Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38675 * 120.78958 * 2 1 4 4 C 1.38184 * 119.16617 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.61840 * 179.97438 * 4 3 2 6 6 N 1.31882 * 120.76266 * 359.97438 * 4 3 2 7 7 C 1.31860 * 121.72556 * 359.77465 * 6 4 3 8 8 C 1.50704 * 119.61603 * 180.24215 * 7 6 4 9 9 S 1.81401 * 109.46974 * 270.24116 * 8 7 6 10 10 O 1.42098 * 109.47083 * 296.39011 * 9 8 7 11 11 C 1.81403 * 102.99768 * 180.02562 * 9 8 7 12 12 C 1.53004 * 109.47023 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47124 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47516 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99385 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00618 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99803 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47199 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47552 * 119.99683 * 18 16 14 21 21 H 1.48502 * 109.46919 * 239.99841 * 18 16 14 22 22 C 1.38221 * 120.76509 * 0.49011 * 7 6 4 23 23 H 1.09001 * 109.46878 * 270.02215 * 1 2 3 24 24 H 1.08998 * 109.47152 * 30.02687 * 1 2 3 25 25 H 1.09000 * 109.46643 * 150.02365 * 1 2 3 26 26 H 1.08005 * 120.41402 * 359.95491 * 3 2 1 27 27 H 1.09004 * 109.47331 * 89.99918 * 5 4 3 28 28 H 1.09002 * 109.47262 * 210.00452 * 5 4 3 29 29 H 1.09007 * 109.47332 * 330.00356 * 5 4 3 30 30 H 1.08999 * 109.47350 * 30.24215 * 8 7 6 31 31 H 1.09000 * 109.46998 * 150.24043 * 8 7 6 32 32 H 1.09000 * 109.47091 * 300.00123 * 11 9 8 33 33 H 1.08995 * 109.47069 * 60.00172 * 11 9 8 34 34 H 1.09000 * 109.47021 * 299.99840 * 12 11 9 35 35 H 1.08995 * 109.47323 * 60.00002 * 12 11 9 36 36 H 1.09000 * 109.46925 * 299.99757 * 13 12 11 37 37 H 1.09000 * 109.47102 * 59.99266 * 13 12 11 38 38 H 0.97001 * 119.99900 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.42313 * 179.78058 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1521 0.0005 5 6 4.3797 2.4405 0.0000 6 7 4.2403 0.0002 0.0016 7 6 3.5983 -1.1515 0.0065 8 6 4.3801 -2.4399 0.0130 9 16 4.7010 -2.9610 -1.6947 10 8 3.4684 -3.2402 -2.3442 11 6 5.6345 -4.5019 -1.4824 12 6 5.9881 -5.0772 -2.8554 13 6 6.7748 -6.3771 -2.6765 14 6 7.1225 -6.9441 -4.0287 15 1 6.8128 -6.4290 -4.9261 16 6 7.8349 -8.1209 -4.1204 17 7 8.2116 -8.7484 -3.0276 18 14 8.2665 -8.8234 -5.7966 19 1 7.7317 -7.9339 -6.8587 20 1 9.7425 -8.9197 -5.9279 21 1 7.6678 -10.1752 -5.9358 22 6 2.2167 -1.1909 0.0007 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6966 2.1378 -0.0007 27 1 4.5678 2.7519 1.0275 28 1 5.3293 2.2893 -0.5135 29 1 3.8074 3.2125 -0.5146 30 1 5.3273 -2.2876 0.5305 31 1 3.8056 -3.2109 0.5263 32 1 6.5503 -4.2984 -0.9274 33 1 5.0282 -5.2211 -0.9319 34 1 5.0725 -5.2806 -3.4108 35 1 6.5945 -4.3578 -3.4056 36 1 7.6904 -6.1740 -2.1209 37 1 6.1680 -7.0963 -2.1263 38 1 8.7132 -9.5762 -3.0922 39 1 1.6965 -2.1374 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899440108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = -32.456328 kcal Electronic energy + Delta-G solvation = -18665.797613 eV Core-core repulsion = 15699.068679 eV Total energy + Delta-G solvation = -2966.728934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55088 -35.47715 -34.43018 -34.37818 -33.90722 -32.01134 -29.36980 -27.99056 -27.54928 -26.97154 -23.50026 -22.12946 -21.16682 -20.21213 -17.36196 -16.89239 -16.32554 -16.24559 -15.49727 -15.31629 -14.78193 -14.60977 -14.31947 -14.02804 -13.60430 -13.53109 -13.29002 -12.97668 -12.78847 -12.44772 -12.38961 -12.32984 -12.01280 -11.88811 -11.66633 -11.37631 -10.87462 -10.78633 -10.65633 -10.25041 -9.78390 -9.66399 -9.63938 -9.39823 -9.11729 -8.77964 -8.35278 -7.93311 -6.00026 -4.02488 0.79628 1.05531 1.76967 2.82773 3.32055 3.39411 3.44356 3.58283 3.80464 4.12278 4.35663 4.38282 4.46977 4.85062 4.90530 5.02077 5.13666 5.19807 5.22437 5.34847 5.35790 5.36109 5.47615 5.48973 5.54942 5.62605 5.75533 5.83722 5.96384 6.11433 6.21401 6.52484 6.54725 6.71517 7.05631 7.66901 7.79262 7.84062 7.99666 8.41580 9.04738 9.61805 11.11321 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.002811 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.571880 B = 9957.499274 C =10210.338037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.036 4.036 3 C -0.182 4.182 4 C 0.133 3.867 5 C -0.103 4.103 6 N -0.482 5.482 7 C 0.164 3.836 8 C -0.407 4.407 9 S 1.241 4.759 10 O -0.843 6.843 11 C -0.433 4.433 12 C -0.093 4.093 13 C 0.026 3.974 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.171 4.171 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 22.880 9.189 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.004 4.004 5 C -0.160 4.160 6 N -0.193 5.193 7 C 0.026 3.974 8 C -0.541 4.541 9 S 1.440 4.560 10 O -0.838 6.838 11 C -0.572 4.572 12 C -0.132 4.132 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.192 4.192 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.151 0.849 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.154 0.846 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.394 23.183 8.428 26.395 hybrid contribution -1.823 -2.255 0.454 2.934 sum -11.217 20.928 8.882 25.351 Atomic orbital electron populations 1.20836 0.90207 1.03532 1.02794 1.20307 0.96806 0.92759 0.94513 1.21809 0.94862 0.98526 1.05012 1.21259 0.91159 0.93864 0.94164 1.20715 1.00470 0.91789 1.03062 1.67281 1.40903 0.97333 1.13824 1.20210 0.90391 0.92186 0.94644 1.26743 1.06520 0.98004 1.22805 1.71039 0.98666 1.01695 0.84587 1.93085 1.44546 1.84160 1.62057 1.27684 1.09467 1.13942 1.06129 1.21316 1.00671 1.00158 0.91078 1.19102 0.94754 0.90190 0.97147 1.21318 1.34525 1.07334 0.92782 0.92472 1.25032 0.95942 0.96943 0.96606 1.69978 1.38792 1.17527 1.27301 0.86524 0.78082 0.78971 0.84385 1.19644 1.20939 1.21062 1.21859 0.94835 0.99027 1.03520 0.90541 0.90916 0.90851 0.84900 0.90457 0.90031 0.90780 0.84601 0.88157 0.86647 0.90018 0.92833 0.92052 0.96181 0.96737 0.93054 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.06 36.01 0.36 -0.53 16 2 C -0.04 -0.38 5.92 -104.32 -0.62 -1.00 16 3 C -0.18 -1.74 9.45 -39.44 -0.37 -2.11 16 4 C 0.13 1.39 6.78 -82.59 -0.56 0.83 16 5 C -0.10 -0.71 10.17 36.00 0.37 -0.34 16 6 N -0.48 -6.00 10.19 -5.74 -0.06 -6.06 16 7 C 0.16 2.13 6.04 -82.58 -0.50 1.63 16 8 C -0.41 -4.82 6.21 36.01 0.22 -4.59 16 9 S 1.24 17.30 13.14 -107.50 -1.41 15.88 16 10 O -0.84 -16.57 18.14 -35.23 -0.64 -17.21 16 11 C -0.43 -7.01 5.92 37.16 0.22 -6.79 16 12 C -0.09 -1.94 5.16 -26.73 -0.14 -2.08 16 13 C 0.03 0.69 4.97 -27.89 -0.14 0.55 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 18 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.17 -2.17 9.45 -39.44 -0.37 -2.54 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 25 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 26 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.14 1.31 8.14 -51.92 -0.42 0.89 16 31 H 0.10 1.16 8.08 -51.92 -0.42 0.74 16 32 H 0.12 1.58 8.14 -51.92 -0.42 1.15 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -36.57 346.26 -9.41 -45.98 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -6.29 Total: -3.47 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: -1.94 Total: -30.76 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.68 Total: -32.53 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.64 Total: -17.21 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 17.30 SS G_CDS: -1.41 Total: 15.88 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.57 -9.41 -45.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899440108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.523 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds