Wall clock time and date at job start Tue Mar 31 2020 05:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00310 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99527 * 3 2 1 5 5 H 1.48494 * 109.47191 * 29.99477 * 3 2 1 6 6 H 1.48501 * 109.46989 * 150.00083 * 3 2 1 7 7 C 1.37884 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47348 * 179.97438 * 10 9 7 12 12 C 1.52989 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47090 * 179.97438 * 12 11 10 14 14 O 1.21373 * 119.99905 * 0.02562 * 13 12 11 15 15 N 1.34319 * 119.99866 * 180.02562 * 13 12 11 16 16 O 1.41605 * 119.99734 * 180.02562 * 15 13 12 17 17 C 1.35794 * 113.99777 * 180.02562 * 16 15 13 18 18 C 1.38805 * 120.04117 * 269.71945 * 17 16 15 19 19 C 1.38133 * 119.95672 * 179.77319 * 18 17 16 20 20 C 1.38462 * 120.03963 * 0.50698 * 19 18 17 21 21 F 1.35102 * 119.95453 * 179.72394 * 20 19 18 22 22 C 1.38460 * 120.08449 * 359.74822 * 20 19 18 23 23 C 1.38127 * 120.03968 * 0.02562 * 22 20 19 24 24 H 0.97000 * 119.99148 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47662 * 60.00116 * 9 7 2 26 26 H 1.09004 * 109.47237 * 299.99957 * 9 7 2 27 27 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 28 28 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 29 29 H 1.09000 * 109.46866 * 59.99785 * 11 10 9 30 30 H 1.08993 * 109.46765 * 300.00186 * 11 10 9 31 31 H 1.09000 * 109.47099 * 60.00324 * 12 11 10 32 32 H 1.08993 * 109.47772 * 299.99965 * 12 11 10 33 33 H 0.96999 * 120.00326 * 0.02562 * 15 13 12 34 34 H 1.07997 * 120.02172 * 0.02562 * 18 17 16 35 35 H 1.08008 * 119.97618 * 180.23353 * 19 18 17 36 36 H 1.08005 * 119.98185 * 179.97438 * 22 20 19 37 37 H 1.08003 * 120.01975 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5515 -2.6368 0.0009 12 6 6.0613 -4.0793 0.0015 13 6 7.5684 -4.0794 0.0008 14 8 8.1753 -3.0283 0.0004 15 7 8.2399 -5.2427 0.0006 16 8 9.6559 -5.2427 0.0005 17 6 10.2081 -6.4833 -0.0003 18 6 10.4962 -7.1165 1.2009 19 6 11.0535 -8.3804 1.1981 20 6 11.3346 -9.0113 -0.0020 21 9 11.8849 -10.2452 -0.0027 22 6 11.0529 -8.3791 -1.2012 23 6 10.4912 -7.1172 -1.2023 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6584 -3.1503 -0.8892 28 1 3.6577 -3.1507 0.8908 29 1 5.9148 -2.1230 0.8909 30 1 5.9147 -2.1229 -0.8890 31 1 5.6980 -4.5934 -0.8883 32 1 5.6981 -4.5928 0.8916 33 1 7.7548 -6.0827 0.0005 34 1 10.2809 -6.6230 2.1370 35 1 11.2743 -8.8749 2.1326 36 1 11.2732 -8.8726 -2.1363 37 1 10.2719 -6.6242 -2.1379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898575135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:20 Heat of formation + Delta-G solvation = -82.005377 kcal Electronic energy + Delta-G solvation = -20103.994197 eV Core-core repulsion = 16568.903479 eV Total energy + Delta-G solvation = -3535.090718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.05175 -41.14611 -40.21353 -38.02921 -36.60887 -34.61196 -33.73730 -32.36165 -31.69478 -30.11896 -27.53308 -24.28922 -24.10228 -23.44863 -21.84278 -21.48585 -19.95184 -18.83507 -18.76102 -18.00150 -17.88222 -16.90550 -16.81697 -16.66629 -16.29575 -15.71370 -15.49590 -15.11148 -14.95786 -14.68891 -14.67862 -14.00692 -13.95596 -13.72971 -13.49819 -13.29959 -13.21393 -12.83521 -12.32843 -12.06286 -12.01598 -11.73816 -11.50956 -11.31132 -11.23857 -11.10232 -10.73718 -10.31014 -10.13277 -9.79759 -8.27639 -6.30159 -0.59088 0.05969 1.11733 1.36507 1.38117 1.50711 1.57881 2.37666 2.45870 3.07774 3.08013 3.27096 3.62899 3.65219 3.77475 4.00322 4.10151 4.17688 4.18398 4.59050 4.66199 4.67448 4.78530 4.79163 4.86639 4.94436 4.95425 5.16547 5.18784 5.23346 5.31532 5.48939 5.64424 5.69618 5.71507 5.94114 6.30741 6.32939 6.78188 7.25037 7.34590 8.88772 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.051527 B = 0.002190 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.278768 B =12781.138641 C =13002.501542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.528 4.528 8 H 0.039 0.961 9 C -0.019 4.019 10 C -0.093 4.093 11 C -0.100 4.100 12 C -0.114 4.114 13 C 0.523 3.477 14 O -0.576 6.576 15 N -0.580 5.580 16 O -0.122 6.122 17 C 0.007 3.993 18 C -0.073 4.073 19 C -0.146 4.146 20 C 0.110 3.890 21 F -0.139 7.139 22 C -0.146 4.146 23 C -0.073 4.073 24 H 0.265 0.735 25 H 0.014 0.986 26 H 0.013 0.987 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.426 0.574 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.785 -22.308 0.001 33.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.566 4.566 8 H 0.057 0.943 9 C -0.057 4.057 10 C -0.131 4.131 11 C -0.138 4.138 12 C -0.154 4.154 13 C 0.312 3.688 14 O -0.454 6.454 15 N -0.290 5.290 16 O -0.113 6.113 17 C -0.038 4.038 18 C -0.093 4.093 19 C -0.165 4.165 20 C 0.090 3.910 21 F -0.117 7.117 22 C -0.165 4.165 23 C -0.093 4.093 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.270 0.730 34 H 0.170 0.830 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 25.237 -21.290 0.004 33.017 hybrid contribution -0.059 0.226 -0.018 0.234 sum 25.178 -21.063 -0.014 32.827 Atomic orbital electron populations 1.70062 1.08092 1.27997 1.53014 1.25996 0.95616 1.03380 0.94443 0.85710 0.79409 0.78732 0.79124 1.19304 1.20903 1.17565 1.21554 0.92138 0.93192 1.49698 0.94280 1.19599 0.93851 0.96087 0.96141 1.21334 0.93323 0.96672 1.01735 1.21331 0.95018 0.95338 1.02148 1.21691 0.86034 0.99807 1.07819 1.21631 0.90695 0.81902 0.74549 1.90755 1.70676 1.32991 1.50977 1.48175 0.93129 1.10179 1.77468 1.89277 1.03540 1.22361 1.96164 1.19242 1.02489 0.88082 0.93951 1.21586 0.95639 0.93467 0.98600 1.21315 1.01445 0.95322 0.98399 1.18059 0.96787 0.80881 0.95242 1.91534 1.82783 1.39935 1.97463 1.21312 1.01402 0.95356 0.98413 1.21588 0.95627 0.93492 0.98591 0.92593 0.96794 0.96900 0.92050 0.92068 0.92814 0.92732 0.85342 0.85354 0.73039 0.83043 0.81809 0.81812 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.95 45.70 27.47 68.60 1.88 47.58 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 7 C -0.53 -30.59 9.66 25.60 0.25 -30.35 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 9 C -0.02 -0.92 4.04 29.85 0.12 -0.80 16 10 C -0.09 -3.37 5.15 30.60 0.16 -3.21 16 11 C -0.10 -3.04 4.50 30.59 0.14 -2.90 16 12 C -0.11 -2.28 5.69 29.85 0.17 -2.11 16 13 C 0.52 13.08 7.96 87.73 0.70 13.78 16 14 O -0.58 -21.02 16.39 14.21 0.23 -20.79 16 15 N -0.58 -10.76 6.32 -173.97 -1.10 -11.86 16 16 O -0.12 -2.72 10.98 36.47 0.40 -2.32 16 17 C 0.01 0.11 5.81 22.54 0.13 0.24 16 18 C -0.07 -0.85 9.99 22.38 0.22 -0.63 16 19 C -0.15 -1.39 10.02 22.30 0.22 -1.17 16 20 C 0.11 1.21 7.30 22.38 0.16 1.38 16 21 F -0.14 -1.78 17.27 44.97 0.78 -1.00 16 22 C -0.15 -1.39 10.02 22.30 0.22 -1.17 16 23 C -0.07 -0.85 9.99 22.38 0.22 -0.63 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 26 H 0.01 0.60 7.57 -2.38 -0.02 0.58 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.43 4.37 8.51 -92.71 -0.79 3.58 16 34 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 35 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 36 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -78.25 329.32 5.91 -72.34 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 0.24 Total: 2.88 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.18 Total: -26.97 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -0.80 Total: -71.72 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.63 Total: -23.12 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.78 Total: -1.00 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.58 kcal Total: -78.25 5.91 -72.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898575135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.666 kcal (2) G-P(sol) polarization free energy of solvation -78.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds