Wall clock time and date at job start Tue Mar 31 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 113.01036 * 2 1 4 4 C 1.53934 * 113.72991 * 228.36603 * 2 1 3 5 5 N 1.47961 * 86.17879 * 269.36077 * 4 2 1 6 6 C 1.46900 * 111.00226 * 222.42236 * 5 4 2 7 7 C 1.53002 * 109.46946 * 269.36279 * 6 5 4 8 8 H 1.08996 * 109.47320 * 59.99406 * 7 6 5 9 9 O 1.42904 * 109.47009 * 299.99478 * 7 6 5 10 10 C 1.50698 * 109.46990 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00185 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99694 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00386 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00051 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46951 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47369 * 120.00046 * 14 12 10 17 17 H 1.48495 * 109.47183 * 240.00260 * 14 12 10 18 18 C 1.47966 * 90.76333 * 335.31144 * 5 4 2 19 19 H 1.08993 * 113.86005 * 270.35413 * 18 5 4 20 20 C 1.50705 * 113.75520 * 139.00751 * 18 5 4 21 21 C 1.33384 * 125.20012 * 163.44488 * 20 18 5 22 22 C 1.38424 * 114.91912 * 179.74894 * 21 20 18 23 23 C 1.33386 * 114.92331 * 0.42700 * 22 21 20 24 24 S 1.75886 * 125.20294 * 343.41193 * 20 18 5 25 25 H 1.09000 * 109.47019 * 288.36506 * 1 2 3 26 26 H 1.09002 * 109.47178 * 48.36364 * 1 2 3 27 27 H 1.09003 * 109.47314 * 168.36270 * 1 2 3 28 28 H 1.08995 * 109.47548 * 191.63480 * 3 2 1 29 29 H 1.09005 * 109.47390 * 311.63767 * 3 2 1 30 30 H 1.09005 * 109.47325 * 71.63833 * 3 2 1 31 31 H 1.08991 * 113.76241 * 23.67888 * 4 2 1 32 32 H 1.09003 * 113.75444 * 154.93999 * 4 2 1 33 33 H 1.09004 * 109.47035 * 29.35688 * 6 5 4 34 34 H 1.08996 * 109.47596 * 149.35854 * 6 5 4 35 35 H 0.96703 * 114.00108 * 300.00561 * 9 7 6 36 36 H 0.97002 * 120.00334 * 179.97438 * 13 12 10 37 37 H 1.07997 * 122.54195 * 359.97023 * 21 20 18 38 38 H 1.08001 * 122.53888 * 180.26703 * 22 21 20 39 39 H 1.08002 * 125.20849 * 179.86592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4082 0.0000 4 6 2.1495 -0.9362 -1.0532 5 7 2.1249 -1.9752 -0.0001 6 6 3.3702 -2.7544 0.0000 7 6 3.2137 -3.9660 -0.9211 8 1 2.9973 -3.6268 -1.9341 9 8 2.1397 -4.7845 -0.4532 10 6 4.4914 -4.7651 -0.9215 11 1 5.3309 -4.4414 -0.3243 12 6 4.5881 -5.9100 -1.6837 13 7 3.5656 -6.3045 -2.4106 14 14 6.1717 -6.9009 -1.6837 15 1 7.1628 -6.2502 -0.7896 16 1 5.8950 -8.2764 -1.1972 17 1 6.7160 -6.9643 -3.0639 18 6 2.1496 -0.9362 1.0532 19 1 3.1535 -0.6459 1.3626 20 6 1.2376 -1.2293 2.2166 21 6 1.3005 -0.6385 3.4108 22 6 0.3531 -1.0673 4.3244 23 6 -0.4735 -2.0128 3.8750 24 16 -0.0730 -2.4023 2.2071 25 1 -0.3633 0.3238 0.9753 26 1 -0.3633 0.6828 -0.7681 27 1 -0.3634 -1.0066 -0.2073 28 1 3.1965 1.3493 -0.2072 29 1 1.6416 2.0096 -0.7681 30 1 1.9722 1.8692 0.9754 31 1 1.4899 -1.1482 -1.8946 32 1 3.1536 -0.6458 -1.3626 33 1 4.1894 -2.1302 -0.3569 34 1 3.5866 -3.0936 1.0130 35 1 2.2648 -5.1224 0.4442 36 1 3.6338 -7.1098 -2.9471 37 1 2.0328 0.1198 3.6459 38 1 0.2898 -0.6685 5.3260 39 1 -1.2699 -2.4665 4.4462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930495493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:45 Heat of formation + Delta-G solvation = 13.037456 kcal Electronic energy + Delta-G solvation = -20403.969907 eV Core-core repulsion = 17439.213731 eV Total energy + Delta-G solvation = -2964.756176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38907 -37.28797 -35.61861 -32.52592 -32.01964 -30.20058 -28.45988 -27.36806 -25.65541 -25.46068 -23.05563 -22.20589 -20.20769 -18.95778 -18.52619 -16.96048 -16.61479 -15.45711 -15.23650 -14.81644 -14.58189 -14.27576 -13.92208 -13.67424 -13.22343 -12.99776 -12.63561 -12.54032 -12.50087 -12.05842 -11.97325 -11.78373 -11.69342 -11.21200 -10.96478 -10.92555 -10.85652 -10.51544 -10.36310 -10.25345 -10.13047 -9.92578 -9.05292 -8.55810 -8.39984 -8.34048 -8.10211 -7.86438 -5.97786 -4.16335 1.24300 1.96516 2.41741 2.91525 3.27458 3.35745 3.38733 4.24129 4.43780 4.46277 4.82816 5.13028 5.23059 5.26897 5.29600 5.40482 5.56852 5.60132 5.68138 5.73434 5.74112 5.82872 5.95100 6.00132 6.09273 6.16304 6.20438 6.27192 6.31854 6.49160 6.53281 6.55503 6.66662 6.79025 6.93473 7.53587 7.77958 7.90058 8.22711 8.87658 9.49509 9.66186 11.06153 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.005113 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.846095 B = 5474.649700 C = 6094.044701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 C -0.137 4.137 4 C 0.013 3.987 5 N -0.454 5.454 6 C -0.003 4.003 7 C 0.244 3.756 8 H 0.052 0.948 9 O -0.552 6.552 10 C -0.574 4.574 11 H 0.053 0.947 12 C 0.081 3.919 13 N -0.857 5.857 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.093 3.907 19 H 0.087 0.913 20 C -0.140 4.140 21 C -0.158 4.158 22 C -0.137 4.137 23 C -0.250 4.250 24 S 0.176 5.824 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.341 0.659 36 H 0.259 0.741 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.248 13.929 9.082 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.082 4.082 3 C -0.195 4.195 4 C -0.116 4.116 5 N -0.175 5.175 6 C -0.131 4.131 7 C 0.186 3.814 8 H 0.070 0.930 9 O -0.353 6.353 10 C -0.612 4.612 11 H 0.072 0.928 12 C -0.126 4.126 13 N -0.493 5.493 14 Si 0.714 3.286 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.018 4.018 19 H 0.105 0.895 20 C -0.259 4.259 21 C -0.189 4.189 22 C -0.168 4.168 23 C -0.386 4.386 24 S 0.441 5.559 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.183 0.817 36 H 0.069 0.931 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.659 12.387 7.267 16.275 hybrid contribution 2.684 0.755 1.704 3.268 sum -4.975 13.141 8.971 16.671 Atomic orbital electron populations 1.21606 0.92438 1.02729 1.01288 1.22326 0.96812 0.93830 0.95269 1.21767 1.00419 0.95495 1.01773 1.24050 1.00293 0.91324 0.95945 1.68563 1.35599 1.12250 1.01126 1.23617 0.88956 0.98578 1.01980 1.19162 0.86017 0.84361 0.91852 0.93029 1.86570 1.46086 1.69618 1.33023 1.21700 0.99785 1.10442 1.29319 0.92843 1.25014 0.95838 0.97206 0.94498 1.70096 1.29334 1.23090 1.26797 0.86651 0.83861 0.80232 0.77824 1.19805 1.20856 1.20912 1.22015 0.96153 0.93713 0.89900 0.89506 1.24255 1.01809 1.01822 0.98010 1.19938 1.02226 1.03918 0.92793 1.19982 0.96893 0.99294 1.00673 1.25861 1.06369 1.05160 1.01238 1.84853 1.26436 1.38060 1.06521 0.92550 0.92717 0.91046 0.92602 0.92269 0.92490 0.89346 0.91332 0.94452 0.92094 0.81656 0.93084 0.85179 0.85286 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 7.81 37.16 0.29 -1.27 16 2 C -0.08 -1.06 1.35 -153.58 -0.21 -1.27 16 3 C -0.14 -1.46 9.22 37.15 0.34 -1.12 16 4 C 0.01 0.20 7.04 -2.77 -0.02 0.18 16 5 N -0.45 -8.09 5.33 -231.42 -1.23 -9.32 16 6 C 0.00 -0.06 4.40 -3.82 -0.02 -0.08 16 7 C 0.24 6.24 3.08 -27.88 -0.09 6.15 16 8 H 0.05 1.46 8.14 -51.93 -0.42 1.04 16 9 O -0.55 -14.56 12.60 -35.23 -0.44 -15.01 16 10 C -0.57 -15.86 8.76 -34.44 -0.30 -16.16 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 13 N -0.86 -25.62 12.84 55.43 0.71 -24.91 16 14 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.09 1.39 3.23 -67.80 -0.22 1.17 16 19 H 0.09 1.27 7.88 -51.93 -0.41 0.86 16 20 C -0.14 -2.04 4.51 -36.00 -0.16 -2.20 16 21 C -0.16 -2.05 10.05 -41.21 -0.41 -2.47 16 22 C -0.14 -1.66 10.18 -41.21 -0.42 -2.08 16 23 C -0.25 -3.12 11.23 29.04 0.33 -2.80 16 24 S 0.18 2.60 21.70 -107.50 -2.33 0.27 16 25 H 0.06 0.70 7.46 -51.93 -0.39 0.31 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.04 7.34 -51.93 -0.38 0.65 16 28 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 32 H 0.07 1.04 7.30 -51.93 -0.38 0.66 16 33 H 0.04 0.75 7.38 -51.93 -0.38 0.37 16 34 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 35 H 0.34 8.25 9.04 45.56 0.41 8.66 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -30.51 332.89 -9.57 -40.08 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.28 Total: 7.37 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -0.98 Total: -19.78 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: -0.52 Total: -34.24 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.44 Total: -15.01 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.33 Total: 0.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.51 -9.57 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930495493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.115 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds