Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99747 * 2 1 4 4 H 1.48497 * 109.46744 * 239.99898 * 3 2 1 5 5 H 1.48502 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47069 * 120.00132 * 3 2 1 7 7 C 1.37877 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00202 * 162.35510 * 7 2 1 9 9 C 1.50697 * 119.99631 * 342.35652 * 7 2 1 10 10 C 1.53001 * 115.56384 * 323.91917 * 9 7 2 11 11 N 1.46900 * 109.47352 * 270.67351 * 10 9 7 12 12 C 1.46893 * 110.99849 * 82.69849 * 11 10 9 13 13 H 1.08998 * 109.47450 * 341.15963 * 12 11 10 14 14 C 1.52996 * 109.47639 * 101.16182 * 12 11 10 15 15 C 1.53002 * 109.47260 * 294.64855 * 14 12 11 16 16 O 1.42896 * 109.47353 * 184.54081 * 15 14 12 17 17 C 1.50711 * 109.46935 * 221.16093 * 12 11 10 18 18 C 1.33381 * 125.20219 * 141.02716 * 17 12 11 19 19 C 1.38428 * 114.92273 * 179.97438 * 18 17 12 20 20 C 1.33389 * 114.91455 * 0.02562 * 19 18 17 21 21 S 1.75878 * 125.19979 * 320.72049 * 17 12 11 22 22 C 1.52997 * 117.50231 * 109.61160 * 9 7 2 23 23 C 1.52996 * 117.49777 * 178.23458 * 9 7 2 24 24 H 0.96998 * 120.00173 * 4.98559 * 1 2 3 25 25 H 1.09006 * 109.46761 * 30.67542 * 10 9 7 26 26 H 1.08997 * 109.47152 * 150.67106 * 10 9 7 27 27 H 1.00905 * 110.99856 * 206.65261 * 11 10 9 28 28 H 1.09004 * 109.47074 * 54.64251 * 14 12 11 29 29 H 1.08995 * 109.47850 * 174.64236 * 14 12 11 30 30 H 1.08999 * 109.46701 * 304.54592 * 15 14 12 31 31 H 1.09008 * 109.46758 * 64.53906 * 15 14 12 32 32 H 0.96703 * 113.99510 * 179.97438 * 16 15 14 33 33 H 1.08007 * 122.54401 * 0.02562 * 18 17 12 34 34 H 1.07998 * 122.54488 * 179.97438 * 19 18 17 35 35 H 1.08005 * 125.19964 * 180.02562 * 20 19 18 36 36 H 1.08996 * 117.50529 * 214.97571 * 22 9 7 37 37 H 1.09003 * 117.49844 * 0.02562 * 22 9 7 38 38 H 1.09001 * 117.50183 * 359.97438 * 23 9 7 39 39 H 1.08998 * 117.50053 * 144.99774 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7466 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0466 -1.2161 -0.2830 9 6 1.3044 -2.4682 0.3967 10 6 0.2676 -2.3320 1.5136 11 7 0.9223 -2.5197 2.8151 12 6 1.5581 -1.2757 3.2689 13 1 1.6934 -0.6060 2.4196 14 6 0.6686 -0.6001 4.3143 15 6 -0.6430 -0.1603 3.6606 16 8 -1.4289 0.5636 4.6094 17 6 2.8997 -1.5907 3.8789 18 6 4.0027 -0.8551 3.7325 19 6 5.1202 -1.3427 4.3880 20 6 4.9247 -2.4746 5.0662 21 16 3.2485 -2.9804 4.8988 22 6 1.0257 -3.4930 -0.7046 23 6 2.1122 -3.7661 0.3373 24 1 -0.4850 0.8368 -0.0730 25 1 -0.1821 -1.3398 1.4728 26 1 -0.5072 -3.0876 1.3842 27 1 0.2685 -2.8633 3.5026 28 1 0.4552 -1.3036 5.1192 29 1 1.1823 0.2713 4.7202 30 1 -0.4259 0.4794 2.8051 31 1 -1.1949 -1.0389 3.3265 32 1 -2.2765 0.8742 4.2626 33 1 4.0223 0.0526 3.1476 34 1 6.0780 -0.8449 4.3523 35 1 5.6790 -2.9975 5.6354 36 1 0.1038 -4.0702 -0.6336 37 1 1.3493 -3.2458 -1.7157 38 1 3.1502 -3.6985 0.0113 39 1 1.9054 -4.5228 1.0941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878411695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = 9.560942 kcal Electronic energy + Delta-G solvation = -20934.727646 eV Core-core repulsion = 17969.820717 eV Total energy + Delta-G solvation = -2964.906929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.34411 -36.93382 -36.47673 -34.74999 -32.26360 -30.43612 -29.04388 -25.85488 -25.50496 -23.41636 -22.45064 -20.96860 -20.65476 -19.02338 -18.59433 -17.30435 -16.52982 -16.04688 -15.30627 -14.97586 -14.67413 -14.40466 -13.87612 -13.67994 -13.47920 -12.72063 -12.67699 -12.25798 -12.08174 -11.67806 -11.58635 -11.56305 -11.31142 -11.09399 -10.93919 -10.66550 -10.48673 -10.31614 -10.15238 -10.04904 -9.65934 -9.36882 -8.97530 -8.63196 -8.22640 -8.05170 -7.94084 -7.47406 -6.13917 -4.10624 1.52940 2.17698 2.57771 3.18781 3.24910 3.26139 3.30275 4.28139 4.44386 4.82574 5.01188 5.33362 5.42499 5.44988 5.57954 5.71718 5.78259 5.96552 6.04043 6.08468 6.15079 6.23769 6.34719 6.48250 6.57674 6.64071 6.68151 6.84944 6.89397 6.93349 7.00566 7.08006 7.18965 7.45676 7.48564 7.81426 7.84115 8.03744 8.26076 8.47500 8.83518 9.41862 10.85406 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.008293 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.073946 B = 3375.522722 C = 3742.551478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.068 3.932 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.472 4.472 8 H 0.058 0.942 9 C 0.063 3.937 10 C 0.075 3.925 11 N -0.677 5.677 12 C 0.151 3.849 13 H 0.124 0.876 14 C -0.137 4.137 15 C 0.075 3.925 16 O -0.581 6.581 17 C -0.112 4.112 18 C -0.159 4.159 19 C -0.126 4.126 20 C -0.244 4.244 21 S 0.105 5.895 22 C -0.209 4.209 23 C -0.188 4.188 24 H 0.261 0.739 25 H 0.103 0.897 26 H 0.034 0.966 27 H 0.321 0.679 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.376 0.624 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -1.558 8.881 9.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.133 4.133 3 Si 0.698 3.302 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.062 3.938 10 C -0.053 4.053 11 N -0.306 5.306 12 C 0.039 3.961 13 H 0.141 0.859 14 C -0.176 4.176 15 C -0.003 4.003 16 O -0.386 6.386 17 C -0.231 4.231 18 C -0.189 4.189 19 C -0.157 4.157 20 C -0.379 4.379 21 S 0.368 5.632 22 C -0.248 4.248 23 C -0.225 4.225 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.053 0.947 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.222 0.778 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.171 0.829 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.566 -3.031 9.587 10.176 hybrid contribution 0.257 2.538 -0.923 2.713 sum 1.823 -0.493 8.663 8.867 Atomic orbital electron populations 1.69863 1.05750 1.26655 1.49304 1.24904 0.94695 0.98622 0.95075 0.86971 0.80318 0.83572 0.79297 1.20054 1.21123 1.19676 1.20590 0.96467 0.90123 1.43783 0.92350 1.18824 0.94929 0.87941 0.92122 1.21966 0.94158 1.03052 0.86116 1.60335 1.36844 1.28262 1.05205 1.20194 0.87400 0.92181 0.96362 0.85878 1.22205 0.95092 1.01385 0.98950 1.22305 0.91574 0.95335 0.91071 1.86398 1.34575 1.75890 1.41771 1.24620 0.99575 0.97324 1.01574 1.20079 0.91923 1.02922 1.03957 1.20047 0.99515 0.96679 0.99487 1.25488 1.00369 1.02474 1.09577 1.84002 1.03965 1.27860 1.47329 1.23010 0.98219 1.07819 0.95711 1.22617 0.95103 1.03173 1.01633 0.92839 0.87946 0.94709 0.86150 0.91616 0.91083 0.92184 0.93523 0.77770 0.84778 0.85227 0.82877 0.92183 0.90931 0.91567 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.04 10.97 55.43 0.61 -21.43 16 2 C 0.07 1.71 3.93 -17.82 -0.07 1.64 16 3 Si 0.87 19.65 29.58 -169.99 -5.03 14.62 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.47 -12.10 7.96 -34.44 -0.27 -12.38 16 8 H 0.06 1.56 7.88 -52.49 -0.41 1.14 16 9 C 0.06 1.48 1.87 -155.67 -0.29 1.19 16 10 C 0.07 1.60 4.89 -3.82 -0.02 1.58 16 11 N -0.68 -12.77 5.63 -107.95 -0.61 -13.38 16 12 C 0.15 2.85 2.42 -68.87 -0.17 2.68 16 13 H 0.12 2.73 5.13 -51.93 -0.27 2.46 16 14 C -0.14 -2.33 4.88 -26.73 -0.13 -2.46 16 15 C 0.07 1.26 5.77 37.16 0.21 1.48 16 16 O -0.58 -9.05 13.66 -35.23 -0.48 -9.53 16 17 C -0.11 -2.04 5.46 -36.00 -0.20 -2.24 16 18 C -0.16 -2.84 10.04 -41.21 -0.41 -3.26 16 19 C -0.13 -1.95 10.18 -41.21 -0.42 -2.37 16 20 C -0.24 -3.55 11.23 29.04 0.33 -3.22 16 21 S 0.11 1.66 23.06 -107.50 -2.48 -0.82 16 22 C -0.21 -4.77 9.88 -26.73 -0.26 -5.03 16 23 C -0.19 -4.18 9.76 -26.73 -0.26 -4.44 16 24 H 0.26 6.35 8.32 -40.82 -0.34 6.01 16 25 H 0.10 2.31 3.24 -51.93 -0.17 2.15 16 26 H 0.03 0.73 7.88 -51.93 -0.41 0.32 16 27 H 0.32 5.45 8.08 -39.29 -0.32 5.14 16 28 H 0.07 1.05 8.03 -51.93 -0.42 0.64 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.14 7.98 -51.93 -0.41 0.72 16 31 H 0.05 0.78 6.85 -51.92 -0.36 0.43 16 32 H 0.38 4.21 9.12 45.56 0.42 4.62 16 33 H 0.13 2.45 8.06 -52.48 -0.42 2.02 16 34 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 37 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -26.68 329.75 -9.84 -36.52 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -4.86 Total: 15.87 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -1.97 Total: -26.82 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.00 Total: -34.81 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.48 Total: -9.53 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.48 Total: -0.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.68 -9.84 -36.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878411695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.078 kcal (2) G-P(sol) polarization free energy of solvation -26.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds