Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33391 * 125.20029 * 2 1 4 4 C 1.38428 * 114.91849 * 179.79821 * 3 2 1 5 5 C 1.50694 * 122.53870 * 180.27185 * 4 3 2 6 6 C 1.33395 * 114.91999 * 0.42476 * 4 3 2 7 7 C 1.50698 * 125.20044 * 179.86549 * 6 4 3 8 8 C 1.50694 * 109.47166 * 89.71910 * 7 6 4 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47182 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46808 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00289 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00080 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00485 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99592 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46875 * 89.99986 * 18 16 14 20 20 H 1.48497 * 109.46872 * 210.00051 * 18 16 14 21 21 H 1.48494 * 109.47249 * 329.99828 * 18 16 14 22 22 S 1.75879 * 109.59290 * 359.60011 * 6 4 3 23 23 H 1.09008 * 109.46876 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47067 * 299.99773 * 1 2 3 25 25 H 1.09003 * 109.47337 * 60.00124 * 1 2 3 26 26 H 1.08001 * 122.54012 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47342 * 270.16403 * 5 4 3 28 28 H 1.09002 * 109.47356 * 30.16761 * 5 4 3 29 29 H 1.09004 * 109.47044 * 150.16442 * 5 4 3 30 30 H 1.08998 * 109.46890 * 329.71900 * 7 6 4 31 31 H 1.09002 * 109.46875 * 209.71702 * 7 6 4 32 32 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 33 33 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 34 34 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 35 35 H 1.09007 * 109.46593 * 299.99743 * 12 11 10 36 36 H 1.08993 * 109.47372 * 59.99485 * 12 11 10 37 37 H 1.08993 * 109.47057 * 299.99535 * 13 12 11 38 38 H 1.09001 * 109.47095 * 59.99863 * 13 12 11 39 39 H 0.96993 * 120.00178 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 0.0044 5 6 4.6622 1.9482 0.0112 6 6 3.9751 -0.4477 -0.0010 7 6 5.3861 -0.9770 -0.0007 8 6 5.8561 -1.1535 1.4201 9 8 5.1182 -0.8764 2.3419 10 7 7.0966 -1.6194 1.6666 11 6 7.5556 -1.7854 3.0479 12 6 8.9877 -2.3240 3.0481 13 6 9.4674 -2.4967 4.4907 14 6 10.8777 -3.0278 4.4909 15 1 11.3816 -3.2223 3.5557 16 6 11.5251 -3.2645 5.6850 17 7 12.7560 -3.7275 5.6852 18 14 10.6537 -2.9275 7.3026 19 1 9.9299 -4.1486 7.7387 20 1 11.6531 -2.5496 8.3339 21 1 9.6854 -1.8164 7.1212 22 16 2.5210 -1.4371 -0.0007 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8668 2.0895 0.0004 27 1 4.9109 2.2195 -1.0148 28 1 4.2556 2.8173 0.5284 29 1 5.5612 1.6074 0.5249 30 1 6.0389 -0.2713 -0.5143 31 1 5.4138 -1.9379 -0.5146 32 1 7.6869 -1.8407 0.9294 33 1 7.5301 -0.8221 3.5575 34 1 6.9027 -2.4879 3.5659 35 1 9.0137 -3.2872 2.5384 36 1 9.6403 -1.6212 2.5303 37 1 9.4415 -1.5334 5.0000 38 1 8.8148 -3.1994 5.0089 39 1 13.2113 -3.8943 6.5253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888814818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -33.734878 kcal Electronic energy + Delta-G solvation = -18741.481631 eV Core-core repulsion = 15774.697255 eV Total energy + Delta-G solvation = -2966.784376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79892 -38.37230 -35.54135 -33.59773 -33.29903 -31.60162 -30.45430 -28.48232 -27.25061 -24.97969 -22.74874 -21.76550 -20.80312 -20.01424 -18.42826 -17.35475 -17.02547 -16.67188 -15.65358 -15.49586 -14.88744 -14.42629 -14.36985 -14.13669 -13.56562 -13.39207 -13.31915 -13.24211 -12.83580 -12.67596 -12.45101 -11.98486 -11.91804 -11.73625 -11.64257 -11.49011 -11.09303 -10.90041 -10.79867 -10.21412 -9.98307 -9.79293 -9.60040 -9.24071 -8.87012 -8.56693 -8.56511 -8.35484 -6.07375 -4.06152 0.83713 1.49020 1.86983 2.52846 2.70939 3.30663 3.37914 3.40068 3.42658 4.43571 4.45755 4.59101 4.87577 4.92587 4.98744 5.16104 5.22526 5.23323 5.26728 5.34014 5.44841 5.47927 5.56573 5.59992 5.64641 5.81144 6.00223 6.00382 6.28000 6.33954 6.43121 6.43925 6.68651 6.78084 7.21530 7.34971 7.61378 7.75547 8.32132 8.49209 8.96365 9.54917 11.05827 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.002718 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.791061 B =10297.358273 C =10435.883112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.181 4.181 3 C -0.136 4.136 4 C -0.091 4.091 5 C -0.094 4.094 6 C -0.163 4.163 7 C -0.071 4.071 8 C 0.507 3.493 9 O -0.531 6.531 10 N -0.727 5.727 11 C 0.115 3.885 12 C -0.113 4.113 13 C -0.011 4.011 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 S 0.105 5.895 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.400 0.600 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.844 8.789 -16.099 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 C -0.166 4.166 4 C -0.103 4.103 5 C -0.153 4.153 6 C -0.280 4.280 7 C -0.113 4.113 8 C 0.292 3.708 9 O -0.407 6.407 10 N -0.379 5.379 11 C -0.008 4.008 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 S 0.371 5.629 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.154 0.846 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.533 7.343 -15.289 28.203 hybrid contribution 0.331 1.425 0.646 1.599 sum -22.202 8.768 -14.642 28.004 Atomic orbital electron populations 1.20310 0.87948 1.02788 1.02829 1.24396 0.99783 0.95856 1.09786 1.19848 0.92289 0.99175 1.05282 1.18713 0.94769 0.94005 1.02816 1.20510 0.97040 0.95917 1.01873 1.23493 0.97154 0.95962 1.11403 1.20158 0.91969 1.03495 0.95684 1.20448 0.81919 0.77532 0.90922 1.90727 1.54449 1.49500 1.46058 1.46161 1.14985 1.66681 1.10033 1.21646 0.96800 1.01203 0.81156 1.21704 0.91988 1.00356 1.01037 1.19504 0.97106 0.96822 0.91493 1.21093 0.96983 1.43431 0.94506 0.91004 1.25030 0.94725 0.94486 0.99242 1.69906 1.11826 1.45476 1.26966 0.86777 0.79672 0.79335 0.83531 1.20237 1.21356 1.18903 1.84134 0.96233 1.09250 1.73241 0.91555 0.90623 0.90681 0.84577 0.91294 0.91437 0.91637 0.87107 0.87962 0.76642 0.91849 0.91836 0.92114 0.92086 0.96326 0.96765 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.38 36.01 0.37 -0.20 16 2 C -0.18 -1.86 6.51 -36.00 -0.23 -2.09 16 3 C -0.14 -1.42 9.85 -41.21 -0.41 -1.83 16 4 C -0.09 -1.03 5.80 -106.25 -0.62 -1.64 16 5 C -0.09 -0.88 9.60 36.00 0.35 -0.53 16 6 C -0.16 -1.91 5.00 -36.00 -0.18 -2.09 16 7 C -0.07 -0.72 5.56 -29.04 -0.16 -0.88 16 8 C 0.51 7.08 7.82 -10.98 -0.09 7.00 16 9 O -0.53 -9.72 16.03 5.56 0.09 -9.63 16 10 N -0.73 -9.63 5.56 -60.29 -0.33 -9.97 16 11 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 12 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 22 S 0.10 1.18 23.31 -107.50 -2.51 -1.32 16 23 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.06 0.66 7.26 -51.93 -0.38 0.29 16 30 H 0.11 0.85 7.33 -51.93 -0.38 0.47 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.40 4.09 8.47 -40.82 -0.35 3.75 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 38 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -33.83 341.30 -9.28 -43.12 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.11 Total: -1.31 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -1.67 Total: -16.19 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.44 Total: -36.92 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.83 -9.28 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888814818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.381 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds