Wall clock time and date at job start Tue Mar 31 2020 05:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00310 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99527 * 3 2 1 5 5 H 1.48494 * 109.47191 * 29.99477 * 3 2 1 6 6 H 1.48501 * 109.46989 * 150.00083 * 3 2 1 7 7 C 1.37884 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47348 * 179.97438 * 10 9 7 12 12 C 1.52989 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47090 * 179.97438 * 12 11 10 14 14 O 1.21373 * 119.99905 * 0.02562 * 13 12 11 15 15 N 1.34319 * 119.99866 * 180.02562 * 13 12 11 16 16 O 1.41605 * 119.99734 * 180.02562 * 15 13 12 17 17 C 1.35794 * 113.99777 * 180.02562 * 16 15 13 18 18 C 1.38805 * 120.04117 * 269.71945 * 17 16 15 19 19 C 1.38133 * 119.95672 * 179.77319 * 18 17 16 20 20 C 1.38462 * 120.03963 * 0.50698 * 19 18 17 21 21 F 1.35102 * 119.95453 * 179.72394 * 20 19 18 22 22 C 1.38460 * 120.08449 * 359.74822 * 20 19 18 23 23 C 1.38127 * 120.03968 * 0.02562 * 22 20 19 24 24 H 0.97000 * 119.99148 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47662 * 60.00116 * 9 7 2 26 26 H 1.09004 * 109.47237 * 299.99957 * 9 7 2 27 27 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 28 28 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 29 29 H 1.09000 * 109.46866 * 59.99785 * 11 10 9 30 30 H 1.08993 * 109.46765 * 300.00186 * 11 10 9 31 31 H 1.09000 * 109.47099 * 60.00324 * 12 11 10 32 32 H 1.08993 * 109.47772 * 299.99965 * 12 11 10 33 33 H 0.96999 * 120.00326 * 0.02562 * 15 13 12 34 34 H 1.07997 * 120.02172 * 0.02562 * 18 17 16 35 35 H 1.08008 * 119.97618 * 180.23353 * 19 18 17 36 36 H 1.08005 * 119.98185 * 179.97438 * 22 20 19 37 37 H 1.08003 * 120.01975 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5515 -2.6368 0.0009 12 6 6.0613 -4.0793 0.0015 13 6 7.5684 -4.0794 0.0008 14 8 8.1753 -3.0283 0.0004 15 7 8.2399 -5.2427 0.0006 16 8 9.6559 -5.2427 0.0005 17 6 10.2081 -6.4833 -0.0003 18 6 10.4962 -7.1165 1.2009 19 6 11.0535 -8.3804 1.1981 20 6 11.3346 -9.0113 -0.0020 21 9 11.8849 -10.2452 -0.0027 22 6 11.0529 -8.3791 -1.2012 23 6 10.4912 -7.1172 -1.2023 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6584 -3.1503 -0.8892 28 1 3.6577 -3.1507 0.8908 29 1 5.9148 -2.1230 0.8909 30 1 5.9147 -2.1229 -0.8890 31 1 5.6980 -4.5934 -0.8883 32 1 5.6981 -4.5928 0.8916 33 1 7.7548 -6.0827 0.0005 34 1 10.2809 -6.6230 2.1370 35 1 11.2743 -8.8749 2.1326 36 1 11.2732 -8.8726 -2.1363 37 1 10.2719 -6.6242 -2.1379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898575135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:21 Heat of formation + Delta-G solvation = -60.270307 kcal Electronic energy + Delta-G solvation = -20103.051694 eV Core-core repulsion = 16568.903479 eV Total energy + Delta-G solvation = -3534.148215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.52172 -40.41714 -39.33348 -37.27928 -35.05125 -32.98094 -32.41524 -31.88817 -30.22958 -29.36134 -25.91856 -23.81225 -23.07848 -22.32037 -20.56648 -20.06475 -19.24220 -18.24941 -17.31200 -17.08573 -16.56071 -16.20604 -15.99668 -15.85679 -14.94174 -14.66579 -14.28191 -14.26185 -14.02121 -13.99110 -13.43779 -12.83608 -12.69994 -12.65426 -12.31937 -12.18988 -11.77838 -11.46512 -11.14713 -10.77994 -10.57298 -10.18878 -9.86864 -9.84498 -9.67369 -9.57157 -9.25774 -9.18879 -9.11878 -8.49717 -6.01000 -3.98576 -0.00069 0.52083 1.82511 2.56505 3.00769 3.35527 3.42720 3.48572 3.56901 3.89161 4.07826 4.21577 4.49885 4.55094 4.58138 4.66006 5.09670 5.18528 5.20175 5.21457 5.33853 5.41398 5.44151 5.63998 5.67857 5.96929 6.02609 6.07541 6.35789 6.63943 6.68572 6.79740 6.96202 7.10014 7.36618 7.49349 7.84072 8.14008 8.57402 9.03848 9.62335 11.12399 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.051527 B = 0.002190 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.278768 B =12781.138641 C =13002.501542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.124 4.124 13 C 0.521 3.479 14 O -0.516 6.516 15 N -0.597 5.597 16 O -0.096 6.096 17 C 0.028 3.972 18 C -0.073 4.073 19 C -0.151 4.151 20 C 0.117 3.883 21 F -0.134 7.134 22 C -0.151 4.151 23 C -0.074 4.074 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.407 0.593 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.158 -21.012 0.027 31.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.164 4.164 13 C 0.309 3.691 14 O -0.389 6.389 15 N -0.307 5.307 16 O -0.087 6.087 17 C -0.017 4.017 18 C -0.093 4.093 19 C -0.170 4.170 20 C 0.097 3.903 21 F -0.112 7.112 22 C -0.170 4.170 23 C -0.094 4.094 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.247 0.753 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 23.602 -19.920 0.030 30.885 hybrid contribution 0.441 -0.012 -0.026 0.442 sum 24.043 -19.932 0.004 31.231 Atomic orbital electron populations 1.69922 1.06307 1.26832 1.51415 1.25051 0.94747 0.99251 0.94611 0.86772 0.80434 0.83532 0.78551 1.20312 1.21469 1.18875 1.21172 0.89629 0.94378 1.50584 0.91091 1.19583 0.96937 0.92406 0.96415 1.21483 0.91320 1.00094 1.01089 1.21545 0.97398 0.92252 1.03349 1.21785 0.87251 1.02471 1.04884 1.21420 0.90077 0.82128 0.75472 1.90775 1.69424 1.30825 1.47883 1.48417 0.92887 1.10042 1.79331 1.89274 1.03288 1.20186 1.95989 1.19018 1.01446 0.88494 0.92743 1.21520 0.95773 0.93257 0.98788 1.21131 1.02350 0.95802 0.97696 1.17862 0.96761 0.81000 0.94656 1.91542 1.82672 1.39577 1.97416 1.21128 1.02306 0.95835 0.97708 1.21523 0.95761 0.93287 0.98781 0.92814 0.96544 0.96988 0.92714 0.92682 0.91459 0.91457 0.88347 0.88336 0.75264 0.83743 0.83730 0.83733 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -1.92 5.15 -26.73 -0.14 -2.06 16 11 C -0.11 -1.71 4.50 -26.73 -0.12 -1.83 16 12 C -0.12 -1.41 5.69 -27.89 -0.16 -1.56 16 13 C 0.52 6.89 7.96 -11.19 -0.09 6.80 16 14 O -0.52 -9.43 16.39 -12.85 -0.21 -9.64 16 15 N -0.60 -6.07 6.32 31.15 0.20 -5.87 16 16 O -0.10 -1.12 10.98 -13.66 -0.15 -1.27 16 17 C 0.03 0.24 5.81 -39.16 -0.23 0.01 16 18 C -0.07 -0.49 9.99 -39.41 -0.39 -0.89 16 19 C -0.15 -0.88 10.02 -39.54 -0.40 -1.28 16 20 C 0.12 0.77 7.30 -39.42 -0.29 0.48 16 21 F -0.13 -0.99 17.27 2.25 0.04 -0.95 16 22 C -0.15 -0.88 10.02 -39.54 -0.40 -1.28 16 23 C -0.07 -0.49 9.99 -39.41 -0.39 -0.89 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.41 2.62 8.51 -40.82 -0.35 2.27 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 36 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 37 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 329.32 15.07 4.96 4.96 Total: -1.00 -35.42 329.32 -7.13 -42.55 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.92 Total: -3.50 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -3.14 Total: -16.41 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.97 Total: -33.27 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.36 Total: -10.91 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.42 -7.13 -42.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898575135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.722 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds