Wall clock time and date at job start Tue Mar 31 2020 05:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99495 * 2 1 4 4 H 1.48498 * 109.46686 * 264.99644 * 3 2 1 5 5 H 1.48494 * 109.47432 * 25.00063 * 3 2 1 6 6 H 1.48502 * 109.46752 * 144.99915 * 3 2 1 7 7 C 1.37868 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00201 * 185.06203 * 7 2 1 9 9 C 1.50698 * 120.00331 * 5.06115 * 7 2 1 10 10 O 1.42901 * 110.87900 * 60.74891 * 9 7 2 11 11 C 1.55147 * 110.99116 * 296.90315 * 9 7 2 12 12 C 1.54315 * 103.01950 * 206.25425 * 11 9 7 13 13 N 1.47443 * 107.23636 * 22.28631 * 12 11 9 14 14 C 1.46890 * 111.00261 * 123.25688 * 13 12 11 15 15 C 1.50694 * 109.47489 * 69.87290 * 14 13 12 16 16 C 1.38177 * 120.01830 * 260.02793 * 15 14 13 17 17 C 1.38433 * 120.03165 * 179.97438 * 16 15 14 18 18 F 1.35099 * 119.96852 * 179.97438 * 17 16 15 19 19 C 1.38477 * 120.06192 * 0.02562 * 17 16 15 20 20 C 1.38133 * 120.02598 * 359.72743 * 19 17 16 21 21 C 1.38686 * 120.01715 * 79.99917 * 15 14 13 22 22 O 1.35948 * 120.02547 * 0.02585 * 21 15 14 23 23 C 1.47851 * 108.56386 * 0.98568 * 13 12 11 24 24 H 0.96998 * 119.99940 * 359.97438 * 1 2 3 25 25 H 0.96700 * 114.00064 * 290.78028 * 10 9 7 26 26 H 1.09005 * 110.70288 * 87.86981 * 11 9 7 27 27 H 1.08998 * 110.85365 * 324.70984 * 11 9 7 28 28 H 1.09002 * 109.89069 * 262.87875 * 12 11 9 29 29 H 1.08999 * 109.88520 * 141.69208 * 12 11 9 30 30 H 1.09005 * 109.47085 * 309.87568 * 14 13 12 31 31 H 1.08995 * 109.47520 * 189.87597 * 14 13 12 32 32 H 1.08002 * 119.98270 * 359.96791 * 16 15 14 33 33 H 1.07998 * 119.98707 * 180.02562 * 19 17 16 34 34 H 1.08008 * 120.01242 * 180.29769 * 20 19 17 35 35 H 0.96704 * 113.99763 * 90.00693 * 22 21 15 36 36 H 1.09003 * 110.37006 * 94.73611 * 23 13 12 37 37 H 1.09000 * 110.36974 * 217.07460 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9854 -1.3948 5 1 1.3977 2.6809 0.5917 6 1 3.4898 1.4731 0.8031 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0831 9 6 1.2556 -2.4966 -0.1140 10 8 0.5275 -2.5592 -1.3421 11 6 0.3141 -2.7051 1.1014 12 6 0.1889 -4.2409 1.1847 13 7 1.3640 -4.8127 0.5019 14 6 2.1123 -5.7035 1.3988 15 6 1.3069 -6.9512 1.6544 16 6 0.5852 -7.0804 2.8256 17 6 -0.1552 -8.2263 3.0604 18 9 -0.8599 -8.3514 4.2063 19 6 -0.1733 -9.2448 2.1224 20 6 0.5431 -9.1161 0.9484 21 6 1.2891 -7.9703 0.7139 22 8 1.9986 -7.8445 -0.4390 23 6 2.2168 -3.7035 0.0242 24 1 -0.4850 0.8400 0.0004 25 1 -0.2208 -1.9484 -1.3872 26 1 -0.6586 -2.2485 0.9182 27 1 0.7609 -2.3049 2.0115 28 1 -0.7242 -4.5662 0.6863 29 1 0.1767 -4.5558 2.2282 30 1 2.3010 -5.1931 2.3433 31 1 3.0614 -5.9723 0.9351 32 1 0.5989 -6.2870 3.5583 33 1 -0.7516 -10.1381 2.3067 34 1 0.5250 -9.9087 0.2149 35 1 2.9037 -8.1805 -0.3824 36 1 2.9981 -3.4849 0.7522 37 1 2.6559 -3.9515 -0.9421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843425882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:02 Heat of formation + Delta-G solvation = -126.899473 kcal Electronic energy + Delta-G solvation = -22194.704534 eV Core-core repulsion = 18657.667062 eV Total energy + Delta-G solvation = -3537.037472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.88481 -41.02449 -39.77102 -37.38370 -36.56420 -34.19253 -33.30553 -31.06960 -30.02874 -29.84882 -27.20470 -25.73972 -23.73292 -22.88718 -21.46999 -21.39747 -19.27146 -19.01085 -18.10701 -17.80617 -16.94524 -16.86544 -16.69295 -16.30450 -16.21883 -15.80527 -15.29474 -14.85194 -14.68712 -14.37294 -14.21568 -13.84109 -13.59321 -13.34435 -13.09219 -12.95230 -12.85308 -12.68375 -12.63482 -12.36361 -12.22608 -12.15829 -11.67583 -11.33813 -11.08283 -10.61314 -10.14402 -9.97433 -9.40320 -9.12474 -8.20530 -6.35900 0.08147 0.16121 1.40537 1.42990 1.50964 2.37607 2.43652 3.03666 3.16656 3.32274 3.34635 3.66505 3.78109 4.00476 4.06564 4.06867 4.25048 4.34858 4.42070 4.49899 4.60410 4.74662 4.86886 4.90316 4.95112 5.06176 5.12077 5.14835 5.25130 5.43921 5.45976 5.54736 5.79908 5.80154 5.96780 6.23807 6.28379 6.69510 6.95931 7.35624 7.43055 8.84737 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029891 B = 0.004190 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.501958 B = 6681.704235 C = 7121.858331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.031 3.969 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.561 4.561 8 H 0.056 0.944 9 C 0.234 3.766 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.054 3.946 13 N -0.519 5.519 14 C 0.094 3.906 15 C -0.084 4.084 16 C -0.140 4.140 17 C 0.070 3.930 18 F -0.147 7.147 19 C -0.132 4.132 20 C -0.118 4.118 21 C 0.117 3.883 22 O -0.496 6.496 23 C 0.069 3.931 24 H 0.267 0.733 25 H 0.369 0.631 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.406 0.594 36 H 0.054 0.946 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -17.333 5.399 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.169 4.169 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.195 3.805 10 O -0.393 6.393 11 C -0.174 4.174 12 C -0.073 4.073 13 N -0.243 5.243 14 C -0.034 4.034 15 C -0.086 4.086 16 C -0.159 4.159 17 C 0.051 3.949 18 F -0.126 7.126 19 C -0.151 4.151 20 C -0.136 4.136 21 C 0.071 3.929 22 O -0.309 6.309 23 C -0.058 4.058 24 H 0.076 0.924 25 H 0.216 0.784 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.153 0.847 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.235 -17.743 4.680 18.485 hybrid contribution 0.326 1.987 1.194 2.341 sum 2.561 -15.755 5.873 17.008 Atomic orbital electron populations 1.69881 1.06919 1.28010 1.50142 1.25684 0.95769 1.02255 0.93241 0.85571 0.78694 0.79013 0.78310 1.20276 1.20715 1.19367 1.21808 0.93859 0.92295 1.51993 0.92583 1.19783 0.88151 0.91509 0.81105 1.86171 1.47733 1.64980 1.40425 1.23087 1.00916 0.93834 0.99572 1.22720 0.94020 0.94014 0.96589 1.63550 1.07205 1.17584 1.35983 1.21082 0.96250 0.90620 0.95436 1.19995 0.99093 0.96329 0.93147 1.21043 0.98382 0.97717 0.98753 1.17785 0.96326 0.96581 0.84211 1.91475 1.76819 1.96278 1.48024 1.21267 1.01339 0.99357 0.93118 1.21517 0.97177 0.97678 0.97250 1.18434 0.96161 0.92712 0.85546 1.84917 1.30109 1.85454 1.30378 1.22834 0.94690 0.89270 0.99027 0.92357 0.78379 0.92557 0.93583 0.92801 0.92480 0.93743 0.88687 0.84666 0.81931 0.81914 0.73502 0.92802 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.52 10.85 21.45 0.23 -49.29 16 2 C 0.03 1.67 5.32 84.65 0.45 2.12 16 3 Si 0.96 42.45 29.54 68.60 2.03 44.47 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.56 -30.46 8.26 25.60 0.21 -30.25 16 8 H 0.06 3.00 7.79 -2.91 -0.02 2.98 16 9 C 0.23 11.86 0.86 -10.15 -0.01 11.85 16 10 O -0.59 -31.77 13.14 -148.98 -1.96 -33.73 16 11 C -0.13 -6.36 5.33 31.78 0.17 -6.19 16 12 C 0.05 2.17 6.40 86.65 0.55 2.72 16 13 N -0.52 -19.89 5.15 -890.12 -4.58 -24.47 16 14 C 0.09 2.77 4.36 85.56 0.37 3.14 16 15 C -0.08 -2.23 4.96 -19.77 -0.10 -2.33 16 16 C -0.14 -3.53 8.80 22.30 0.20 -3.34 16 17 C 0.07 1.65 7.30 22.37 0.16 1.81 16 18 F -0.15 -3.63 17.27 44.97 0.78 -2.85 16 19 C -0.13 -2.50 10.02 22.30 0.22 -2.27 16 20 C -0.12 -2.24 9.98 22.36 0.22 -2.01 16 21 C 0.12 2.78 6.68 22.49 0.15 2.93 16 22 O -0.50 -11.46 12.74 -92.97 -1.18 -12.64 16 23 C 0.07 2.99 5.86 86.77 0.51 3.50 16 24 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 25 H 0.37 20.12 7.71 -74.06 -0.57 19.55 16 26 H 0.06 2.86 7.47 -2.38 -0.02 2.84 16 27 H 0.05 2.21 8.04 -2.39 -0.02 2.19 16 28 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 2.01 6.20 -2.39 -0.01 2.00 16 30 H 0.04 1.28 7.82 -2.38 -0.02 1.26 16 31 H 0.09 2.49 7.78 -2.39 -0.02 2.47 16 32 H 0.14 3.31 7.65 -2.91 -0.02 3.29 16 33 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.41 5.00 9.06 -74.05 -0.67 4.33 16 36 H 0.05 2.21 7.70 -2.39 -0.02 2.19 16 37 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -63.40 312.06 -1.70 -65.10 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.13 Total: 31.73 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 3.12 Total: -18.32 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -4.35 Total: -73.76 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -3.14 Total: -46.37 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -63.40 -1.70 -65.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.800 kcal (2) G-P(sol) polarization free energy of solvation -63.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds