Wall clock time and date at job start Tue Mar 31 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38668 * 120.78873 * 2 1 4 4 C 1.38184 * 119.16274 * 179.97438 * 3 2 1 5 5 C 1.50693 * 119.61836 * 179.97438 * 4 3 2 6 6 N 1.31890 * 120.76377 * 359.74648 * 4 3 2 7 7 C 1.31857 * 121.72294 * 0.51853 * 6 4 3 8 8 C 1.50699 * 119.61639 * 179.75704 * 7 6 4 9 9 S 1.81399 * 109.47054 * 269.72889 * 8 7 6 10 10 O 1.42103 * 109.47296 * 63.60838 * 9 8 7 11 11 C 1.81398 * 103.00088 * 179.97438 * 9 8 7 12 12 C 1.53006 * 109.47199 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47006 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.46980 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00349 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00086 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00230 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99868 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47574 * 89.99731 * 18 16 14 20 20 H 1.48504 * 109.47001 * 209.99908 * 18 16 14 21 21 H 1.48502 * 109.47145 * 329.99465 * 18 16 14 22 22 C 1.38225 * 120.76316 * 359.48226 * 7 6 4 23 23 H 1.09002 * 109.47286 * 270.02342 * 1 2 3 24 24 H 1.09000 * 109.47360 * 30.02178 * 1 2 3 25 25 H 1.08997 * 109.47404 * 150.02207 * 1 2 3 26 26 H 1.08005 * 120.41934 * 359.95298 * 3 2 1 27 27 H 1.09007 * 109.47142 * 89.99960 * 5 4 3 28 28 H 1.08999 * 109.47455 * 209.99749 * 5 4 3 29 29 H 1.08997 * 109.47582 * 330.00589 * 5 4 3 30 30 H 1.09000 * 109.47247 * 149.72917 * 8 7 6 31 31 H 1.09001 * 109.47358 * 29.72344 * 8 7 6 32 32 H 1.09002 * 109.46881 * 299.99990 * 11 9 8 33 33 H 1.09000 * 109.46946 * 60.00038 * 11 9 8 34 34 H 1.08998 * 109.46864 * 299.99844 * 12 11 9 35 35 H 1.09000 * 109.46988 * 60.00250 * 12 11 9 36 36 H 1.09002 * 109.47076 * 300.00177 * 13 12 11 37 37 H 1.09000 * 109.46945 * 60.00344 * 13 12 11 38 38 H 0.97002 * 120.00071 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.41957 * 180.27620 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 0.0005 5 6 4.3797 2.4404 0.0000 6 7 4.2403 0.0001 0.0061 7 6 3.5983 -1.1516 0.0011 8 6 4.3800 -2.4400 0.0022 9 16 4.6943 -2.9581 -1.7076 10 8 5.5113 -1.9909 -2.3530 11 6 5.6298 -4.4985 -1.5018 12 6 5.9771 -5.0719 -2.8772 13 6 6.7667 -6.3709 -2.7036 14 6 7.1093 -6.9353 -4.0582 15 1 6.7956 -6.4190 -4.9534 16 6 7.8241 -8.1103 -4.1548 17 7 8.1227 -8.6032 -5.3369 18 14 8.3673 -9.0030 -2.6064 19 1 7.3151 -9.9672 -2.1959 20 1 9.6316 -9.7344 -2.8745 21 1 8.5871 -8.0171 -1.5179 22 6 2.2166 -1.1909 0.0006 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6966 2.1378 -0.0008 27 1 4.5678 2.7518 1.0275 28 1 5.3293 2.2891 -0.5134 29 1 3.8075 3.2124 -0.5145 30 1 3.8073 -3.2120 0.5163 31 1 5.3292 -2.2887 0.5163 32 1 6.5477 -4.2952 -0.9502 33 1 5.0263 -5.2192 -0.9500 34 1 5.0590 -5.2753 -3.4283 35 1 6.5805 -4.3514 -3.4294 36 1 7.6848 -6.1671 -2.1525 37 1 6.1637 -7.0915 -2.1512 38 1 8.6259 -9.4297 -5.4048 39 1 1.6964 -2.1374 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899440107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:28 Heat of formation + Delta-G solvation = -28.270751 kcal Electronic energy + Delta-G solvation = -18711.669294 eV Core-core repulsion = 15745.121860 eV Total energy + Delta-G solvation = -2966.547434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57128 -35.47657 -34.55742 -34.40639 -33.93349 -32.07068 -29.39427 -28.12665 -27.96443 -27.05209 -23.35571 -22.07298 -21.20411 -20.15295 -17.41763 -16.90404 -16.68004 -16.29027 -15.58557 -15.29865 -14.93698 -14.61903 -14.21870 -13.93599 -13.64002 -13.59099 -13.30125 -13.03175 -12.85032 -12.71151 -12.38457 -12.37321 -12.12474 -12.05799 -11.71642 -11.55906 -11.14796 -10.83408 -10.55649 -9.95504 -9.81222 -9.73856 -9.59271 -9.52560 -9.19701 -8.85011 -8.53591 -8.02488 -6.03711 -4.01888 0.77557 1.03177 1.73653 2.76618 3.29914 3.37788 3.41602 3.57336 3.88485 3.98981 4.34230 4.37323 4.45291 4.82235 4.84372 5.01957 5.12014 5.13960 5.17898 5.29392 5.32154 5.36273 5.38299 5.44383 5.48539 5.51342 5.71138 5.83594 5.93525 6.05469 6.07622 6.38496 6.51414 6.52837 6.84724 7.26444 7.39872 7.78920 7.88614 8.54266 9.01522 9.58496 11.09809 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035195 B = 0.002949 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.378177 B = 9493.391686 C = 9718.078144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 C -0.183 4.183 4 C 0.137 3.863 5 C -0.105 4.105 6 N -0.483 5.483 7 C 0.164 3.836 8 C -0.412 4.412 9 S 1.243 4.757 10 O -0.830 6.830 11 C -0.441 4.441 12 C -0.085 4.085 13 C -0.008 4.008 14 C -0.523 4.523 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.179 4.179 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.014 0.986 37 H 0.015 0.985 38 H 0.263 0.737 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.379 17.696 14.528 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.045 4.045 3 C -0.203 4.203 4 C -0.001 4.001 5 C -0.163 4.163 6 N -0.194 5.194 7 C 0.025 3.975 8 C -0.546 4.546 9 S 1.441 4.559 10 O -0.825 6.825 11 C -0.579 4.579 12 C -0.124 4.124 13 C -0.047 4.047 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.200 4.200 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.151 0.849 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.634 18.033 13.630 28.669 hybrid contribution 1.482 -0.369 1.986 2.506 sum -16.152 17.664 15.617 28.579 Atomic orbital electron populations 1.20831 0.90005 1.03562 1.02859 1.20312 0.96786 0.92782 0.94588 1.21821 0.94690 0.98775 1.05024 1.21266 0.91225 0.93822 0.93778 1.20730 1.00598 0.91981 1.02962 1.67321 1.41358 0.97721 1.13031 1.20268 0.90604 0.92070 0.94539 1.26821 1.05475 0.99061 1.23209 1.70768 1.12984 0.87551 0.84604 1.93152 1.71479 1.55946 1.61963 1.27751 1.10130 1.14130 1.05926 1.21129 1.00958 0.99113 0.91227 1.19568 0.94969 0.92280 0.97868 1.21170 1.34995 1.07712 0.92184 0.90885 1.25035 0.95480 0.97128 0.95884 1.69915 1.40094 1.21220 1.22993 0.86771 0.78300 0.79975 0.84191 1.20187 1.21392 1.19140 1.21839 0.94212 0.99222 1.04722 0.90559 0.91033 0.90607 0.84923 0.90485 0.90261 0.90652 0.85064 0.87746 0.89935 0.86780 0.91524 0.92205 0.96771 0.96710 0.92727 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.06 36.01 0.36 -0.24 16 2 C -0.04 -0.32 5.92 -104.32 -0.62 -0.94 16 3 C -0.18 -1.71 9.45 -39.44 -0.37 -2.08 16 4 C 0.14 1.62 6.78 -82.59 -0.56 1.06 16 5 C -0.11 -0.96 10.17 36.00 0.37 -0.59 16 6 N -0.48 -7.08 10.19 -5.74 -0.06 -7.13 16 7 C 0.16 2.04 6.04 -82.59 -0.50 1.54 16 8 C -0.41 -4.60 6.21 36.01 0.22 -4.37 16 9 S 1.24 16.38 13.14 -107.50 -1.41 14.96 16 10 O -0.83 -16.74 18.14 -35.23 -0.64 -17.38 16 11 C -0.44 -6.63 5.92 37.16 0.22 -6.41 16 12 C -0.09 -1.70 5.16 -26.73 -0.14 -1.83 16 13 C -0.01 -0.20 4.04 -27.89 -0.11 -0.31 16 14 C -0.52 -15.16 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 18 Si 0.88 21.92 27.47 -169.99 -4.67 17.26 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 22 C -0.18 -1.68 9.45 -39.44 -0.37 -2.05 16 23 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 25 H 0.08 0.32 8.10 -51.93 -0.42 -0.11 16 26 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 27 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.13 0.92 8.08 -51.92 -0.42 0.50 16 31 H 0.10 1.33 8.14 -51.92 -0.42 0.91 16 32 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 33 H 0.11 1.34 8.14 -51.92 -0.42 0.91 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 342.66 15.07 5.16 5.16 Total: -1.00 -39.27 342.66 -9.03 -48.30 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.26 Total: -3.86 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -1.93 Total: -29.86 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.72 Total: -34.58 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.64 Total: -17.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 16 Polarization: 16.38 SS G_CDS: -1.41 Total: 14.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -39.27 -9.03 -48.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899440107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.029 kcal (2) G-P(sol) polarization free energy of solvation -39.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds