Wall clock time and date at job start Tue Mar 31 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 113.01036 * 2 1 4 4 C 1.53934 * 113.72991 * 228.36603 * 2 1 3 5 5 N 1.47961 * 86.17879 * 269.36077 * 4 2 1 6 6 C 1.46900 * 111.00226 * 222.42236 * 5 4 2 7 7 C 1.53002 * 109.46946 * 269.36279 * 6 5 4 8 8 H 1.08996 * 109.47320 * 59.99406 * 7 6 5 9 9 O 1.42904 * 109.47009 * 299.99478 * 7 6 5 10 10 C 1.50698 * 109.46990 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00185 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99694 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00386 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00051 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46951 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47369 * 120.00046 * 14 12 10 17 17 H 1.48495 * 109.47183 * 240.00260 * 14 12 10 18 18 C 1.47966 * 90.76333 * 335.31144 * 5 4 2 19 19 H 1.08993 * 113.86005 * 270.35413 * 18 5 4 20 20 C 1.50705 * 113.75520 * 139.00751 * 18 5 4 21 21 C 1.33384 * 125.20012 * 163.44488 * 20 18 5 22 22 C 1.38424 * 114.91912 * 179.74894 * 21 20 18 23 23 C 1.33386 * 114.92331 * 0.42700 * 22 21 20 24 24 S 1.75886 * 125.20294 * 343.41193 * 20 18 5 25 25 H 1.09000 * 109.47019 * 288.36506 * 1 2 3 26 26 H 1.09002 * 109.47178 * 48.36364 * 1 2 3 27 27 H 1.09003 * 109.47314 * 168.36270 * 1 2 3 28 28 H 1.08995 * 109.47548 * 191.63480 * 3 2 1 29 29 H 1.09005 * 109.47390 * 311.63767 * 3 2 1 30 30 H 1.09005 * 109.47325 * 71.63833 * 3 2 1 31 31 H 1.08991 * 113.76241 * 23.67888 * 4 2 1 32 32 H 1.09003 * 113.75444 * 154.93999 * 4 2 1 33 33 H 1.09004 * 109.47035 * 29.35688 * 6 5 4 34 34 H 1.08996 * 109.47596 * 149.35854 * 6 5 4 35 35 H 0.96703 * 114.00108 * 300.00561 * 9 7 6 36 36 H 0.97002 * 120.00334 * 179.97438 * 13 12 10 37 37 H 1.07997 * 122.54195 * 359.97023 * 21 20 18 38 38 H 1.08001 * 122.53888 * 180.26703 * 22 21 20 39 39 H 1.08002 * 125.20849 * 179.86592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4082 0.0000 4 6 2.1495 -0.9362 -1.0532 5 7 2.1249 -1.9752 -0.0001 6 6 3.3702 -2.7544 0.0000 7 6 3.2137 -3.9660 -0.9211 8 1 2.9973 -3.6268 -1.9341 9 8 2.1397 -4.7845 -0.4532 10 6 4.4914 -4.7651 -0.9215 11 1 5.3309 -4.4414 -0.3243 12 6 4.5881 -5.9100 -1.6837 13 7 3.5656 -6.3045 -2.4106 14 14 6.1717 -6.9009 -1.6837 15 1 7.1628 -6.2502 -0.7896 16 1 5.8950 -8.2764 -1.1972 17 1 6.7160 -6.9643 -3.0639 18 6 2.1496 -0.9362 1.0532 19 1 3.1535 -0.6459 1.3626 20 6 1.2376 -1.2293 2.2166 21 6 1.3005 -0.6385 3.4108 22 6 0.3531 -1.0673 4.3244 23 6 -0.4735 -2.0128 3.8750 24 16 -0.0730 -2.4023 2.2071 25 1 -0.3633 0.3238 0.9753 26 1 -0.3633 0.6828 -0.7681 27 1 -0.3634 -1.0066 -0.2073 28 1 3.1965 1.3493 -0.2072 29 1 1.6416 2.0096 -0.7681 30 1 1.9722 1.8692 0.9754 31 1 1.4899 -1.1482 -1.8946 32 1 3.1536 -0.6458 -1.3626 33 1 4.1894 -2.1302 -0.3569 34 1 3.5866 -3.0936 1.0130 35 1 2.2648 -5.1224 0.4442 36 1 3.6338 -7.1098 -2.9471 37 1 2.0328 0.1198 3.6459 38 1 0.2898 -0.6685 5.3260 39 1 -1.2699 -2.4665 4.4462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930495493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:44 Heat of formation + Delta-G solvation = -7.922304 kcal Electronic energy + Delta-G solvation = -20404.878790 eV Core-core repulsion = 17439.213731 eV Total energy + Delta-G solvation = -2965.665059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62113 -38.33329 -37.56277 -34.25947 -33.82380 -31.27782 -30.19319 -28.32083 -27.29877 -26.74545 -24.41931 -23.56290 -21.93936 -19.96520 -19.64223 -18.98644 -17.78865 -16.71363 -16.66307 -16.64416 -16.08741 -15.78034 -15.40819 -15.11816 -14.68975 -14.34090 -14.02057 -13.61086 -13.46670 -13.32480 -13.25882 -12.93319 -12.89367 -12.81450 -12.80128 -12.72465 -12.21724 -12.03931 -11.82199 -11.44867 -11.41756 -11.23744 -11.05629 -10.72077 -10.14979 -9.60693 -9.34204 -9.20085 -8.13628 -6.40319 0.22348 0.91121 1.38075 1.39202 1.39871 1.51327 1.94323 2.37271 3.02467 3.12532 3.34654 3.72761 4.04513 4.15726 4.16736 4.28314 4.33939 4.37100 4.43278 4.57653 4.71255 4.76982 4.80370 4.83381 4.85496 4.98845 5.03802 5.11993 5.15374 5.26028 5.29804 5.40982 5.49651 5.52213 5.61803 5.72171 5.83106 6.04366 6.19639 6.73076 7.33827 7.60061 8.90840 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.005113 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.846095 B = 5474.649700 C = 6094.044701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.065 4.065 3 C -0.131 4.131 4 C 0.004 3.996 5 N -0.474 5.474 6 C 0.019 3.981 7 C 0.246 3.754 8 H 0.013 0.987 9 O -0.567 6.567 10 C -0.588 4.588 11 H 0.057 0.943 12 C 0.026 3.974 13 N -0.900 5.900 14 Si 0.960 3.040 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.278 1.278 18 C 0.096 3.904 19 H 0.093 0.907 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.240 4.240 24 S 0.111 5.889 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.348 0.652 36 H 0.261 0.739 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 15.572 10.955 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.066 4.066 3 C -0.189 4.189 4 C -0.124 4.124 5 N -0.195 5.195 6 C -0.110 4.110 7 C 0.187 3.813 8 H 0.031 0.969 9 O -0.369 6.369 10 C -0.626 4.626 11 H 0.075 0.925 12 C -0.176 4.176 13 N -0.537 5.537 14 Si 0.785 3.215 15 H -0.188 1.188 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.015 4.015 19 H 0.111 0.889 20 C -0.275 4.275 21 C -0.180 4.180 22 C -0.169 4.169 23 C -0.376 4.376 24 S 0.375 5.625 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.192 0.808 36 H 0.070 0.930 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.895 14.049 9.152 18.130 hybrid contribution 2.379 0.271 1.171 2.666 sum -4.516 14.321 10.323 18.222 Atomic orbital electron populations 1.21546 0.92151 1.01705 1.02101 1.22238 0.96884 0.94758 0.92719 1.21736 1.00480 0.93590 1.03074 1.24129 1.00612 0.91763 0.95914 1.68504 1.33816 1.13861 1.03354 1.23168 0.90589 0.97107 1.00133 1.18994 0.84992 0.86043 0.91221 0.96865 1.86516 1.46505 1.70235 1.33654 1.22080 1.00582 1.10840 1.29087 0.92474 1.25897 0.99286 0.98445 0.93973 1.70240 1.31776 1.23771 1.27878 0.85509 0.79558 0.78413 0.78064 1.18753 1.20489 1.20363 1.22064 0.96808 0.92744 0.89838 0.88919 1.24216 1.01993 1.02620 0.98674 1.20272 1.02270 1.03456 0.92007 1.20330 0.96036 0.98730 1.01771 1.26097 1.06929 1.05080 0.99464 1.85098 1.28061 1.39825 1.09511 0.91998 0.91037 0.93501 0.92330 0.90938 0.91115 0.90681 0.90923 0.94132 0.92457 0.80834 0.93017 0.83038 0.82283 0.80468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 7.81 71.98 0.56 -2.32 16 2 C -0.06 -1.62 1.35 -51.54 -0.07 -1.69 16 3 C -0.13 -2.44 9.22 71.98 0.66 -1.78 16 4 C 0.00 0.14 7.04 86.41 0.61 0.75 16 5 N -0.47 -17.18 5.33 -886.09 -4.73 -21.91 16 6 C 0.02 0.79 4.40 86.30 0.38 1.17 16 7 C 0.25 12.99 3.08 29.85 0.09 13.09 16 8 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 9 O -0.57 -31.12 12.60 -148.98 -1.88 -32.99 16 10 C -0.59 -32.99 8.76 25.60 0.22 -32.76 16 11 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 12 C 0.03 1.50 5.40 84.65 0.46 1.96 16 13 N -0.90 -55.08 12.84 21.45 0.28 -54.80 16 14 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 C 0.10 2.77 3.23 44.27 0.14 2.92 16 19 H 0.09 2.55 7.88 -2.39 -0.02 2.53 16 20 C -0.16 -4.37 4.51 24.59 0.11 -4.26 16 21 C -0.15 -3.46 10.05 21.22 0.21 -3.24 16 22 C -0.14 -2.91 10.18 21.22 0.22 -2.69 16 23 C -0.24 -5.52 11.23 66.72 0.75 -4.77 16 24 S 0.11 3.27 21.70 -56.49 -1.23 2.04 16 25 H 0.06 1.45 7.46 -2.39 -0.02 1.43 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.38 7.34 -2.39 -0.02 1.37 16 28 H 0.06 1.07 7.94 -2.39 -0.02 1.05 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 32 H 0.07 2.21 7.30 -2.39 -0.02 2.19 16 33 H 0.04 1.64 7.38 -2.39 -0.02 1.62 16 34 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 35 H 0.35 17.51 9.04 -74.06 -0.67 16.84 16 36 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -66.72 332.89 -0.81 -67.53 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.36 Total: 27.71 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 4.35 Total: -33.63 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -4.45 Total: -76.71 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.88 Total: -32.99 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.23 Total: 2.04 kcal Total: -66.72 -0.81 -67.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930495493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.612 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds