Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38675 * 120.78958 * 2 1 4 4 C 1.38184 * 119.16617 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.61840 * 179.97438 * 4 3 2 6 6 N 1.31882 * 120.76266 * 359.97438 * 4 3 2 7 7 C 1.31860 * 121.72556 * 359.77465 * 6 4 3 8 8 C 1.50704 * 119.61603 * 180.24215 * 7 6 4 9 9 S 1.81401 * 109.46974 * 270.24116 * 8 7 6 10 10 O 1.42098 * 109.47083 * 296.39011 * 9 8 7 11 11 C 1.81403 * 102.99768 * 180.02562 * 9 8 7 12 12 C 1.53004 * 109.47023 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47124 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47516 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99385 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00618 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99803 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47199 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47552 * 119.99683 * 18 16 14 21 21 H 1.48502 * 109.46919 * 239.99841 * 18 16 14 22 22 C 1.38221 * 120.76509 * 0.49011 * 7 6 4 23 23 H 1.09001 * 109.46878 * 270.02215 * 1 2 3 24 24 H 1.08998 * 109.47152 * 30.02687 * 1 2 3 25 25 H 1.09000 * 109.46643 * 150.02365 * 1 2 3 26 26 H 1.08005 * 120.41402 * 359.95491 * 3 2 1 27 27 H 1.09004 * 109.47331 * 89.99918 * 5 4 3 28 28 H 1.09002 * 109.47262 * 210.00452 * 5 4 3 29 29 H 1.09007 * 109.47332 * 330.00356 * 5 4 3 30 30 H 1.08999 * 109.47350 * 30.24215 * 8 7 6 31 31 H 1.09000 * 109.46998 * 150.24043 * 8 7 6 32 32 H 1.09000 * 109.47091 * 300.00123 * 11 9 8 33 33 H 1.08995 * 109.47069 * 60.00172 * 11 9 8 34 34 H 1.09000 * 109.47021 * 299.99840 * 12 11 9 35 35 H 1.08995 * 109.47323 * 60.00002 * 12 11 9 36 36 H 1.09000 * 109.46925 * 299.99757 * 13 12 11 37 37 H 1.09000 * 109.47102 * 59.99266 * 13 12 11 38 38 H 0.97001 * 119.99900 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.42313 * 179.78058 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1521 0.0005 5 6 4.3797 2.4405 0.0000 6 7 4.2403 0.0002 0.0016 7 6 3.5983 -1.1515 0.0065 8 6 4.3801 -2.4399 0.0130 9 16 4.7010 -2.9610 -1.6947 10 8 3.4684 -3.2402 -2.3442 11 6 5.6345 -4.5019 -1.4824 12 6 5.9881 -5.0772 -2.8554 13 6 6.7748 -6.3771 -2.6765 14 6 7.1225 -6.9441 -4.0287 15 1 6.8128 -6.4290 -4.9261 16 6 7.8349 -8.1209 -4.1204 17 7 8.2116 -8.7484 -3.0276 18 14 8.2665 -8.8234 -5.7966 19 1 7.7317 -7.9339 -6.8587 20 1 9.7425 -8.9197 -5.9279 21 1 7.6678 -10.1752 -5.9358 22 6 2.2167 -1.1909 0.0007 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6966 2.1378 -0.0007 27 1 4.5678 2.7519 1.0275 28 1 5.3293 2.2893 -0.5135 29 1 3.8074 3.2125 -0.5146 30 1 5.3273 -2.2876 0.5305 31 1 3.8056 -3.2109 0.5263 32 1 6.5503 -4.2984 -0.9274 33 1 5.0282 -5.2211 -0.9319 34 1 5.0725 -5.2806 -3.4108 35 1 6.5945 -4.3578 -3.4056 36 1 7.6904 -6.1740 -2.1209 37 1 6.1680 -7.0963 -2.1263 38 1 8.7132 -9.5762 -3.0922 39 1 1.6965 -2.1374 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899440108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = -56.697967 kcal Electronic energy + Delta-G solvation = -18666.848809 eV Core-core repulsion = 15699.068679 eV Total energy + Delta-G solvation = -2967.780131 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35951 -36.88067 -36.32140 -35.14478 -34.70988 -34.03413 -30.19403 -29.41528 -28.65527 -27.79433 -25.41517 -23.08122 -22.14589 -21.75203 -18.74650 -18.31980 -17.70753 -17.06297 -16.78522 -16.44479 -16.30058 -16.14636 -15.41645 -15.12044 -14.72911 -14.35469 -14.15849 -14.14760 -13.86627 -13.76777 -13.51065 -13.28802 -13.14827 -12.92830 -12.90060 -12.73008 -12.49647 -12.46336 -12.40566 -11.87115 -11.61849 -11.31214 -10.98963 -10.57785 -10.47823 -10.40743 -9.81998 -9.14659 -8.22034 -6.33451 -0.12294 0.23418 0.68630 1.39195 1.39678 1.53487 1.66976 2.40124 2.68102 2.79070 3.10915 3.19124 3.53704 3.71178 4.03069 4.05534 4.13247 4.16713 4.22159 4.40675 4.52256 4.61342 4.66095 4.68613 4.72023 4.84032 4.89074 4.90370 5.03005 5.13239 5.17306 5.22309 5.29019 5.34655 5.48825 5.68658 5.78520 5.82427 6.22180 6.83342 6.99470 7.35988 8.89845 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.002811 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.571880 B = 9957.499274 C =10210.338037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.178 4.178 4 C 0.121 3.879 5 C -0.101 4.101 6 N -0.497 5.497 7 C 0.140 3.860 8 C -0.396 4.396 9 S 1.294 4.706 10 O -0.903 6.903 11 C -0.436 4.436 12 C -0.089 4.089 13 C 0.027 3.973 14 C -0.547 4.547 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.281 1.281 22 C -0.199 4.199 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.167 0.833 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.163 0.837 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.009 0.991 37 H -0.018 1.018 38 H 0.264 0.736 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 25.331 9.114 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.198 4.198 4 C -0.017 4.017 5 C -0.158 4.158 6 N -0.209 5.209 7 C 0.003 3.997 8 C -0.533 4.533 9 S 1.495 4.505 10 O -0.899 6.899 11 C -0.574 4.574 12 C -0.127 4.127 13 C -0.011 4.011 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.206 1.206 22 C -0.220 4.220 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.185 0.815 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.181 0.819 31 H 0.120 0.880 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.027 0.973 37 H 0.000 1.000 38 H 0.073 0.927 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.393 25.617 8.327 28.527 hybrid contribution -1.874 -2.887 0.609 3.495 sum -11.268 22.730 8.936 26.897 Atomic orbital electron populations 1.20900 0.88273 1.04131 1.03900 1.20709 0.98383 0.92483 0.93618 1.22214 0.94736 0.99481 1.03352 1.21951 0.92194 0.94430 0.93096 1.20823 1.00265 0.90525 1.04177 1.67313 1.41342 0.97729 1.14535 1.20297 0.90669 0.92675 0.96084 1.26593 1.08129 0.97975 1.20582 1.70369 0.96484 0.98453 0.85196 1.92976 1.47211 1.84194 1.65486 1.27672 1.11290 1.14914 1.03501 1.21120 0.99221 0.98427 0.93951 1.19023 0.94356 0.92071 0.95651 1.21777 1.34786 1.08043 0.93922 0.92201 1.25995 0.95687 0.97304 1.00898 1.70100 1.39435 1.18068 1.29765 0.85387 0.78231 0.78086 0.79299 1.18632 1.19763 1.20644 1.21998 0.95203 0.99686 1.05158 0.89076 0.88922 0.91644 0.81540 0.89172 0.90250 0.88447 0.81873 0.88008 0.83707 0.91346 0.94919 0.89811 0.97283 0.99984 0.92697 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 10.06 71.24 0.72 -0.84 16 2 C -0.04 -0.88 5.92 -19.67 -0.12 -0.99 16 3 C -0.18 -2.94 9.45 22.36 0.21 -2.73 16 4 C 0.12 2.27 6.78 42.54 0.29 2.55 16 5 C -0.10 -1.09 10.17 71.23 0.72 -0.36 16 6 N -0.50 -11.68 10.19 -172.08 -1.75 -13.43 16 7 C 0.14 3.56 6.04 42.55 0.26 3.82 16 8 C -0.40 -9.08 6.21 71.24 0.44 -8.64 16 9 S 1.29 35.82 13.14 -56.49 -0.74 35.08 16 10 O -0.90 -36.36 18.14 -148.98 -2.70 -39.06 16 11 C -0.44 -14.13 5.92 71.98 0.43 -13.71 16 12 C -0.09 -3.75 5.16 30.59 0.16 -3.60 16 13 C 0.03 1.47 4.97 29.84 0.15 1.62 16 14 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 17 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 18 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 19 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 C -0.20 -5.03 9.45 22.36 0.21 -4.82 16 23 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.09 0.87 8.10 -2.39 -0.02 0.85 16 25 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 26 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.60 8.08 -2.38 -0.02 0.58 16 30 H 0.16 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.10 2.33 8.08 -2.39 -0.02 2.31 16 32 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -81.12 346.26 2.29 -78.83 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.01 Total: 7.94 kcal Atomic # 6 Polarization: -63.30 SS G_CDS: 4.16 Total: -59.14 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.47 Total: -70.77 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -2.70 Total: -39.06 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 35.82 SS G_CDS: -0.74 Total: 35.08 kcal Total: -81.12 2.29 -78.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899440108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.134 kcal (2) G-P(sol) polarization free energy of solvation -81.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds