Wall clock time and date at job start Tue Mar 31 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.47538 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46864 * 299.99553 * 3 2 1 6 6 H 1.48499 * 109.47368 * 59.99440 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.36834 * 299.27491 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50707 * 109.46999 * 74.48981 * 14 13 12 16 16 C 1.38163 * 120.01522 * 260.00429 * 15 14 13 17 17 C 1.38434 * 120.03090 * 179.97438 * 16 15 14 18 18 F 1.35102 * 119.97062 * 179.97438 * 17 16 15 19 19 C 1.38479 * 120.05921 * 359.95850 * 17 16 15 20 20 C 1.38124 * 120.02733 * 359.97438 * 19 17 16 21 21 C 1.38683 * 120.01168 * 79.72169 * 15 14 13 22 22 O 1.35945 * 120.03115 * 0.02562 * 21 15 14 23 23 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 24 24 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00154 * 60.72676 * 10 9 7 26 26 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 27 27 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 28 28 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 29 29 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 30 30 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 31 31 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 32 32 H 1.08008 * 119.98781 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.98314 * 180.02562 * 19 17 16 34 34 H 1.08001 * 120.01241 * 180.02562 * 20 19 17 35 35 H 0.96707 * 113.99807 * 90.00334 * 22 21 15 36 36 H 1.08999 * 110.41133 * 201.79165 * 23 13 12 37 37 H 1.09001 * 110.41003 * 79.35561 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4345 -2.6020 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0947 -5.6143 -3.1765 16 6 2.1822 -6.2726 -3.9783 17 6 2.4581 -6.4753 -5.3197 18 9 1.5651 -7.1196 -6.1025 19 6 3.6483 -6.0180 -5.8599 20 6 4.5617 -5.3584 -5.0608 21 6 4.2851 -5.1518 -3.7172 22 8 5.1815 -4.4993 -2.9305 23 6 2.2350 -3.6865 -0.0722 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2334 -1.9069 1.2444 26 1 -0.6629 -2.7545 -1.0032 27 1 0.5035 -1.7313 -1.8934 28 1 0.3255 -4.7428 -1.7457 29 1 0.9060 -3.7050 -3.0847 30 1 3.6996 -5.5501 -1.1310 31 1 2.0260 -6.0964 -1.3934 32 1 1.2531 -6.6292 -3.5585 33 1 3.8621 -6.1764 -6.9066 34 1 5.4897 -5.0014 -5.4825 35 1 5.8287 -5.0798 -2.5069 36 1 3.2146 -3.3920 0.3043 37 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843425881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:00 Heat of formation + Delta-G solvation = -103.152577 kcal Electronic energy + Delta-G solvation = -22263.654344 eV Core-core repulsion = 18727.646614 eV Total energy + Delta-G solvation = -3536.007730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.91387 -39.92258 -38.13450 -36.41370 -34.95042 -32.15001 -32.02841 -29.82351 -28.80199 -27.85686 -25.56554 -24.04410 -22.76159 -21.65616 -20.21657 -19.40973 -18.33028 -17.19108 -16.98558 -16.75413 -15.78823 -15.34350 -15.21482 -14.83876 -14.61121 -14.04851 -13.91860 -13.78536 -13.51364 -13.00719 -12.95537 -12.26152 -12.11528 -11.84685 -11.68513 -11.63284 -11.17939 -11.08114 -10.87427 -10.52400 -10.42825 -10.35441 -10.25276 -9.87669 -9.09930 -9.00311 -8.52420 -8.44165 -8.08236 -7.79482 -6.11615 -4.16416 1.03147 1.09818 3.28854 3.37026 3.37672 3.43061 4.14802 4.21454 4.40422 4.56128 4.70346 4.79303 4.99637 5.17472 5.28410 5.48646 5.56775 5.75570 5.78801 5.88859 5.97194 6.02243 6.04427 6.17756 6.22235 6.36953 6.43129 6.54252 6.70085 6.90248 7.09047 7.25149 7.57778 7.69192 7.70581 7.74927 7.90952 8.26843 8.86629 9.46824 9.55685 10.96119 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.004711 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.485567 B = 5941.588755 C = 6284.257791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.249 3.751 10 O -0.595 6.595 11 C -0.120 4.120 12 C 0.032 3.968 13 N -0.486 5.486 14 C 0.086 3.914 15 C -0.065 4.065 16 C -0.132 4.132 17 C 0.084 3.916 18 F -0.142 7.142 19 C -0.143 4.143 20 C -0.122 4.122 21 C 0.123 3.877 22 O -0.477 6.477 23 C 0.054 3.946 24 H 0.264 0.736 25 H 0.382 0.618 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.384 0.616 36 H 0.078 0.922 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 -12.828 -8.307 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.209 3.791 10 O -0.404 6.404 11 C -0.159 4.159 12 C -0.096 4.096 13 N -0.210 5.210 14 C -0.042 4.042 15 C -0.066 4.066 16 C -0.152 4.152 17 C 0.065 3.935 18 F -0.121 7.121 19 C -0.162 4.162 20 C -0.141 4.141 21 C 0.077 3.923 22 O -0.286 6.286 23 C -0.073 4.073 24 H 0.074 0.926 25 H 0.233 0.767 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.239 0.761 36 H 0.097 0.903 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.936 -12.401 -8.664 16.642 hybrid contribution -0.454 0.396 0.110 0.613 sum 6.482 -12.004 -8.554 16.102 Atomic orbital electron populations 1.69710 1.05908 1.27112 1.51530 1.25006 0.94973 0.99412 0.94235 0.86425 0.80281 0.83175 0.77442 1.19635 1.21030 1.21058 1.21683 0.93626 0.90307 1.49693 0.91861 1.19249 0.86400 0.91580 0.81822 1.86081 1.52047 1.55804 1.46495 1.22849 0.98204 0.95562 0.99285 1.23221 0.88344 0.98377 0.99622 1.65392 1.21308 1.19292 1.14997 1.21054 1.00602 0.91694 0.90840 1.20063 0.93893 0.95875 0.96798 1.20963 1.00603 1.01675 0.91945 1.17614 0.88720 0.98197 0.88982 1.91486 1.66998 1.79392 1.74238 1.20939 0.93291 1.01071 1.00899 1.21269 1.00346 0.99020 0.93417 1.18261 0.90463 0.93930 0.89633 1.85008 1.44474 1.34814 1.64302 1.22995 1.00504 0.97301 0.86511 0.92592 0.76740 0.93119 0.90638 0.95459 0.91756 0.89977 0.94130 0.84698 0.84672 0.84534 0.76057 0.90329 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 10.82 55.43 0.60 -24.00 16 2 C 0.06 1.75 5.02 -17.82 -0.09 1.66 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.14 8.10 -34.44 -0.28 -14.42 16 8 H 0.06 1.77 7.53 -52.49 -0.40 1.37 16 9 C 0.25 6.29 1.05 -90.39 -0.10 6.19 16 10 O -0.60 -15.62 12.94 -35.23 -0.46 -16.08 16 11 C -0.12 -2.86 5.55 -25.35 -0.14 -3.00 16 12 C 0.03 0.64 6.06 -2.09 -0.01 0.63 16 13 N -0.49 -9.55 5.32 -231.26 -1.23 -10.78 16 14 C 0.09 1.32 4.62 -4.97 -0.02 1.30 16 15 C -0.07 -0.91 5.08 -104.48 -0.53 -1.44 16 16 C -0.13 -1.75 9.56 -39.54 -0.38 -2.13 16 17 C 0.08 1.07 7.30 -39.42 -0.29 0.78 16 18 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 19 C -0.14 -1.59 10.02 -39.53 -0.40 -1.99 16 20 C -0.12 -1.38 9.98 -39.44 -0.39 -1.78 16 21 C 0.12 1.63 6.68 -39.24 -0.26 1.37 16 22 O -0.48 -6.26 12.74 -19.57 -0.25 -6.51 16 23 C 0.05 1.18 5.74 -2.18 -0.01 1.17 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.38 10.16 7.33 45.56 0.33 10.49 16 26 H 0.05 1.21 7.98 -51.93 -0.41 0.79 16 27 H 0.07 1.98 7.23 -51.93 -0.38 1.61 16 28 H 0.03 0.51 7.75 -51.93 -0.40 0.10 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.14 7.80 -51.93 -0.41 0.73 16 31 H 0.04 0.59 7.63 -51.93 -0.40 0.19 16 32 H 0.14 1.66 8.04 -52.48 -0.42 1.24 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.38 2.95 9.06 45.56 0.41 3.37 16 36 H 0.08 1.72 7.67 -51.93 -0.40 1.33 16 37 H 0.03 0.63 7.94 -51.93 -0.41 0.21 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -30.28 313.25 -7.78 -38.06 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.28 Total: 11.73 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.90 Total: -11.65 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.63 Total: -34.78 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.71 Total: -22.58 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.28 -7.78 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.094 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds