Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99872 * 2 1 4 4 O 1.20822 * 120.00558 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99467 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46788 * 180.02562 * 5 3 2 7 7 C 1.36887 * 119.99947 * 269.99975 * 6 5 3 8 8 H 1.08003 * 120.00025 * 127.66998 * 7 6 5 9 9 C 1.39009 * 120.00086 * 307.66592 * 7 6 5 10 10 N 1.31396 * 119.99963 * 174.06918 * 9 7 6 11 11 Si 1.86795 * 120.00137 * 354.07349 * 9 7 6 12 12 H 1.48496 * 109.47511 * 94.96471 * 11 9 7 13 13 H 1.48503 * 109.47236 * 214.96845 * 11 9 7 14 14 H 1.48504 * 109.46797 * 334.96427 * 11 9 7 15 15 C 1.34769 * 120.00181 * 90.00020 * 6 5 3 16 16 O 1.21723 * 119.99892 * 3.68328 * 15 6 5 17 17 C 1.46643 * 120.00351 * 183.68083 * 15 6 5 18 18 N 1.38163 * 126.85010 * 352.87737 * 17 15 6 19 19 H 0.96994 * 126.47175 * 359.97438 * 18 17 15 20 20 C 1.34543 * 107.04627 * 179.97438 * 18 17 15 21 21 C 1.50701 * 125.40928 * 179.97438 * 20 18 17 22 22 N 1.30868 * 109.17997 * 0.22836 * 20 18 17 23 23 C 1.33302 * 109.69895 * 359.62149 * 22 20 18 24 24 C 1.50702 * 126.11427 * 180.15012 * 23 22 20 25 25 H 1.08998 * 109.46929 * 60.00126 * 1 2 3 26 26 H 1.08993 * 109.47028 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46650 * 300.00027 * 1 2 3 28 28 H 1.08998 * 109.47161 * 60.00439 * 5 3 2 29 29 H 1.08993 * 109.47229 * 300.00035 * 5 3 2 30 30 H 0.96997 * 120.00319 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.47403 * 90.00567 * 21 20 18 32 32 H 1.08995 * 109.47288 * 329.99999 * 21 20 18 33 33 H 1.09013 * 109.46942 * 210.00098 * 21 20 18 34 34 H 1.08997 * 109.47220 * 270.26449 * 24 23 22 35 35 H 1.09001 * 109.46810 * 30.26133 * 24 23 22 36 36 H 1.08996 * 109.47107 * 150.25602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.1763 3.3362 -1.1842 8 1 3.6833 4.2798 -1.3660 9 6 5.0084 2.7886 -2.1537 10 7 5.1045 3.3573 -3.3344 11 14 5.9899 1.2443 -1.7782 12 1 5.2408 0.0537 -2.2540 13 1 7.3027 1.3119 -2.4692 14 1 6.2067 1.1397 -0.3128 15 6 4.1724 3.3256 1.1684 16 8 4.0650 2.7243 2.2213 17 6 4.5094 4.7528 1.1703 18 7 4.7995 5.5370 0.0704 19 1 4.8197 5.2474 -0.8551 20 6 5.0487 6.7783 0.5258 21 6 5.4110 7.9655 -0.3287 22 7 4.9319 6.7896 1.8292 23 6 4.5986 5.5733 2.2610 24 6 4.3670 5.1724 3.6952 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9564 0.7805 -0.8892 29 1 3.9557 0.7808 0.8908 30 1 5.6848 2.9750 -4.0111 31 1 4.5026 8.4869 -0.6303 32 1 5.9461 7.6254 -1.2152 33 1 6.0465 8.6433 0.2416 34 1 5.3070 4.8409 4.1362 35 1 3.9848 6.0267 4.2540 36 1 3.6414 4.3599 3.7327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900770848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -70.607023 kcal Electronic energy + Delta-G solvation = -22890.684570 eV Core-core repulsion = 19376.008084 eV Total energy + Delta-G solvation = -3514.676487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.12393 -41.67674 -40.21104 -37.66093 -36.96855 -34.24452 -34.11494 -33.05239 -30.61048 -29.95098 -28.21119 -27.71139 -26.20589 -23.15735 -22.26843 -21.63627 -20.85312 -19.77916 -18.99637 -18.35059 -17.68154 -17.25847 -17.09616 -16.82590 -16.62946 -15.98196 -15.49733 -14.82096 -14.77149 -14.61771 -14.43475 -14.19183 -13.94878 -13.78146 -13.54147 -13.23265 -13.16026 -13.13152 -13.00700 -12.91211 -12.49669 -12.05613 -11.85045 -11.70347 -11.51882 -11.09715 -10.81119 -10.75052 -9.96186 -9.19495 -8.66231 -6.59370 0.42706 1.07510 1.17485 1.30923 1.39178 1.50877 1.90855 2.06068 2.20132 2.36712 2.52223 2.83091 3.45304 3.80513 3.87855 4.01320 4.13564 4.24862 4.28133 4.28781 4.32720 4.63017 4.64134 4.75624 4.86367 4.97062 5.02539 5.12871 5.17963 5.24046 5.28541 5.74116 5.78869 5.89232 6.57106 6.67245 6.70217 6.97380 7.11952 7.44242 8.41497 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.007899 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.491096 B = 3544.034661 C = 4577.576938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.452 3.548 4 O -0.526 6.526 5 C 0.104 3.896 6 N -0.462 5.462 7 C -0.366 4.366 8 H 0.078 0.922 9 C 0.045 3.955 10 N -0.878 5.878 11 Si 0.919 3.081 12 H -0.243 1.243 13 H -0.274 1.274 14 H -0.257 1.257 15 C 0.573 3.427 16 O -0.584 6.584 17 C -0.086 4.086 18 N -0.529 5.529 19 H 0.439 0.561 20 C 0.212 3.788 21 C -0.065 4.065 22 N -0.520 5.520 23 C 0.056 3.944 24 C -0.059 4.059 25 H 0.057 0.943 26 H 0.142 0.858 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.289 0.711 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -2.042 2.473 3.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.294 3.706 4 O -0.414 6.414 5 C -0.020 4.020 6 N -0.184 5.184 7 C -0.494 4.494 8 H 0.095 0.905 9 C -0.164 4.164 10 N -0.512 5.512 11 Si 0.741 3.259 12 H -0.168 1.168 13 H -0.199 1.199 14 H -0.181 1.181 15 C 0.365 3.635 16 O -0.468 6.468 17 C -0.203 4.203 18 N -0.140 5.140 19 H 0.290 0.710 20 C -0.052 4.052 21 C -0.123 4.123 22 N -0.242 5.242 23 C -0.080 4.080 24 C -0.116 4.116 25 H 0.076 0.924 26 H 0.160 0.840 27 H 0.077 0.923 28 H 0.130 0.870 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.079 -1.414 3.200 3.662 hybrid contribution -0.159 -1.334 -1.371 1.919 sum -1.238 -2.747 1.830 3.525 Atomic orbital electron populations 1.23568 0.74806 1.05933 1.02202 1.86491 1.25162 1.32203 1.84004 1.24610 0.92841 0.81643 0.71494 1.90614 1.67345 1.37641 1.45826 1.21457 0.87299 0.87264 1.05981 1.43143 1.60232 1.09362 1.05661 1.18752 1.29441 1.07954 0.93209 0.90526 1.26083 0.95482 1.00579 0.94253 1.69672 1.36377 1.41170 1.03973 0.86152 0.79384 0.80170 0.80161 1.16789 1.19949 1.18067 1.17406 0.77375 0.85269 0.83426 1.90640 1.56916 1.67539 1.31667 1.20727 1.17931 0.93094 0.88577 1.44637 1.49306 1.08586 1.11510 0.70985 1.24310 1.01221 0.88248 0.91469 1.20412 1.03740 0.90845 0.97315 1.69957 1.22573 1.22468 1.09208 1.21411 1.01291 0.88839 0.96446 1.20109 1.02612 1.01421 0.87492 0.92432 0.84039 0.92343 0.86999 0.85225 0.90046 0.88511 0.89350 0.87502 0.90370 0.89959 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.90 16 2 O -0.36 -12.25 10.57 -51.39 -0.54 -12.79 16 3 C 0.45 18.92 8.02 71.24 0.57 19.49 16 4 O -0.53 -25.49 16.18 21.98 0.36 -25.14 16 5 C 0.10 4.37 4.58 85.63 0.39 4.76 16 6 N -0.46 -22.03 1.47 -644.17 -0.94 -22.98 16 7 C -0.37 -18.10 7.20 84.09 0.61 -17.50 16 8 H 0.08 4.14 6.20 -2.91 -0.02 4.12 16 9 C 0.04 2.13 5.46 84.94 0.46 2.59 16 10 N -0.88 -43.16 13.96 21.67 0.30 -42.85 16 11 Si 0.92 36.73 24.84 68.60 1.70 38.43 16 12 H -0.24 -8.87 6.97 99.48 0.69 -8.17 16 13 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.26 -10.45 6.91 99.48 0.69 -9.76 16 15 C 0.57 28.10 7.60 86.44 0.66 28.76 16 16 O -0.58 -28.98 14.48 -4.42 -0.06 -29.05 16 17 C -0.09 -3.99 6.77 40.00 0.27 -3.72 16 18 N -0.53 -22.60 5.41 -176.08 -0.95 -23.56 16 19 H 0.44 19.36 5.30 -92.71 -0.49 18.87 16 20 C 0.21 7.91 8.12 138.18 1.12 9.03 16 21 C -0.06 -1.64 10.51 71.24 0.75 -0.90 16 22 N -0.52 -21.05 11.20 -175.45 -1.97 -23.01 16 23 C 0.06 2.40 7.15 42.00 0.30 2.70 16 24 C -0.06 -2.13 9.81 71.24 0.70 -1.43 16 25 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 26 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.06 1.50 8.13 -2.39 -0.02 1.49 16 28 H 0.11 4.41 4.11 -2.39 -0.01 4.40 16 29 H 0.13 5.01 7.37 -2.39 -0.02 4.99 16 30 H 0.29 13.15 8.31 -92.71 -0.77 12.38 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.07 2.66 6.65 -2.39 -0.02 2.65 16 Total: -1.00 -64.59 307.91 5.53 -59.06 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.61 Total: 36.19 kcal Atomic # 6 Polarization: 38.67 SS G_CDS: 7.03 Total: 45.70 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.56 Total: -112.40 kcal Atomic # 8 Polarization: -66.73 SS G_CDS: -0.25 Total: -66.98 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 1.70 Total: 38.43 kcal Total: -64.59 5.53 -59.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900770848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.548 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds