Wall clock time and date at job start Tue Mar 31 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99495 * 2 1 4 4 H 1.48498 * 109.46686 * 264.99644 * 3 2 1 5 5 H 1.48494 * 109.47432 * 25.00063 * 3 2 1 6 6 H 1.48502 * 109.46752 * 144.99915 * 3 2 1 7 7 C 1.37868 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00201 * 185.06203 * 7 2 1 9 9 C 1.50698 * 120.00331 * 5.06115 * 7 2 1 10 10 O 1.42901 * 110.87900 * 60.74891 * 9 7 2 11 11 C 1.55147 * 110.99116 * 296.90315 * 9 7 2 12 12 C 1.54315 * 103.01950 * 206.25425 * 11 9 7 13 13 N 1.47443 * 107.23636 * 22.28631 * 12 11 9 14 14 C 1.46890 * 111.00261 * 123.25688 * 13 12 11 15 15 C 1.50694 * 109.47489 * 69.87290 * 14 13 12 16 16 C 1.38177 * 120.01830 * 260.02793 * 15 14 13 17 17 C 1.38433 * 120.03165 * 179.97438 * 16 15 14 18 18 F 1.35099 * 119.96852 * 179.97438 * 17 16 15 19 19 C 1.38477 * 120.06192 * 0.02562 * 17 16 15 20 20 C 1.38133 * 120.02598 * 359.72743 * 19 17 16 21 21 C 1.38686 * 120.01715 * 79.99917 * 15 14 13 22 22 O 1.35948 * 120.02547 * 0.02585 * 21 15 14 23 23 C 1.47851 * 108.56386 * 0.98568 * 13 12 11 24 24 H 0.96998 * 119.99940 * 359.97438 * 1 2 3 25 25 H 0.96700 * 114.00064 * 290.78028 * 10 9 7 26 26 H 1.09005 * 110.70288 * 87.86981 * 11 9 7 27 27 H 1.08998 * 110.85365 * 324.70984 * 11 9 7 28 28 H 1.09002 * 109.89069 * 262.87875 * 12 11 9 29 29 H 1.08999 * 109.88520 * 141.69208 * 12 11 9 30 30 H 1.09005 * 109.47085 * 309.87568 * 14 13 12 31 31 H 1.08995 * 109.47520 * 189.87597 * 14 13 12 32 32 H 1.08002 * 119.98270 * 359.96791 * 16 15 14 33 33 H 1.07998 * 119.98707 * 180.02562 * 19 17 16 34 34 H 1.08008 * 120.01242 * 180.29769 * 20 19 17 35 35 H 0.96704 * 113.99763 * 90.00693 * 22 21 15 36 36 H 1.09003 * 110.37006 * 94.73611 * 23 13 12 37 37 H 1.09000 * 110.36974 * 217.07460 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9854 -1.3948 5 1 1.3977 2.6809 0.5917 6 1 3.4898 1.4731 0.8031 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0831 9 6 1.2556 -2.4966 -0.1140 10 8 0.5275 -2.5592 -1.3421 11 6 0.3141 -2.7051 1.1014 12 6 0.1889 -4.2409 1.1847 13 7 1.3640 -4.8127 0.5019 14 6 2.1123 -5.7035 1.3988 15 6 1.3069 -6.9512 1.6544 16 6 0.5852 -7.0804 2.8256 17 6 -0.1552 -8.2263 3.0604 18 9 -0.8599 -8.3514 4.2063 19 6 -0.1733 -9.2448 2.1224 20 6 0.5431 -9.1161 0.9484 21 6 1.2891 -7.9703 0.7139 22 8 1.9986 -7.8445 -0.4390 23 6 2.2168 -3.7035 0.0242 24 1 -0.4850 0.8400 0.0004 25 1 -0.2208 -1.9484 -1.3872 26 1 -0.6586 -2.2485 0.9182 27 1 0.7609 -2.3049 2.0115 28 1 -0.7242 -4.5662 0.6863 29 1 0.1767 -4.5558 2.2282 30 1 2.3010 -5.1931 2.3433 31 1 3.0614 -5.9723 0.9351 32 1 0.5989 -6.2870 3.5583 33 1 -0.7516 -10.1381 2.3067 34 1 0.5250 -9.9087 0.2149 35 1 2.9037 -8.1805 -0.3824 36 1 2.9981 -3.4849 0.7522 37 1 2.6559 -3.9515 -0.9421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843425882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:03 Heat of formation + Delta-G solvation = -104.059942 kcal Electronic energy + Delta-G solvation = -22193.714138 eV Core-core repulsion = 18657.667062 eV Total energy + Delta-G solvation = -3536.047076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.91657 -39.95961 -38.16305 -36.43313 -34.82781 -32.13797 -32.01957 -29.80889 -28.77993 -28.04832 -25.68276 -24.06639 -22.78216 -21.70197 -19.92731 -19.54729 -18.34055 -17.23034 -16.89904 -16.78810 -15.76582 -15.34200 -15.16987 -14.85718 -14.70975 -14.23344 -13.94362 -13.79841 -13.55832 -13.09011 -12.59290 -12.25385 -12.23518 -11.80298 -11.75505 -11.50726 -11.23190 -11.12705 -10.98201 -10.73078 -10.40368 -10.39179 -10.24220 -9.83343 -9.21357 -9.07070 -8.59580 -8.44558 -8.04968 -7.57688 -6.18721 -4.26421 1.01977 1.09234 3.23988 3.30587 3.32622 3.37071 4.14056 4.20159 4.31293 4.59191 4.70688 4.84964 4.99949 5.09359 5.27935 5.51492 5.58152 5.73165 5.78755 5.91439 5.96032 6.00875 6.04752 6.11761 6.18794 6.42510 6.49012 6.69143 6.69377 6.88900 7.08595 7.39161 7.50646 7.64053 7.68977 7.76428 7.84148 8.20683 8.75092 9.42109 9.50949 10.88255 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029891 B = 0.004190 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.501958 B = 6681.704235 C = 7121.858331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.253 3.747 10 O -0.576 6.576 11 C -0.144 4.144 12 C 0.042 3.958 13 N -0.513 5.513 14 C 0.093 3.907 15 C -0.065 4.065 16 C -0.133 4.133 17 C 0.085 3.915 18 F -0.142 7.142 19 C -0.144 4.144 20 C -0.122 4.122 21 C 0.120 3.880 22 O -0.479 6.479 23 C 0.060 3.940 24 H 0.266 0.734 25 H 0.374 0.626 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.384 0.616 36 H 0.046 0.954 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -15.925 5.084 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.212 3.788 10 O -0.383 6.383 11 C -0.184 4.184 12 C -0.086 4.086 13 N -0.237 5.237 14 C -0.036 4.036 15 C -0.066 4.066 16 C -0.152 4.152 17 C 0.066 3.934 18 F -0.121 7.121 19 C -0.163 4.163 20 C -0.140 4.140 21 C 0.075 3.925 22 O -0.288 6.288 23 C -0.067 4.067 24 H 0.075 0.925 25 H 0.222 0.778 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.240 0.760 36 H 0.064 0.936 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.712 -16.311 4.356 16.969 hybrid contribution 0.477 1.617 1.311 2.135 sum 2.188 -14.694 5.667 15.900 Atomic orbital electron populations 1.69786 1.05954 1.27318 1.50155 1.24979 0.94942 0.99350 0.93661 0.86516 0.79721 0.82743 0.78434 1.20335 1.21208 1.19938 1.21511 0.93783 0.90890 1.51253 0.92179 1.19517 0.87392 0.90607 0.81255 1.86181 1.47771 1.65145 1.39193 1.23294 1.02656 0.91631 1.00771 1.22894 0.93889 0.96452 0.95334 1.63634 1.07291 1.18333 1.34434 1.21039 0.95745 0.90753 0.96015 1.20124 0.97910 0.96446 0.92143 1.21007 0.98179 0.97213 0.98826 1.17622 0.95919 0.96080 0.83801 1.91487 1.76681 1.96243 1.47667 1.20938 1.02225 0.99147 0.93975 1.21254 0.98260 0.97728 0.96804 1.18253 0.95960 0.92394 0.85904 1.84982 1.28393 1.84992 1.30397 1.23014 0.95022 0.89724 0.98959 0.92456 0.77818 0.90401 0.92610 0.91856 0.94628 0.94116 0.90149 0.84608 0.84670 0.84565 0.76029 0.93606 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.02 10.85 55.43 0.60 -23.42 16 2 C 0.07 1.95 5.32 -17.82 -0.09 1.85 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.41 8.26 -34.44 -0.28 -14.70 16 8 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 9 C 0.25 6.31 0.86 -89.63 -0.08 6.23 16 10 O -0.58 -15.30 13.14 -35.23 -0.46 -15.76 16 11 C -0.14 -3.35 5.33 -24.91 -0.13 -3.49 16 12 C 0.04 0.84 6.40 -2.84 -0.02 0.82 16 13 N -0.51 -10.02 5.15 -232.70 -1.20 -11.22 16 14 C 0.09 1.43 4.36 -4.98 -0.02 1.41 16 15 C -0.06 -0.91 4.96 -104.48 -0.52 -1.43 16 16 C -0.13 -1.77 8.80 -39.53 -0.35 -2.12 16 17 C 0.08 1.08 7.30 -39.42 -0.29 0.79 16 18 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 19 C -0.14 -1.58 10.02 -39.53 -0.40 -1.97 16 20 C -0.12 -1.35 9.98 -39.44 -0.39 -1.74 16 21 C 0.12 1.57 6.68 -39.24 -0.26 1.30 16 22 O -0.48 -6.05 12.74 -19.58 -0.25 -6.30 16 23 C 0.06 1.30 5.86 -2.30 -0.01 1.28 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 25 H 0.37 9.89 7.71 45.56 0.35 10.24 16 26 H 0.08 1.92 7.47 -51.93 -0.39 1.54 16 27 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.04 0.64 6.20 -51.93 -0.32 0.32 16 30 H 0.04 0.62 7.82 -51.93 -0.41 0.21 16 31 H 0.08 1.12 7.78 -51.93 -0.40 0.72 16 32 H 0.14 1.72 7.65 -52.49 -0.40 1.32 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.38 2.82 9.06 45.56 0.41 3.23 16 36 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -29.93 312.06 -7.65 -37.57 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -3.21 Total: 12.30 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -2.85 Total: -11.75 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: -0.60 Total: -34.64 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.71 Total: -22.07 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.93 -7.65 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.488 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds