Wall clock time and date at job start Tue Mar 31 2020 05:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47538 * 300.00756 * 3 2 1 6 6 H 1.48501 * 109.47024 * 60.00912 * 3 2 1 7 7 C 1.37877 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46850 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46774 * 180.02562 * 12 11 10 14 14 O 1.21367 * 120.00245 * 359.97438 * 13 12 11 15 15 N 1.34323 * 119.99662 * 180.02562 * 13 12 11 16 16 O 1.41590 * 119.99868 * 180.02562 * 15 13 12 17 17 C 1.35807 * 114.00257 * 179.97438 * 16 15 13 18 18 C 1.38769 * 120.07577 * 89.99159 * 17 16 15 19 19 C 1.38150 * 119.95796 * 179.97438 * 18 17 16 20 20 C 1.38272 * 120.11050 * 359.97438 * 19 18 17 21 21 C 1.38285 * 120.14499 * 359.97438 * 20 19 18 22 22 C 1.38299 * 120.03545 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.05125 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00011 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47323 * 59.99766 * 9 7 2 26 26 H 1.09000 * 109.46937 * 299.99836 * 9 7 2 27 27 H 1.09001 * 109.47265 * 59.99695 * 10 9 7 28 28 H 1.09000 * 109.47075 * 299.99716 * 10 9 7 29 29 H 1.09001 * 109.47248 * 59.99914 * 11 10 9 30 30 H 1.08995 * 109.46817 * 299.99650 * 11 10 9 31 31 H 1.09001 * 109.47265 * 59.99925 * 12 11 10 32 32 H 1.09000 * 109.47075 * 299.99946 * 12 11 10 33 33 H 0.97004 * 120.00045 * 359.97438 * 15 13 12 34 34 H 1.08002 * 120.01840 * 359.96722 * 18 17 16 35 35 H 1.08007 * 119.94539 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.93068 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.98216 * 179.74871 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 2.4744 -6.1501 -0.0005 13 6 1.7208 -7.4551 -0.0005 14 8 0.5071 -7.4551 0.0004 15 7 2.3924 -8.6184 -0.0005 16 8 1.6844 -9.8446 -0.0011 17 6 2.4826 -10.9434 -0.0016 18 6 2.8914 -11.5064 1.1990 19 6 3.7030 -12.6245 1.1957 20 6 4.1082 -13.1839 -0.0021 21 6 3.7025 -12.6270 -1.2011 22 6 2.8901 -11.5078 -1.2048 23 9 2.4940 -10.9632 -2.3760 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 -0.8896 30 1 0.8539 -5.0446 0.8903 31 1 3.1017 -6.0923 0.8890 32 1 3.1004 -6.0924 -0.8910 33 1 3.3624 -8.6184 -0.0009 34 1 2.5755 -11.0708 2.1354 35 1 4.0207 -13.0628 2.1303 36 1 4.7423 -14.0582 -0.0013 37 1 4.0239 -13.0637 -2.1351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874910633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:18 Heat of formation + Delta-G solvation = -85.497717 kcal Electronic energy + Delta-G solvation = -20400.470909 eV Core-core repulsion = 16865.228752 eV Total energy + Delta-G solvation = -3535.242157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.11093 -41.10494 -40.20373 -38.24898 -36.60713 -34.65263 -33.83825 -31.83175 -31.41925 -30.41242 -27.41765 -24.45642 -24.04236 -23.58365 -21.99276 -21.51441 -20.09293 -18.58474 -18.40411 -18.10546 -17.86011 -16.98550 -16.94676 -16.64916 -16.46523 -15.72156 -15.65802 -15.21741 -14.95268 -14.78653 -14.54148 -13.93198 -13.62148 -13.52483 -13.42503 -13.27510 -12.86292 -12.82160 -12.31174 -12.17629 -12.16463 -12.14803 -11.40502 -11.36763 -11.24079 -11.02693 -10.54530 -10.22460 -10.13941 -9.85223 -8.17533 -6.29515 -0.57391 0.04647 1.14186 1.41470 1.42475 1.51293 1.55905 2.42866 2.49945 2.96552 3.15401 3.28644 3.59599 3.67444 3.92868 3.98310 4.13188 4.20105 4.20907 4.56539 4.63350 4.67380 4.79194 4.87655 4.90233 4.96413 5.15380 5.18007 5.28137 5.34278 5.37814 5.52214 5.58819 5.79897 5.89688 5.90549 6.23805 6.27064 6.89610 7.17809 7.40113 8.95017 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.044122 B = 0.002298 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.458294 B =12179.522777 C =12213.245503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.010 4.010 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.016 3.984 10 C -0.094 4.094 11 C -0.098 4.098 12 C -0.110 4.110 13 C 0.521 3.479 14 O -0.578 6.578 15 N -0.581 5.581 16 O -0.123 6.123 17 C -0.027 4.027 18 C -0.078 4.078 19 C -0.116 4.116 20 C -0.056 4.056 21 C -0.152 4.152 22 C 0.086 3.914 23 F -0.147 7.147 24 H 0.262 0.738 25 H -0.016 1.016 26 H -0.015 1.015 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.424 0.576 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.151 -30.986 1.890 34.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.021 4.021 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.149 4.149 13 C 0.310 3.690 14 O -0.456 6.456 15 N -0.291 5.291 16 O -0.114 6.114 17 C -0.074 4.074 18 C -0.098 4.098 19 C -0.133 4.133 20 C -0.074 4.074 21 C -0.170 4.170 22 C 0.065 3.935 23 F -0.126 7.126 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.004 0.996 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.268 0.732 34 H 0.166 0.834 35 H 0.191 0.809 36 H 0.197 0.803 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 14.872 -30.869 1.840 34.314 hybrid contribution -0.257 1.066 -0.460 1.190 sum 14.615 -29.803 1.379 33.222 Atomic orbital electron populations 1.70145 1.08111 1.27652 1.52063 1.26117 0.95791 1.03831 0.94904 0.85317 0.79244 0.78377 0.77592 1.17943 1.20627 1.20531 1.21787 0.93809 0.92112 1.49914 0.91371 1.19083 0.94776 0.93886 0.94361 1.21439 0.97789 0.92176 1.01751 1.21303 0.97519 0.93449 1.01403 1.21697 0.98844 0.86427 1.07953 1.21757 0.88469 0.84287 0.74488 1.90752 1.16589 1.87276 1.50987 1.48232 1.08263 0.95055 1.77523 1.89297 1.20724 1.05369 1.96053 1.19396 1.03140 0.91508 0.93317 1.21751 0.94871 0.96599 0.96602 1.21652 0.96385 0.94564 1.00748 1.21747 0.96364 0.99167 0.90130 1.21541 0.98395 0.94587 1.02490 1.18725 0.98377 0.96182 0.80257 1.91504 1.89233 1.85538 1.46285 0.92909 0.99797 0.99644 0.91503 0.91748 0.93837 0.93480 0.84784 0.85331 0.73191 0.83354 0.80921 0.80272 0.81961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.61 13.29 21.45 0.28 -59.33 16 2 C -0.01 -0.56 5.46 84.66 0.46 -0.10 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.96 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.02 0.89 4.97 29.85 0.15 1.03 16 10 C -0.09 -3.78 5.15 30.60 0.16 -3.62 16 11 C -0.10 -3.57 4.50 30.60 0.14 -3.43 16 12 C -0.11 -2.68 5.69 29.85 0.17 -2.51 16 13 C 0.52 15.91 7.96 87.73 0.70 16.61 16 14 O -0.58 -24.69 16.39 14.23 0.23 -24.45 16 15 N -0.58 -14.08 6.32 -173.97 -1.10 -15.18 16 16 O -0.12 -3.55 10.84 36.36 0.39 -3.15 16 17 C -0.03 -0.55 5.82 22.58 0.13 -0.42 16 18 C -0.08 -0.98 9.99 22.38 0.22 -0.76 16 19 C -0.12 -0.64 10.04 22.26 0.22 -0.41 16 20 C -0.06 -0.24 10.04 22.29 0.22 -0.02 16 21 C -0.15 -1.50 10.02 22.30 0.22 -1.28 16 22 C 0.09 1.59 7.31 22.47 0.16 1.76 16 23 F -0.15 -3.62 17.11 44.97 0.77 -2.85 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 31 H 0.13 2.33 8.14 -2.39 -0.02 2.32 16 32 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.42 6.50 8.51 -92.71 -0.79 5.71 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.17 -0.17 8.06 -2.91 -0.02 -0.19 16 36 H 0.18 -0.56 8.06 -2.91 -0.02 -0.58 16 37 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -85.41 332.73 6.10 -79.32 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 0.29 Total: 2.73 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.20 Total: -24.10 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -0.82 Total: -74.50 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: 0.63 Total: -27.61 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.77 Total: -2.85 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -85.41 6.10 -79.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874910633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.180 kcal (2) G-P(sol) polarization free energy of solvation -85.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds