.47 11.52 7.96 71.24 0.57 12.08 16 14 O -0.54 -17.74 15.73 21.97 0.35 -17.40 16 15 O -0.34 -6.75 8.80 -51.34 -0.45 -7.20 16 16 C 0.11 2.03 5.53 71.23 0.39 2.42 16 17 C -0.09 -1.46 5.92 -19.63 -0.12 -1.58 16 18 C -0.12 -1.52 9.45 22.35 0.21 -1.31 16 19 C 0.10 1.07 11.18 84.68 0.95 2.02 16 20 N -0.48 -7.15 10.36 -195.66 -2.03 -9.18 16 21 C 0.08 1.09 11.17 84.74 0.95 2.04 16 22 C 0.04 0.66 7.29 22.47 0.16 0.82 16 23 F -0.13 -2.44 16.89 44.97 0.76 -1.68 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 27 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.05 1.77 8.10 -2.38 -0.02 1.75 16 31 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 1.76 8.13 -2.39 -0.02 1.74 16 34 H 0.09 1.76 8.13 -2.39 -0.02 1.74 16 35 H 0.17 1.61 7.10 -2.91 -0.02 1.59 16 36 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -72.38 330.02 6.43 -65.95 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: 1.07 Total: 2.65 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.43 Total: -21.35 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.74 Total: -67.06 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.11 Total: -24.60 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.76 Total: -1.68 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.38 6.43 -65.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836006508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.527 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds