Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00123 * 2 1 4 4 C 1.50706 * 109.46805 * 269.99586 * 3 2 1 5 5 H 1.07997 * 119.99829 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99529 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00526 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99838 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46778 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47386 * 119.99782 * 8 6 4 11 11 H 1.48494 * 109.47430 * 240.00029 * 8 6 4 12 12 C 1.34780 * 120.00347 * 179.97438 * 2 1 3 13 13 O 1.21286 * 120.00220 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99781 * 0.02562 * 12 2 1 15 15 C 1.52995 * 109.46859 * 81.01887 * 14 12 2 16 16 O 1.42906 * 109.46611 * 321.02044 * 14 12 2 17 17 C 1.50701 * 109.46889 * 201.02327 * 14 12 2 18 18 C 1.38242 * 119.97230 * 292.32582 * 17 14 12 19 19 C 1.38200 * 120.01875 * 179.72872 * 18 17 14 20 20 C 1.38452 * 119.97917 * 0.52691 * 19 18 17 21 21 F 1.35099 * 120.02673 * 179.72298 * 20 19 18 22 22 C 1.38465 * 119.94967 * 359.75214 * 20 19 18 23 23 C 1.38203 * 119.97026 * 359.97438 * 22 20 19 24 24 H 1.08994 * 109.47399 * 270.00583 * 1 2 3 25 25 H 1.09006 * 109.46987 * 30.00336 * 1 2 3 26 26 H 1.09001 * 109.46783 * 149.99741 * 1 2 3 27 27 H 1.08996 * 109.46783 * 29.99602 * 3 2 1 28 28 H 1.09003 * 109.47326 * 149.99945 * 3 2 1 29 29 H 0.96991 * 120.00333 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46712 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.47033 * 60.00544 * 15 14 12 32 32 H 1.08993 * 109.47503 * 299.99846 * 15 14 12 33 33 H 0.96695 * 114.00223 * 299.99622 * 16 14 12 34 34 H 1.07995 * 119.98937 * 359.97438 * 18 17 14 35 35 H 1.08010 * 120.01005 * 180.30122 * 19 18 17 36 36 H 1.07996 * 120.01259 * 179.97438 * 22 20 19 37 37 H 1.07994 * 119.98448 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5525 3.6186 -0.6732 8 14 3.4369 3.4174 -3.4340 9 1 2.8590 2.4173 -4.3673 10 1 2.7989 4.7379 -3.6672 11 1 4.8993 3.5261 -3.6677 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 0.9360 -2.8017 -1.4244 16 8 0.2399 -2.3609 0.8476 17 6 2.2827 -3.5703 0.5108 18 6 3.3755 -3.9717 -0.2347 19 6 4.2021 -4.9747 0.2350 20 6 3.9294 -5.5850 1.4475 21 9 4.7337 -6.5694 1.9049 22 6 2.8313 -5.1860 2.1906 23 6 2.0092 -4.1790 1.7216 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 4.0293 4.4444 -0.8505 30 1 0.3914 -3.7459 -1.4244 31 1 1.8098 -2.8866 -2.0704 32 1 0.2871 -2.0075 -1.7934 33 1 0.4502 -2.1529 1.7682 34 1 3.5854 -3.4987 -1.1826 35 1 5.0587 -5.2848 -0.3453 36 1 2.6174 -5.6617 3.1363 37 1 1.1529 -3.8674 2.3012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930593067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = -95.711511 kcal Electronic energy + Delta-G solvation = -22331.781972 eV Core-core repulsion = 18796.096911 eV Total energy + Delta-G solvation = -3535.685061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.91834 -40.47825 -38.38425 -36.53114 -34.87345 -32.57355 -32.18737 -31.00949 -29.18418 -27.73894 -26.00263 -24.25920 -23.08942 -22.92182 -21.11834 -19.12584 -18.17744 -17.30786 -16.57630 -16.37769 -16.15244 -15.59853 -15.34920 -14.74763 -14.61814 -14.45246 -13.82814 -13.62337 -13.40197 -13.13133 -12.95888 -12.46869 -12.36828 -12.20623 -12.11979 -11.97633 -11.76894 -11.46208 -11.22182 -11.00724 -10.90166 -10.63904 -10.42940 -10.18300 -9.64323 -9.12340 -8.84672 -8.51045 -8.46955 -7.68465 -6.07905 -4.12910 1.08362 1.24401 3.18154 3.27302 3.35085 3.38587 3.47214 3.91242 4.10745 4.23716 4.41106 4.57096 4.69041 4.84705 4.97926 5.11841 5.26819 5.28820 5.42561 5.64828 5.73499 5.84675 5.88197 5.95059 6.05359 6.08748 6.11437 6.24666 6.40588 6.47651 6.84585 6.97271 7.36273 7.39167 7.51179 7.88186 8.18792 8.34235 8.82962 8.98670 9.52336 11.00273 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.004584 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.482997 B = 6107.273468 C = 6615.933095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.589 5.589 3 C 0.243 3.757 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.481 3.519 13 O -0.530 6.530 14 C 0.160 3.840 15 C -0.135 4.135 16 O -0.542 6.542 17 C -0.105 4.105 18 C -0.048 4.048 19 C -0.155 4.155 20 C 0.095 3.905 21 F -0.144 7.144 22 C -0.157 4.157 23 C -0.082 4.082 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.378 0.622 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -15.838 3.472 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.320 5.320 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.265 3.735 13 O -0.407 6.407 14 C 0.116 3.884 15 C -0.192 4.192 16 O -0.349 6.349 17 C -0.106 4.106 18 C -0.066 4.066 19 C -0.174 4.174 20 C 0.075 3.925 21 F -0.122 7.122 22 C -0.176 4.176 23 C -0.100 4.100 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.227 0.773 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.921 -15.795 2.980 17.129 hybrid contribution 0.676 0.467 -0.294 0.873 sum -5.244 -15.327 2.686 16.421 Atomic orbital electron populations 1.21833 0.80593 1.02623 1.00840 1.48147 1.06718 1.07327 1.69851 1.19345 0.92535 0.78090 0.97651 1.21441 1.36491 1.06309 0.92199 0.92382 1.24939 0.95342 0.96364 0.97454 1.69937 1.38389 1.14321 1.30703 0.86444 0.78085 0.78368 0.84535 1.19777 1.20930 1.20864 1.20773 0.88303 0.85540 0.78892 1.90702 1.13505 1.86796 1.49714 1.20223 0.84548 0.90821 0.92802 1.21836 1.02763 1.03079 0.91561 1.86609 1.31262 1.93492 1.23528 1.20121 0.97137 0.97666 0.95675 1.20852 0.92162 0.93566 1.00018 1.21124 1.01797 0.98649 0.95781 1.17741 0.91027 0.89125 0.94565 1.91479 1.72250 1.59629 1.88891 1.21007 0.95405 1.00198 1.01019 1.20745 0.98957 0.95195 0.95101 0.93695 0.91726 0.90716 0.94899 0.93916 0.92734 0.90859 0.90350 0.90471 0.77267 0.84597 0.84692 0.84838 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 9.05 59.84 0.54 1.89 16 2 N -0.59 -12.12 2.86 -182.95 -0.52 -12.65 16 3 C 0.24 6.26 5.16 -5.19 -0.03 6.23 16 4 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.48 9.52 6.60 -10.98 -0.07 9.45 16 13 O -0.53 -12.68 14.81 5.55 0.08 -12.60 16 14 C 0.16 2.33 0.79 -92.92 -0.07 2.26 16 15 C -0.14 -1.76 8.32 37.16 0.31 -1.45 16 16 O -0.54 -6.55 9.00 -35.23 -0.32 -6.86 16 17 C -0.10 -1.47 4.52 -104.62 -0.47 -1.94 16 18 C -0.05 -0.68 8.01 -39.59 -0.32 -1.00 16 19 C -0.15 -2.03 10.03 -39.52 -0.40 -2.43 16 20 C 0.09 1.23 7.30 -39.42 -0.29 0.94 16 21 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 22 C -0.16 -1.84 10.03 -39.51 -0.40 -2.24 16 23 C -0.08 -0.98 9.24 -39.59 -0.37 -1.34 16 24 H 0.04 0.62 7.90 -51.93 -0.41 0.21 16 25 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 26 H 0.07 1.06 4.28 -51.93 -0.22 0.83 16 27 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.02 7.00 -51.93 -0.36 0.66 16 32 H 0.08 1.02 6.44 -51.93 -0.33 0.68 16 33 H 0.38 3.70 7.75 45.56 0.35 4.06 16 34 H 0.14 1.96 7.04 -52.49 -0.37 1.59 16 35 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.24 6.43 -52.49 -0.34 0.91 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -32.68 312.74 -5.99 -38.67 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -3.72 Total: 2.65 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.98 Total: -3.02 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.21 Total: -38.30 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.23 Total: -19.46 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.68 -5.99 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930593067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.039 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds