Wall clock time and date at job start Tue Mar 31 2020 05:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47538 * 300.00756 * 3 2 1 6 6 H 1.48501 * 109.47024 * 60.00912 * 3 2 1 7 7 C 1.37877 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46850 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46774 * 180.02562 * 12 11 10 14 14 O 1.21367 * 120.00245 * 359.97438 * 13 12 11 15 15 N 1.34323 * 119.99662 * 180.02562 * 13 12 11 16 16 O 1.41590 * 119.99868 * 180.02562 * 15 13 12 17 17 C 1.35807 * 114.00257 * 179.97438 * 16 15 13 18 18 C 1.38769 * 120.07577 * 89.99159 * 17 16 15 19 19 C 1.38150 * 119.95796 * 179.97438 * 18 17 16 20 20 C 1.38272 * 120.11050 * 359.97438 * 19 18 17 21 21 C 1.38285 * 120.14499 * 359.97438 * 20 19 18 22 22 C 1.38299 * 120.03545 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.05125 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00011 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47323 * 59.99766 * 9 7 2 26 26 H 1.09000 * 109.46937 * 299.99836 * 9 7 2 27 27 H 1.09001 * 109.47265 * 59.99695 * 10 9 7 28 28 H 1.09000 * 109.47075 * 299.99716 * 10 9 7 29 29 H 1.09001 * 109.47248 * 59.99914 * 11 10 9 30 30 H 1.08995 * 109.46817 * 299.99650 * 11 10 9 31 31 H 1.09001 * 109.47265 * 59.99925 * 12 11 10 32 32 H 1.09000 * 109.47075 * 299.99946 * 12 11 10 33 33 H 0.97004 * 120.00045 * 359.97438 * 15 13 12 34 34 H 1.08002 * 120.01840 * 359.96722 * 18 17 16 35 35 H 1.08007 * 119.94539 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.93068 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.98216 * 179.74871 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 2.4744 -6.1501 -0.0005 13 6 1.7208 -7.4551 -0.0005 14 8 0.5071 -7.4551 0.0004 15 7 2.3924 -8.6184 -0.0005 16 8 1.6844 -9.8446 -0.0011 17 6 2.4826 -10.9434 -0.0016 18 6 2.8914 -11.5064 1.1990 19 6 3.7030 -12.6245 1.1957 20 6 4.1082 -13.1839 -0.0021 21 6 3.7025 -12.6270 -1.2011 22 6 2.8901 -11.5078 -1.2048 23 9 2.4940 -10.9632 -2.3760 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 -0.8896 30 1 0.8539 -5.0446 0.8903 31 1 3.1017 -6.0923 0.8890 32 1 3.1004 -6.0924 -0.8910 33 1 3.3624 -8.6184 -0.0009 34 1 2.5755 -11.0708 2.1354 35 1 4.0207 -13.0628 2.1303 36 1 4.7423 -14.0582 -0.0013 37 1 4.0239 -13.0637 -2.1351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874910633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:18 Heat of formation + Delta-G solvation = -62.417514 kcal Electronic energy + Delta-G solvation = -20399.470077 eV Core-core repulsion = 16865.228752 eV Total energy + Delta-G solvation = -3534.241325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.36029 -40.24641 -39.26338 -37.41573 -34.88557 -32.97368 -32.44683 -31.31156 -30.19947 -29.29274 -25.62119 -23.58445 -23.13985 -22.48421 -20.57717 -20.00656 -19.27624 -17.95739 -17.21097 -17.01264 -16.21832 -16.15110 -15.89910 -15.74159 -15.02736 -14.61216 -14.43228 -14.36535 -13.85066 -13.83731 -13.03110 -12.86541 -12.63866 -12.41736 -12.17046 -11.73619 -11.62079 -11.51380 -10.99551 -10.55818 -10.47943 -10.42745 -10.15120 -9.61584 -9.60552 -9.34588 -9.18530 -9.16665 -8.96152 -8.29610 -5.94079 -3.96590 0.05654 0.53325 1.93120 2.66859 3.02919 3.34161 3.41334 3.45101 3.53286 4.01425 4.14866 4.30288 4.49754 4.57296 4.65343 4.68065 5.15776 5.22462 5.29362 5.38447 5.40250 5.41370 5.56958 5.70741 5.74793 6.06574 6.11134 6.25921 6.52274 6.74786 6.82481 7.01128 7.15628 7.21884 7.75642 7.91038 8.07355 8.23179 8.48760 9.11366 9.67058 11.17283 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.044122 B = 0.002298 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.458294 B =12179.522777 C =12213.245503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.105 4.105 12 C -0.123 4.123 13 C 0.521 3.479 14 O -0.514 6.514 15 N -0.598 5.598 16 O -0.090 6.090 17 C 0.005 3.995 18 C -0.075 4.075 19 C -0.128 4.128 20 C -0.072 4.072 21 C -0.155 4.155 22 C 0.115 3.885 23 F -0.123 7.123 24 H 0.259 0.741 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.406 0.594 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 -29.240 1.151 31.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.163 4.163 13 C 0.309 3.691 14 O -0.386 6.386 15 N -0.308 5.308 16 O -0.081 6.081 17 C -0.042 4.042 18 C -0.095 4.095 19 C -0.147 4.147 20 C -0.091 4.091 21 C -0.174 4.174 22 C 0.094 3.906 23 F -0.101 7.101 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.246 0.754 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.926 -29.082 1.100 31.086 hybrid contribution 0.908 0.710 -0.264 1.182 sum 11.834 -28.372 0.836 30.752 Atomic orbital electron populations 1.69984 1.06046 1.26406 1.50980 1.25049 0.94846 0.99261 0.95496 0.86552 0.80055 0.83930 0.77534 1.19792 1.21068 1.21067 1.21310 0.93008 0.91156 1.50299 0.92685 1.19110 0.94073 0.91228 0.97426 1.21655 0.99118 0.93738 1.00218 1.21522 0.97000 0.92307 1.03427 1.21812 1.00180 0.89674 1.04648 1.21454 0.89215 0.82974 0.75450 1.90776 1.13924 1.86210 1.47687 1.48466 1.07484 0.95298 1.79519 1.89308 1.18724 1.04292 1.95789 1.19056 1.01319 0.91977 0.91836 1.21598 0.94558 0.95734 0.97602 1.21221 0.98313 0.96117 0.99009 1.21240 0.97566 0.98970 0.91315 1.21222 0.99687 0.95915 1.00597 1.18339 0.96544 0.94516 0.81197 1.91572 1.88638 1.84878 1.45051 0.93091 0.96499 0.96513 0.93329 0.93322 0.91453 0.91446 0.88488 0.88508 0.75407 0.83794 0.84303 0.84214 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 12 C -0.12 -1.59 5.69 -27.88 -0.16 -1.75 16 13 C 0.52 7.85 7.96 -11.19 -0.09 7.76 16 14 O -0.51 -10.35 16.39 -12.85 -0.21 -10.56 16 15 N -0.60 -7.25 6.32 31.15 0.20 -7.05 16 16 O -0.09 -1.25 10.84 -13.70 -0.15 -1.40 16 17 C 0.00 0.05 5.82 -39.10 -0.23 -0.18 16 18 C -0.07 -0.53 9.99 -39.42 -0.39 -0.92 16 19 C -0.13 -0.60 10.04 -39.60 -0.40 -1.00 16 20 C -0.07 -0.31 10.04 -39.55 -0.40 -0.71 16 21 C -0.16 -0.95 10.02 -39.54 -0.40 -1.35 16 22 C 0.12 1.09 7.31 -39.27 -0.29 0.80 16 23 F -0.12 -1.45 17.11 2.25 0.04 -1.42 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.41 3.34 8.51 -40.82 -0.35 3.00 16 34 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.14 0.30 8.06 -52.48 -0.42 -0.12 16 36 H 0.14 0.21 8.06 -52.48 -0.42 -0.22 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -36.49 332.73 -7.51 -44.00 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.96 Total: -3.54 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -3.16 Total: -15.09 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.93 Total: -33.93 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.36 Total: -11.96 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.49 -7.51 -44.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874910633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.416 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds