Wall clock time and date at job start Tue Mar 31 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38185 * 120.84076 * 2 1 4 4 C 1.38722 * 119.29299 * 180.02562 * 3 2 1 5 5 F 1.35097 * 119.48709 * 180.02562 * 4 3 2 6 6 N 1.32187 * 121.02363 * 0.02562 * 4 3 2 7 7 C 1.31648 * 121.85305 * 359.97261 * 6 4 3 8 8 C 1.39613 * 120.58251 * 0.03005 * 7 6 4 9 9 C 1.47600 * 120.53459 * 179.70283 * 8 7 6 10 10 O 1.21479 * 120.00140 * 173.92433 * 9 8 7 11 11 O 1.34727 * 119.99629 * 353.92055 * 9 8 7 12 12 C 1.45206 * 116.99868 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47181 * 299.99861 * 13 12 11 15 15 C 1.53007 * 109.47060 * 59.99868 * 13 12 11 16 16 C 1.50691 * 109.47374 * 179.97438 * 13 12 11 17 17 H 1.08009 * 119.99949 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00304 * 180.02562 * 16 13 12 19 19 N 1.31519 * 120.00091 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 120.00322 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47021 * 119.99646 * 20 18 16 23 23 H 1.48499 * 109.46925 * 239.99788 * 20 18 16 24 24 H 1.08999 * 109.46757 * 263.63724 * 1 2 3 25 25 H 1.09008 * 109.46933 * 23.63409 * 1 2 3 26 26 H 1.08995 * 109.47126 * 143.63275 * 1 2 3 27 27 H 1.07995 * 120.35426 * 0.02562 * 3 2 1 28 28 H 1.07990 * 119.71093 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46492 * 300.00042 * 12 11 9 30 30 H 1.08997 * 109.47207 * 59.99239 * 12 11 9 31 31 H 1.09003 * 109.47054 * 59.99998 * 14 13 12 32 32 H 1.08996 * 109.47025 * 179.97438 * 14 13 12 33 33 H 1.08991 * 109.47188 * 299.99602 * 14 13 12 34 34 H 1.09000 * 109.47145 * 59.99523 * 15 13 12 35 35 H 1.08996 * 109.47011 * 180.02562 * 15 13 12 36 36 H 1.09004 * 109.46730 * 299.99735 * 15 13 12 37 37 H 0.96997 * 120.00318 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2154 1.1865 0.0000 4 6 3.6022 1.1490 -0.0005 5 9 4.2987 2.3066 0.0000 6 7 4.2526 -0.0018 -0.0016 7 6 3.6210 -1.1569 -0.0016 8 6 2.2256 -1.2034 -0.0011 9 6 1.5185 -2.4990 -0.0077 10 8 0.3093 -2.5317 0.1040 11 8 2.2143 -3.6454 -0.1378 12 6 1.4533 -4.8821 -0.1366 13 6 2.4070 -6.0680 -0.2937 14 6 3.1681 -5.9389 -1.6147 15 6 3.4017 -6.0801 0.8688 16 6 1.6174 -7.3514 -0.2919 17 1 0.5425 -7.3240 -0.1893 18 6 2.2669 -8.5607 -0.4211 19 7 3.5756 -8.5942 -0.5465 20 14 1.2879 -10.1517 -0.4195 21 1 -0.1568 -9.8438 -0.2662 22 1 1.5082 -10.8698 -1.7005 23 1 1.7340 -11.0062 0.7101 24 1 -0.3633 -0.1139 1.0213 25 1 -0.3633 0.9415 -0.4120 26 1 -0.3633 -0.8275 -0.6093 27 1 1.6951 2.1328 0.0004 28 1 4.1871 -2.0765 -0.0020 29 1 0.9108 -4.9738 0.8043 30 1 0.7450 -4.8736 -0.9650 31 1 3.7394 -5.0106 -1.6156 32 1 3.8479 -6.7835 -1.7264 33 1 2.4596 -5.9303 -2.4429 34 1 2.8595 -6.1720 1.8100 35 1 4.0815 -6.9247 0.7567 36 1 3.9730 -5.1517 0.8678 37 1 4.0326 -9.4449 -0.6378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870289032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:57 Heat of formation + Delta-G solvation = -114.054390 kcal Electronic energy + Delta-G solvation = -21779.856670 eV Core-core repulsion = 18243.376202 eV Total energy + Delta-G solvation = -3536.480468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.24392 -42.00314 -40.63768 -38.32503 -36.69168 -35.07520 -33.33639 -32.45225 -29.31159 -27.61148 -27.54182 -27.12064 -25.65344 -23.70755 -22.35601 -20.73307 -19.37214 -18.72593 -18.47052 -17.74019 -17.55942 -17.39565 -17.14778 -16.66547 -15.77393 -15.17263 -15.08920 -15.03941 -14.72093 -14.34422 -14.27408 -13.86983 -13.73568 -13.59396 -13.36658 -13.23082 -13.10627 -12.81808 -12.57591 -12.31724 -12.11745 -11.71308 -11.55349 -11.26324 -11.18280 -10.88528 -10.83575 -10.70303 -10.38816 -10.30790 -8.02933 -6.20767 -0.80272 -0.12798 1.32524 1.43325 1.46412 1.55112 1.65510 2.29562 2.39425 2.46533 3.20829 3.20977 3.43156 3.47537 3.78644 4.08280 4.28254 4.31125 4.34752 4.50013 4.56248 4.65071 4.72206 4.86222 5.01346 5.08179 5.18418 5.21687 5.25811 5.32354 5.43186 5.60686 5.66683 5.67929 6.10910 6.20449 6.31902 6.39073 6.67758 6.85008 7.47492 8.96599 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034235 B = 0.003728 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.685400 B = 7509.674407 C = 8127.561436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.050 3.950 3 C -0.190 4.190 4 C 0.330 3.670 5 F -0.106 7.106 6 N -0.547 5.547 7 C 0.204 3.796 8 C -0.202 4.202 9 C 0.508 3.492 10 O -0.521 6.521 11 O -0.347 6.347 12 C 0.100 3.900 13 C 0.060 3.940 14 C -0.119 4.119 15 C -0.120 4.120 16 C -0.531 4.531 17 H 0.051 0.949 18 C 0.028 3.972 19 N -0.899 5.899 20 Si 0.950 3.050 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.195 0.805 28 H 0.188 0.812 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 18.737 0.900 18.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.043 3.957 3 C -0.210 4.210 4 C 0.178 3.822 5 F -0.085 7.085 6 N -0.262 5.262 7 C 0.046 3.954 8 C -0.206 4.206 9 C 0.353 3.647 10 O -0.413 6.413 11 O -0.263 6.263 12 C 0.027 3.973 13 C 0.059 3.941 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.569 4.569 17 H 0.069 0.931 18 C -0.172 4.172 19 N -0.537 5.537 20 Si 0.777 3.223 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.110 0.890 25 H 0.123 0.877 26 H 0.099 0.901 27 H 0.212 0.788 28 H 0.205 0.795 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.178 18.634 0.905 18.782 hybrid contribution -1.021 -1.104 0.010 1.504 sum -3.199 17.529 0.915 17.842 Atomic orbital electron populations 1.21192 0.86977 1.05139 1.04644 1.20588 0.98729 0.89664 0.86714 1.21924 0.91367 1.01243 1.06492 1.18695 0.87704 0.81531 0.94230 1.91653 1.80331 1.43859 1.92641 1.67109 1.42535 0.98296 1.18305 1.23066 0.90393 0.95042 0.86884 1.20129 0.95308 0.91376 1.13797 1.21055 0.85642 0.85094 0.72905 1.90764 1.15547 1.88105 1.46840 1.86540 1.42151 1.15271 1.82294 1.23305 0.94248 0.79425 1.00368 1.18286 0.92501 0.89370 0.93905 1.21626 0.99532 0.99869 0.96691 1.21632 0.99408 1.00079 0.96619 1.21234 0.93285 0.91217 1.51210 0.93072 1.25491 0.95755 1.01450 0.94489 1.69949 1.08076 1.26096 1.49620 0.85624 0.79099 0.80061 0.77528 1.19591 1.20735 1.20739 0.88967 0.87711 0.90110 0.78777 0.79524 0.92722 0.92738 0.94721 0.92022 0.96085 0.96060 0.92027 0.94649 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 8.85 71.24 0.63 -1.47 16 2 C 0.05 1.01 5.95 -19.41 -0.12 0.89 16 3 C -0.19 -3.02 9.75 22.37 0.22 -2.80 16 4 C 0.33 6.95 8.41 84.76 0.71 7.66 16 5 F -0.11 -2.16 17.29 44.97 0.78 -1.38 16 6 N -0.55 -13.91 10.36 -195.68 -2.03 -15.93 16 7 C 0.20 5.13 10.79 85.05 0.92 6.05 16 8 C -0.20 -5.20 5.89 -20.01 -0.12 -5.31 16 9 C 0.51 16.33 7.84 70.29 0.55 16.88 16 10 O -0.52 -18.13 13.29 19.90 0.26 -17.86 16 11 O -0.35 -12.61 8.17 -56.37 -0.46 -13.07 16 12 C 0.10 4.15 4.27 71.98 0.31 4.46 16 13 C 0.06 2.81 0.58 -52.93 -0.03 2.78 16 14 C -0.12 -5.54 8.11 71.98 0.58 -4.96 16 15 C -0.12 -5.54 8.11 71.98 0.58 -4.96 16 16 C -0.53 -27.72 8.01 25.60 0.21 -27.52 16 17 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 18 C 0.03 1.47 5.15 84.65 0.44 1.91 16 19 N -0.90 -48.19 9.35 21.45 0.20 -47.99 16 20 Si 0.95 41.90 29.54 68.60 2.03 43.93 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.10 1.04 8.06 -2.38 -0.02 1.02 16 26 H 0.08 1.82 5.95 -2.39 -0.01 1.80 16 27 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 28 H 0.19 4.53 7.63 -2.92 -0.02 4.51 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 32 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 36 H 0.03 1.46 7.68 -2.38 -0.02 1.44 16 37 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -58.44 314.97 6.75 -51.69 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.09 Total: 7.00 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.88 Total: -6.39 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -1.83 Total: -63.93 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.20 Total: -30.93 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.78 Total: -1.38 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -58.44 6.75 -51.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870289032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.362 kcal (2) G-P(sol) polarization free energy of solvation -58.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds