Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00123 * 2 1 4 4 C 1.50706 * 109.46805 * 269.99586 * 3 2 1 5 5 H 1.07997 * 119.99829 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99529 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00526 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99838 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46778 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47386 * 119.99782 * 8 6 4 11 11 H 1.48494 * 109.47430 * 240.00029 * 8 6 4 12 12 C 1.34780 * 120.00347 * 179.97438 * 2 1 3 13 13 O 1.21286 * 120.00220 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99781 * 0.02562 * 12 2 1 15 15 C 1.52995 * 109.46859 * 81.01887 * 14 12 2 16 16 O 1.42906 * 109.46611 * 321.02044 * 14 12 2 17 17 C 1.50701 * 109.46889 * 201.02327 * 14 12 2 18 18 C 1.38242 * 119.97230 * 292.32582 * 17 14 12 19 19 C 1.38200 * 120.01875 * 179.72872 * 18 17 14 20 20 C 1.38452 * 119.97917 * 0.52691 * 19 18 17 21 21 F 1.35099 * 120.02673 * 179.72298 * 20 19 18 22 22 C 1.38465 * 119.94967 * 359.75214 * 20 19 18 23 23 C 1.38203 * 119.97026 * 359.97438 * 22 20 19 24 24 H 1.08994 * 109.47399 * 270.00583 * 1 2 3 25 25 H 1.09006 * 109.46987 * 30.00336 * 1 2 3 26 26 H 1.09001 * 109.46783 * 149.99741 * 1 2 3 27 27 H 1.08996 * 109.46783 * 29.99602 * 3 2 1 28 28 H 1.09003 * 109.47326 * 149.99945 * 3 2 1 29 29 H 0.96991 * 120.00333 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46712 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.47033 * 60.00544 * 15 14 12 32 32 H 1.08993 * 109.47503 * 299.99846 * 15 14 12 33 33 H 0.96695 * 114.00223 * 299.99622 * 16 14 12 34 34 H 1.07995 * 119.98937 * 359.97438 * 18 17 14 35 35 H 1.08010 * 120.01005 * 180.30122 * 19 18 17 36 36 H 1.07996 * 120.01259 * 179.97438 * 22 20 19 37 37 H 1.07994 * 119.98448 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5525 3.6186 -0.6732 8 14 3.4369 3.4174 -3.4340 9 1 2.8590 2.4173 -4.3673 10 1 2.7989 4.7379 -3.6672 11 1 4.8993 3.5261 -3.6677 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 0.9360 -2.8017 -1.4244 16 8 0.2399 -2.3609 0.8476 17 6 2.2827 -3.5703 0.5108 18 6 3.3755 -3.9717 -0.2347 19 6 4.2021 -4.9747 0.2350 20 6 3.9294 -5.5850 1.4475 21 9 4.7337 -6.5694 1.9049 22 6 2.8313 -5.1860 2.1906 23 6 2.0092 -4.1790 1.7216 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 4.0293 4.4444 -0.8505 30 1 0.3914 -3.7459 -1.4244 31 1 1.8098 -2.8866 -2.0704 32 1 0.2871 -2.0075 -1.7934 33 1 0.4502 -2.1529 1.7682 34 1 3.5854 -3.4987 -1.1826 35 1 5.0587 -5.2848 -0.3453 36 1 2.6174 -5.6617 3.1363 37 1 1.1529 -3.8674 2.3012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930593067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = -117.681028 kcal Electronic energy + Delta-G solvation = -22332.734642 eV Core-core repulsion = 18796.096911 eV Total energy + Delta-G solvation = -3536.637731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.92413 -41.74561 -39.64064 -37.73767 -36.58430 -34.63251 -33.26175 -31.98648 -30.40196 -29.51352 -27.46284 -25.81845 -24.56349 -23.94047 -22.41644 -20.46425 -19.29799 -18.69276 -18.43082 -17.64500 -17.31511 -16.95888 -16.60476 -16.42907 -16.11116 -15.60480 -15.06787 -14.90658 -14.64314 -14.26235 -14.22684 -13.89765 -13.62968 -13.57170 -13.41779 -13.26746 -13.20237 -12.95908 -12.76531 -12.63649 -12.48399 -12.22269 -11.95913 -11.68445 -11.61713 -10.65774 -10.33139 -10.04499 -9.60755 -9.41923 -8.23305 -6.38094 0.05914 0.27525 1.36404 1.38289 1.49998 1.67058 2.20657 2.39162 2.65950 3.06606 3.06713 3.24285 3.47027 3.60539 3.75381 3.93833 4.07592 4.31672 4.44265 4.50484 4.67754 4.75206 4.80580 4.92170 4.94251 4.99411 5.02740 5.12181 5.19244 5.21246 5.25383 5.47442 5.55825 5.82114 5.87609 6.04731 6.43613 6.69994 6.77410 7.25661 7.41572 8.83956 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.004584 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.482997 B = 6107.273468 C = 6615.933095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.596 5.596 3 C 0.257 3.743 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.473 3.527 13 O -0.580 6.580 14 C 0.182 3.818 15 C -0.137 4.137 16 O -0.531 6.531 17 C -0.122 4.122 18 C -0.065 4.065 19 C -0.163 4.163 20 C 0.084 3.916 21 F -0.146 7.146 22 C -0.153 4.153 23 C -0.077 4.077 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.023 0.977 28 H -0.002 1.002 29 H 0.267 0.733 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.391 0.609 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.162 0.838 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -17.121 3.424 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.326 5.326 3 C 0.136 3.864 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.260 3.740 13 O -0.461 6.461 14 C 0.137 3.863 15 C -0.193 4.193 16 O -0.339 6.339 17 C -0.123 4.123 18 C -0.083 4.083 19 C -0.182 4.182 20 C 0.065 3.935 21 F -0.125 7.125 22 C -0.171 4.171 23 C -0.095 4.095 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.041 0.959 28 H 0.016 0.984 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.242 0.758 34 H 0.142 0.858 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.700 -17.098 2.946 18.982 hybrid contribution 1.222 0.838 -0.198 1.495 sum -6.478 -16.260 2.749 17.717 Atomic orbital electron populations 1.22074 0.77564 1.03349 1.02854 1.48147 1.08499 1.06008 1.69980 1.18800 0.91071 0.80407 0.96124 1.21716 1.36681 1.06530 0.92992 0.92748 1.25847 0.94928 0.96422 1.01890 1.70053 1.39016 1.14821 1.32996 0.85382 0.77845 0.78454 0.79229 1.18942 1.19506 1.20814 1.21848 0.88091 0.86946 0.77140 1.90669 1.16038 1.87739 1.51621 1.19868 0.84598 0.87500 0.94289 1.21881 1.02726 1.04368 0.90371 1.86598 1.29726 1.93212 1.24357 1.20193 0.97264 0.98001 0.96799 1.20865 0.93047 0.94293 1.00125 1.21259 1.02079 0.98528 0.96309 1.17944 0.91596 0.89236 0.94747 1.91474 1.72425 1.59692 1.88860 1.21349 0.94363 0.99683 1.01705 1.21079 0.99684 0.94533 0.94199 0.90954 0.92660 0.88337 0.95873 0.98358 0.92422 0.88154 0.91096 0.90590 0.75754 0.85826 0.83654 0.82010 0.81705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 9.05 127.77 1.16 3.68 16 2 N -0.60 -24.62 2.86 -851.10 -2.43 -27.06 16 3 C 0.26 13.74 5.16 85.63 0.44 14.18 16 4 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 8 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 C 0.47 18.81 6.60 87.66 0.58 19.39 16 13 O -0.58 -28.79 14.81 -3.05 -0.05 -28.83 16 14 C 0.18 4.99 0.79 -12.29 -0.01 4.98 16 15 C -0.14 -3.31 8.32 71.98 0.60 -2.71 16 16 O -0.53 -11.01 9.00 -148.98 -1.34 -12.35 16 17 C -0.12 -3.23 4.52 -19.86 -0.09 -3.32 16 18 C -0.07 -1.86 8.01 22.26 0.18 -1.68 16 19 C -0.16 -4.22 10.03 22.31 0.22 -4.00 16 20 C 0.08 2.06 7.30 22.37 0.16 2.22 16 21 F -0.15 -3.62 17.27 44.97 0.78 -2.84 16 22 C -0.15 -3.15 10.03 22.32 0.22 -2.93 16 23 C -0.08 -1.62 9.24 22.26 0.21 -1.41 16 24 H 0.07 1.80 7.90 -2.39 -0.02 1.78 16 25 H 0.05 1.78 8.07 -2.38 -0.02 1.76 16 26 H 0.10 2.52 4.28 -2.39 -0.01 2.51 16 27 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 28 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 29 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.82 7.00 -2.39 -0.02 1.81 16 32 H 0.08 1.85 6.44 -2.39 -0.02 1.83 16 33 H 0.39 6.17 7.75 -74.06 -0.57 5.60 16 34 H 0.12 3.73 7.04 -2.91 -0.02 3.71 16 35 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.17 2.34 6.43 -2.91 -0.02 2.32 16 Total: -1.00 -72.82 312.74 4.17 -68.65 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.53 Total: 12.85 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 4.37 Total: -1.30 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.15 Total: -82.76 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.39 Total: -41.18 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.82 4.17 -68.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930593067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.033 kcal (2) G-P(sol) polarization free energy of solvation -72.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds