Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99872 * 2 1 4 4 O 1.20822 * 120.00558 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99467 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46788 * 180.02562 * 5 3 2 7 7 C 1.36887 * 119.99947 * 269.99975 * 6 5 3 8 8 H 1.08003 * 120.00025 * 127.66998 * 7 6 5 9 9 C 1.39009 * 120.00086 * 307.66592 * 7 6 5 10 10 N 1.31396 * 119.99963 * 174.06918 * 9 7 6 11 11 Si 1.86795 * 120.00137 * 354.07349 * 9 7 6 12 12 H 1.48496 * 109.47511 * 94.96471 * 11 9 7 13 13 H 1.48503 * 109.47236 * 214.96845 * 11 9 7 14 14 H 1.48504 * 109.46797 * 334.96427 * 11 9 7 15 15 C 1.34769 * 120.00181 * 90.00020 * 6 5 3 16 16 O 1.21723 * 119.99892 * 3.68328 * 15 6 5 17 17 C 1.46643 * 120.00351 * 183.68083 * 15 6 5 18 18 N 1.38163 * 126.85010 * 352.87737 * 17 15 6 19 19 H 0.96994 * 126.47175 * 359.97438 * 18 17 15 20 20 C 1.34543 * 107.04627 * 179.97438 * 18 17 15 21 21 C 1.50701 * 125.40928 * 179.97438 * 20 18 17 22 22 N 1.30868 * 109.17997 * 0.22836 * 20 18 17 23 23 C 1.33302 * 109.69895 * 359.62149 * 22 20 18 24 24 C 1.50702 * 126.11427 * 180.15012 * 23 22 20 25 25 H 1.08998 * 109.46929 * 60.00126 * 1 2 3 26 26 H 1.08993 * 109.47028 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46650 * 300.00027 * 1 2 3 28 28 H 1.08998 * 109.47161 * 60.00439 * 5 3 2 29 29 H 1.08993 * 109.47229 * 300.00035 * 5 3 2 30 30 H 0.96997 * 120.00319 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.47403 * 90.00567 * 21 20 18 32 32 H 1.08995 * 109.47288 * 329.99999 * 21 20 18 33 33 H 1.09013 * 109.46942 * 210.00098 * 21 20 18 34 34 H 1.08997 * 109.47220 * 270.26449 * 24 23 22 35 35 H 1.09001 * 109.46810 * 30.26133 * 24 23 22 36 36 H 1.08996 * 109.47107 * 150.25602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.1763 3.3362 -1.1842 8 1 3.6833 4.2798 -1.3660 9 6 5.0084 2.7886 -2.1537 10 7 5.1045 3.3573 -3.3344 11 14 5.9899 1.2443 -1.7782 12 1 5.2408 0.0537 -2.2540 13 1 7.3027 1.3119 -2.4692 14 1 6.2067 1.1397 -0.3128 15 6 4.1724 3.3256 1.1684 16 8 4.0650 2.7243 2.2213 17 6 4.5094 4.7528 1.1703 18 7 4.7995 5.5370 0.0704 19 1 4.8197 5.2474 -0.8551 20 6 5.0487 6.7783 0.5258 21 6 5.4110 7.9655 -0.3287 22 7 4.9319 6.7896 1.8292 23 6 4.5986 5.5733 2.2610 24 6 4.3670 5.1724 3.6952 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9564 0.7805 -0.8892 29 1 3.9557 0.7808 0.8908 30 1 5.6848 2.9750 -4.0111 31 1 4.5026 8.4869 -0.6303 32 1 5.9461 7.6254 -1.2152 33 1 6.0465 8.6433 0.2416 34 1 5.3070 4.8409 4.1362 35 1 3.9848 6.0267 4.2540 36 1 3.6414 4.3599 3.7327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900770848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -51.551151 kcal Electronic energy + Delta-G solvation = -22889.858246 eV Core-core repulsion = 19376.008084 eV Total energy + Delta-G solvation = -3513.850162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51376 -40.05714 -38.49123 -36.04496 -35.20186 -32.55516 -32.40491 -31.54606 -29.06710 -28.57022 -26.87356 -26.00751 -24.54356 -21.54997 -20.69251 -19.99871 -19.11477 -18.12588 -17.36503 -16.69431 -16.12690 -15.63900 -15.47029 -15.12509 -15.03730 -14.25552 -13.88408 -13.32464 -13.26092 -13.08306 -12.89894 -12.64268 -12.51152 -12.23045 -12.00628 -11.94249 -11.82017 -11.69735 -11.53567 -11.32138 -10.80739 -10.44929 -10.35897 -9.99491 -9.80724 -9.37235 -9.17874 -9.02275 -8.14973 -7.56316 -6.83850 -4.72482 2.10464 2.72354 2.83052 2.98243 3.01906 3.05083 3.48134 3.77141 3.81857 4.12657 4.20519 4.61275 4.88119 5.27997 5.34132 5.36795 5.51611 5.55515 5.70383 5.70593 5.73146 5.80483 5.84910 5.99304 6.15680 6.30176 6.51863 6.59207 6.73788 6.78402 6.99682 7.32697 7.66078 7.73091 8.18240 8.26969 8.52394 8.63347 8.91103 9.25648 10.21480 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.007899 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.491096 B = 3544.034661 C = 4577.576938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.448 3.552 4 O -0.489 6.489 5 C 0.112 3.888 6 N -0.456 5.456 7 C -0.364 4.364 8 H 0.103 0.897 9 C 0.073 3.927 10 N -0.852 5.852 11 Si 0.876 3.124 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.252 1.252 15 C 0.583 3.417 16 O -0.569 6.569 17 C -0.044 4.044 18 N -0.521 5.521 19 H 0.442 0.558 20 C 0.201 3.799 21 C -0.066 4.066 22 N -0.505 5.505 23 C 0.059 3.941 24 C -0.063 4.063 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.283 0.717 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -1.527 2.443 3.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.289 3.711 4 O -0.374 6.374 5 C -0.013 4.013 6 N -0.178 5.178 7 C -0.492 4.492 8 H 0.120 0.880 9 C -0.138 4.138 10 N -0.485 5.485 11 Si 0.702 3.298 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.175 1.175 15 C 0.374 3.626 16 O -0.451 6.451 17 C -0.162 4.162 18 N -0.133 5.133 19 H 0.295 0.705 20 C -0.063 4.063 21 C -0.124 4.124 22 N -0.228 5.228 23 C -0.077 4.077 24 C -0.121 4.121 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.352 -0.867 3.177 3.560 hybrid contribution 0.008 -1.551 -1.360 2.063 sum -1.345 -2.419 1.817 3.311 Atomic orbital electron populations 1.23151 0.77390 1.02928 1.02302 1.86520 1.22774 1.34380 1.84869 1.24722 0.92836 0.81254 0.72330 1.90629 1.66615 1.36271 1.43899 1.21322 0.86710 0.88350 1.04892 1.43115 1.60080 1.08547 1.06108 1.18953 1.29217 1.08191 0.92817 0.87992 1.25626 0.95146 0.98372 0.94681 1.69621 1.35648 1.39909 1.03286 0.86809 0.80198 0.82185 0.80645 1.19056 1.20353 1.17547 1.17131 0.77480 0.84601 0.83384 1.90680 1.55997 1.67015 1.31428 1.20625 1.15229 0.92952 0.87431 1.44657 1.48711 1.07936 1.12024 0.70515 1.23232 1.04051 0.87776 0.91260 1.20149 1.02302 0.92541 0.97424 1.69875 1.21462 1.22970 1.08458 1.20877 1.02614 0.88713 0.95483 1.20081 1.02247 1.01034 0.88716 0.92202 0.88629 0.92252 0.87966 0.86602 0.90601 0.90414 0.90666 0.89610 0.91641 0.92087 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.52 10.57 -39.25 -0.41 -6.93 16 3 C 0.45 9.45 8.02 36.01 0.29 9.74 16 4 O -0.49 -11.70 16.18 -18.75 -0.30 -12.00 16 5 C 0.11 2.38 4.58 -5.19 -0.02 2.35 16 6 N -0.46 -10.77 1.47 -117.59 -0.17 -10.94 16 7 C -0.36 -8.86 7.20 -15.01 -0.11 -8.96 16 8 H 0.10 2.65 6.20 -52.48 -0.33 2.32 16 9 C 0.07 1.73 5.46 -17.45 -0.10 1.64 16 10 N -0.85 -20.93 13.96 55.50 0.77 -20.15 16 11 Si 0.88 18.35 24.84 -169.99 -4.22 14.13 16 12 H -0.26 -5.27 6.97 56.52 0.39 -4.87 16 13 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.25 -5.33 6.91 56.52 0.39 -4.94 16 15 C 0.58 14.04 7.60 -12.87 -0.10 13.94 16 16 O -0.57 -13.94 14.48 5.17 0.07 -13.87 16 17 C -0.04 -1.00 6.77 -82.15 -0.56 -1.55 16 18 N -0.52 -11.01 5.41 -7.01 -0.04 -11.04 16 19 H 0.44 9.52 5.30 -40.82 -0.22 9.31 16 20 C 0.20 3.83 8.12 -155.56 -1.26 2.57 16 21 C -0.07 -0.90 10.51 36.01 0.38 -0.52 16 22 N -0.51 -10.45 11.20 -6.81 -0.08 -10.53 16 23 C 0.06 1.26 7.15 -82.48 -0.59 0.67 16 24 C -0.06 -1.16 9.81 36.01 0.35 -0.81 16 25 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.10 2.08 4.11 -51.93 -0.21 1.87 16 29 H 0.12 2.28 7.37 -51.93 -0.38 1.90 16 30 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.58 6.65 -51.93 -0.35 1.23 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -29.85 307.91 -4.40 -34.25 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.02 Total: 11.82 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: -0.65 Total: 20.63 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.49 Total: -52.67 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.64 Total: -32.80 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.22 Total: 14.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.85 -4.40 -34.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900770848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.298 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds