Wall clock time and date at job start Tue Mar 31 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33391 * 125.20029 * 2 1 4 4 C 1.38428 * 114.91849 * 179.79821 * 3 2 1 5 5 C 1.50694 * 122.53870 * 180.27185 * 4 3 2 6 6 C 1.33395 * 114.91999 * 0.42476 * 4 3 2 7 7 C 1.50698 * 125.20044 * 179.86549 * 6 4 3 8 8 C 1.50694 * 109.47166 * 89.71910 * 7 6 4 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47182 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46808 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00289 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00080 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00485 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99592 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46875 * 89.99986 * 18 16 14 20 20 H 1.48497 * 109.46872 * 210.00051 * 18 16 14 21 21 H 1.48494 * 109.47249 * 329.99828 * 18 16 14 22 22 S 1.75879 * 109.59290 * 359.60011 * 6 4 3 23 23 H 1.09008 * 109.46876 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47067 * 299.99773 * 1 2 3 25 25 H 1.09003 * 109.47337 * 60.00124 * 1 2 3 26 26 H 1.08001 * 122.54012 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47342 * 270.16403 * 5 4 3 28 28 H 1.09002 * 109.47356 * 30.16761 * 5 4 3 29 29 H 1.09004 * 109.47044 * 150.16442 * 5 4 3 30 30 H 1.08998 * 109.46890 * 329.71900 * 7 6 4 31 31 H 1.09002 * 109.46875 * 209.71702 * 7 6 4 32 32 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 33 33 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 34 34 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 35 35 H 1.09007 * 109.46593 * 299.99743 * 12 11 10 36 36 H 1.08993 * 109.47372 * 59.99485 * 12 11 10 37 37 H 1.08993 * 109.47057 * 299.99535 * 13 12 11 38 38 H 1.09001 * 109.47095 * 59.99863 * 13 12 11 39 39 H 0.96993 * 120.00178 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 0.0044 5 6 4.6622 1.9482 0.0112 6 6 3.9751 -0.4477 -0.0010 7 6 5.3861 -0.9770 -0.0007 8 6 5.8561 -1.1535 1.4201 9 8 5.1182 -0.8764 2.3419 10 7 7.0966 -1.6194 1.6666 11 6 7.5556 -1.7854 3.0479 12 6 8.9877 -2.3240 3.0481 13 6 9.4674 -2.4967 4.4907 14 6 10.8777 -3.0278 4.4909 15 1 11.3816 -3.2223 3.5557 16 6 11.5251 -3.2645 5.6850 17 7 12.7560 -3.7275 5.6852 18 14 10.6537 -2.9275 7.3026 19 1 9.9299 -4.1486 7.7387 20 1 11.6531 -2.5496 8.3339 21 1 9.6854 -1.8164 7.1212 22 16 2.5210 -1.4371 -0.0007 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8668 2.0895 0.0004 27 1 4.9109 2.2195 -1.0148 28 1 4.2556 2.8173 0.5284 29 1 5.5612 1.6074 0.5249 30 1 6.0389 -0.2713 -0.5143 31 1 5.4138 -1.9379 -0.5146 32 1 7.6869 -1.8407 0.9294 33 1 7.5301 -0.8221 3.5575 34 1 6.9027 -2.4879 3.5659 35 1 9.0137 -3.2872 2.5384 36 1 9.6403 -1.6212 2.5303 37 1 9.4415 -1.5334 5.0000 38 1 8.8148 -3.1994 5.0089 39 1 13.2113 -3.8943 6.5253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888814818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:32 Heat of formation + Delta-G solvation = -54.881690 kcal Electronic energy + Delta-G solvation = -18742.398626 eV Core-core repulsion = 15774.697255 eV Total energy + Delta-G solvation = -2967.701371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87441 -39.21367 -36.98727 -35.13965 -34.36205 -33.30852 -31.40027 -29.19958 -28.84004 -26.00225 -24.32404 -22.50691 -22.24726 -21.38577 -19.28155 -18.93848 -18.13087 -17.96011 -16.86088 -16.73074 -16.20002 -15.68878 -15.59230 -15.18764 -14.79241 -14.51122 -14.29033 -14.07084 -13.94849 -13.81470 -13.63996 -13.51308 -13.06439 -12.73961 -12.69929 -12.48230 -12.35591 -12.21099 -11.92470 -11.78550 -11.60134 -11.59291 -11.33796 -10.93175 -10.76928 -10.08078 -9.36663 -9.16151 -8.30047 -6.33787 0.03933 0.71438 1.07981 1.36018 1.37656 1.49354 1.63691 1.73139 2.32874 2.35535 3.05654 3.64056 3.91089 3.97493 4.13752 4.16691 4.22188 4.35248 4.49845 4.50333 4.54453 4.62634 4.73615 4.75240 4.83247 4.88254 4.92706 5.02571 5.03516 5.14531 5.27276 5.39570 5.50029 5.51954 5.55203 5.64597 5.68803 6.26866 6.58612 6.74413 7.26912 7.31103 8.86282 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.002718 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.791061 B =10297.358273 C =10435.883112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.180 4.180 3 C -0.151 4.151 4 C -0.100 4.100 5 C -0.093 4.093 6 C -0.184 4.184 7 C -0.063 4.063 8 C 0.508 3.492 9 O -0.578 6.578 10 N -0.717 5.717 11 C 0.128 3.872 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.530 4.530 15 H 0.039 0.961 16 C 0.005 3.995 17 N -0.950 5.950 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.249 1.249 22 S 0.074 5.926 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.155 0.845 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.416 0.584 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.543 9.875 -16.728 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 C -0.181 4.181 4 C -0.112 4.112 5 C -0.152 4.152 6 C -0.301 4.301 7 C -0.105 4.105 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.370 5.370 11 C 0.004 3.996 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.568 4.568 15 H 0.057 0.943 16 C -0.192 4.192 17 N -0.590 5.590 18 Si 0.770 3.230 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.172 1.172 22 S 0.341 5.659 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.172 0.828 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.143 0.857 32 H 0.253 0.747 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.225 8.428 -15.964 30.212 hybrid contribution 0.869 1.093 0.766 1.593 sum -23.356 9.521 -15.198 29.447 Atomic orbital electron populations 1.20425 0.85954 1.03499 1.04045 1.24813 1.01143 0.95054 1.08751 1.20140 0.92234 1.00166 1.05557 1.19091 0.95644 0.94464 1.02041 1.20548 0.96096 0.95417 1.03127 1.23715 0.97628 0.96213 1.12544 1.20206 0.91646 1.05482 0.93117 1.21093 0.81224 0.76138 0.92101 1.90707 1.55661 1.51507 1.47834 1.45980 1.15344 1.66371 1.09266 1.21262 0.95158 1.00287 0.82916 1.21476 0.93243 1.00990 0.98023 1.19472 0.94383 0.96425 0.94806 1.21462 0.99110 1.42937 0.93281 0.94293 1.25977 0.95430 0.94431 1.03390 1.70050 1.13662 1.47201 1.28118 0.85710 0.78759 0.79885 0.78630 1.19315 1.20976 1.17244 1.84164 0.97289 1.10623 1.73862 0.91141 0.89832 0.88861 0.82759 0.89204 0.90960 0.92587 0.84320 0.85692 0.74660 0.92682 0.92816 0.91656 0.91516 0.96186 0.96403 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.38 71.24 0.74 -0.27 16 2 C -0.18 -3.47 6.51 24.59 0.16 -3.31 16 3 C -0.15 -2.94 9.85 21.22 0.21 -2.73 16 4 C -0.10 -2.11 5.80 -20.92 -0.12 -2.23 16 5 C -0.09 -1.55 9.60 71.23 0.68 -0.86 16 6 C -0.18 -4.06 5.00 24.59 0.12 -3.93 16 7 C -0.06 -1.15 5.56 29.10 0.16 -0.98 16 8 C 0.51 13.42 7.82 87.65 0.69 14.10 16 9 O -0.58 -20.81 16.03 -3.04 -0.05 -20.86 16 10 N -0.72 -17.66 5.56 -463.05 -2.57 -20.23 16 11 C 0.13 4.03 5.67 86.38 0.49 4.52 16 12 C -0.10 -3.54 5.27 30.60 0.16 -3.38 16 13 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 14 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 15 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 16 C 0.00 0.27 5.47 84.66 0.46 0.73 16 17 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 18 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 22 S 0.07 1.63 23.31 -56.49 -1.32 0.31 16 23 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.11 8.13 -2.39 -0.02 1.10 16 29 H 0.06 1.03 7.26 -2.38 -0.02 1.02 16 30 H 0.14 1.71 7.33 -2.39 -0.02 1.70 16 31 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.42 7.47 8.47 -92.71 -0.79 6.69 16 33 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 38 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 39 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -73.75 341.30 2.57 -71.18 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.20 Total: 10.76 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 4.12 Total: -28.60 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -2.27 Total: -79.23 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.32 Total: 0.31 kcal Total: -73.75 2.57 -71.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888814818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.300 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds