Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99747 * 2 1 4 4 H 1.48497 * 109.46744 * 239.99898 * 3 2 1 5 5 H 1.48502 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47069 * 120.00132 * 3 2 1 7 7 C 1.37877 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00202 * 162.35510 * 7 2 1 9 9 C 1.50697 * 119.99631 * 342.35652 * 7 2 1 10 10 C 1.53001 * 115.56384 * 323.91917 * 9 7 2 11 11 N 1.46900 * 109.47352 * 270.67351 * 10 9 7 12 12 C 1.46893 * 110.99849 * 82.69849 * 11 10 9 13 13 H 1.08998 * 109.47450 * 341.15963 * 12 11 10 14 14 C 1.52996 * 109.47639 * 101.16182 * 12 11 10 15 15 C 1.53002 * 109.47260 * 294.64855 * 14 12 11 16 16 O 1.42896 * 109.47353 * 184.54081 * 15 14 12 17 17 C 1.50711 * 109.46935 * 221.16093 * 12 11 10 18 18 C 1.33381 * 125.20219 * 141.02716 * 17 12 11 19 19 C 1.38428 * 114.92273 * 179.97438 * 18 17 12 20 20 C 1.33389 * 114.91455 * 0.02562 * 19 18 17 21 21 S 1.75878 * 125.19979 * 320.72049 * 17 12 11 22 22 C 1.52997 * 117.50231 * 109.61160 * 9 7 2 23 23 C 1.52996 * 117.49777 * 178.23458 * 9 7 2 24 24 H 0.96998 * 120.00173 * 4.98559 * 1 2 3 25 25 H 1.09006 * 109.46761 * 30.67542 * 10 9 7 26 26 H 1.08997 * 109.47152 * 150.67106 * 10 9 7 27 27 H 1.00905 * 110.99856 * 206.65261 * 11 10 9 28 28 H 1.09004 * 109.47074 * 54.64251 * 14 12 11 29 29 H 1.08995 * 109.47850 * 174.64236 * 14 12 11 30 30 H 1.08999 * 109.46701 * 304.54592 * 15 14 12 31 31 H 1.09008 * 109.46758 * 64.53906 * 15 14 12 32 32 H 0.96703 * 113.99510 * 179.97438 * 16 15 14 33 33 H 1.08007 * 122.54401 * 0.02562 * 18 17 12 34 34 H 1.07998 * 122.54488 * 179.97438 * 19 18 17 35 35 H 1.08005 * 125.19964 * 180.02562 * 20 19 18 36 36 H 1.08996 * 117.50529 * 214.97571 * 22 9 7 37 37 H 1.09003 * 117.49844 * 0.02562 * 22 9 7 38 38 H 1.09001 * 117.50183 * 359.97438 * 23 9 7 39 39 H 1.08998 * 117.50053 * 144.99774 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7466 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0466 -1.2161 -0.2830 9 6 1.3044 -2.4682 0.3967 10 6 0.2676 -2.3320 1.5136 11 7 0.9223 -2.5197 2.8151 12 6 1.5581 -1.2757 3.2689 13 1 1.6934 -0.6060 2.4196 14 6 0.6686 -0.6001 4.3143 15 6 -0.6430 -0.1603 3.6606 16 8 -1.4289 0.5636 4.6094 17 6 2.8997 -1.5907 3.8789 18 6 4.0027 -0.8551 3.7325 19 6 5.1202 -1.3427 4.3880 20 6 4.9247 -2.4746 5.0662 21 16 3.2485 -2.9804 4.8988 22 6 1.0257 -3.4930 -0.7046 23 6 2.1122 -3.7661 0.3373 24 1 -0.4850 0.8368 -0.0730 25 1 -0.1821 -1.3398 1.4728 26 1 -0.5072 -3.0876 1.3842 27 1 0.2685 -2.8633 3.5026 28 1 0.4552 -1.3036 5.1192 29 1 1.1823 0.2713 4.7202 30 1 -0.4259 0.4794 2.8051 31 1 -1.1949 -1.0389 3.3265 32 1 -2.2765 0.8742 4.2626 33 1 4.0223 0.0526 3.1476 34 1 6.0780 -0.8449 4.3523 35 1 5.6790 -2.9975 5.6354 36 1 0.1038 -4.0702 -0.6336 37 1 1.3493 -3.2458 -1.7157 38 1 3.1502 -3.6985 0.0113 39 1 1.9054 -4.5228 1.0941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878411695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = -6.889662 kcal Electronic energy + Delta-G solvation = -20935.440998 eV Core-core repulsion = 17969.820717 eV Total energy + Delta-G solvation = -2965.620280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.82117 -38.36017 -37.90566 -36.22488 -34.19926 -31.91999 -30.33134 -27.72126 -27.02010 -24.92140 -23.79120 -22.78604 -22.07296 -20.74957 -19.98663 -18.60273 -17.94941 -17.80045 -16.77259 -16.57836 -16.20276 -15.82855 -15.61110 -15.05129 -15.01232 -14.39775 -14.01324 -13.63781 -13.49215 -13.42293 -13.10366 -12.95564 -12.83470 -12.77150 -12.62501 -12.29553 -12.14281 -11.97349 -11.76971 -11.43627 -11.20092 -10.97912 -10.81420 -10.47927 -9.99702 -9.38687 -9.19773 -9.04548 -8.06195 -6.07842 0.27060 0.93758 1.32139 1.35165 1.40861 1.45576 1.97338 2.39576 2.98629 3.18166 3.41797 3.86835 3.98596 4.06598 4.24151 4.33402 4.42485 4.44567 4.65160 4.72163 4.75257 4.77340 4.82925 4.86599 4.96358 5.07899 5.14700 5.16588 5.27321 5.36023 5.41975 5.58545 5.62002 5.66489 5.71705 6.01368 6.35875 6.55297 6.76103 6.78562 6.90163 7.45989 8.90792 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.008293 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.073946 B = 3375.522722 C = 3742.551478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.049 3.951 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.491 4.491 8 H 0.037 0.963 9 C 0.045 3.955 10 C 0.083 3.917 11 N -0.672 5.672 12 C 0.158 3.842 13 H 0.088 0.912 14 C -0.129 4.129 15 C 0.085 3.915 16 O -0.586 6.586 17 C -0.143 4.143 18 C -0.172 4.172 19 C -0.139 4.139 20 C -0.230 4.230 21 S 0.124 5.876 22 C -0.211 4.211 23 C -0.174 4.174 24 H 0.263 0.737 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.334 0.666 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.395 0.605 33 H 0.118 0.882 34 H 0.153 0.847 35 H 0.188 0.812 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -2.227 10.451 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.152 4.152 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.044 3.956 10 C -0.045 4.045 11 N -0.302 5.302 12 C 0.046 3.954 13 H 0.106 0.894 14 C -0.168 4.168 15 C 0.007 3.993 16 O -0.394 6.394 17 C -0.261 4.261 18 C -0.203 4.203 19 C -0.170 4.170 20 C -0.365 4.365 21 S 0.387 5.613 22 C -0.249 4.249 23 C -0.211 4.211 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.057 0.943 27 H 0.153 0.847 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.245 0.755 33 H 0.136 0.864 34 H 0.171 0.829 35 H 0.205 0.795 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.856 -3.697 11.162 11.904 hybrid contribution 0.179 2.743 -1.402 3.086 sum 2.035 -0.954 9.760 10.016 Atomic orbital electron populations 1.69919 1.06205 1.27081 1.49169 1.25213 0.95200 1.00145 0.94665 0.86361 0.79560 0.81429 0.78967 1.20603 1.20631 1.19357 1.20608 0.95668 0.91700 1.44869 0.94501 1.18957 0.95902 0.87572 0.93141 1.21756 0.93573 1.02474 0.86734 1.60249 1.36805 1.28490 1.04626 1.19947 0.88360 0.91485 0.95632 0.89406 1.22107 0.94739 1.01306 0.98686 1.22077 0.91820 0.94936 0.90422 1.86356 1.35767 1.75767 1.41559 1.24614 0.99268 0.99081 1.03183 1.20228 0.93074 1.02678 1.04289 1.20225 0.99762 0.97370 0.99644 1.25915 1.00283 1.01797 1.08536 1.83850 1.04922 1.26272 1.46212 1.23008 0.99011 1.07849 0.95073 1.22541 0.94429 1.02716 1.01448 0.92740 0.89059 0.94347 0.84743 0.90259 0.91605 0.94657 0.93344 0.75544 0.86388 0.82926 0.79514 0.90789 0.92117 0.92406 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.78 10.97 21.45 0.24 -44.54 16 2 C 0.05 2.46 3.93 84.65 0.33 2.79 16 3 Si 0.91 40.82 29.58 68.60 2.03 42.85 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.49 -25.65 7.96 25.60 0.20 -25.44 16 8 H 0.04 2.03 7.88 -2.91 -0.02 2.01 16 9 C 0.05 2.14 1.87 -52.93 -0.10 2.04 16 10 C 0.08 3.52 4.89 86.30 0.42 3.95 16 11 N -0.67 -24.77 5.63 -495.45 -2.79 -27.56 16 12 C 0.16 5.93 2.42 44.17 0.11 6.04 16 13 H 0.09 3.97 5.13 -2.39 -0.01 3.96 16 14 C -0.13 -4.31 4.88 30.59 0.15 -4.16 16 15 C 0.09 2.84 5.77 71.98 0.42 3.26 16 16 O -0.59 -17.44 13.66 -148.98 -2.04 -19.48 16 17 C -0.14 -5.10 5.46 24.59 0.13 -4.96 16 18 C -0.17 -6.09 10.04 21.22 0.21 -5.88 16 19 C -0.14 -4.04 10.18 21.22 0.22 -3.83 16 20 C -0.23 -6.00 11.23 66.72 0.75 -5.25 16 21 S 0.12 3.64 23.06 -56.49 -1.30 2.34 16 22 C -0.21 -9.55 9.88 30.59 0.30 -9.25 16 23 C -0.17 -7.64 9.76 30.59 0.30 -7.34 16 24 H 0.26 12.80 8.32 -92.71 -0.77 12.03 16 25 H 0.09 4.13 3.24 -2.38 -0.01 4.13 16 26 H 0.04 1.57 7.88 -2.39 -0.02 1.55 16 27 H 0.33 10.82 8.08 -89.69 -0.72 10.09 16 28 H 0.08 2.41 8.03 -2.39 -0.02 2.40 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.04 1.35 7.98 -2.39 -0.02 1.33 16 31 H 0.05 1.58 6.85 -2.38 -0.02 1.57 16 32 H 0.40 8.22 9.12 -74.06 -0.68 7.54 16 33 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.07 3.10 8.03 -2.39 -0.02 3.08 16 37 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -56.13 329.75 -0.75 -56.88 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.33 Total: 37.56 kcal Atomic # 6 Polarization: -51.49 SS G_CDS: 3.44 Total: -48.04 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -2.55 Total: -72.10 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -2.04 Total: -19.48 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.30 Total: 2.34 kcal Total: -56.13 -0.75 -56.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878411695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.988 kcal (2) G-P(sol) polarization free energy of solvation -56.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds