Wall clock time and date at job start Tue Mar 31 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 C 1.52994 * 109.47397 * 239.99962 * 2 1 3 5 5 C 1.50702 * 109.47055 * 295.00068 * 4 2 1 6 6 C 1.33812 * 124.52212 * 90.00101 * 5 4 2 7 7 C 1.37475 * 115.09982 * 179.97438 * 6 5 4 8 8 C 1.36650 * 113.29575 * 359.97438 * 7 6 5 9 9 C 1.46586 * 125.45637 * 180.02562 * 8 7 6 10 10 O 1.21706 * 120.00192 * 351.38600 * 9 8 7 11 11 N 1.34778 * 119.99841 * 171.37775 * 9 8 7 12 12 C 1.46501 * 120.00050 * 0.04086 * 11 9 8 13 13 C 1.46496 * 119.99886 * 180.02562 * 11 9 8 14 14 C 1.50706 * 109.46875 * 90.00227 * 13 11 9 15 15 H 1.07995 * 120.00018 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99552 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00180 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99735 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46892 * 90.00640 * 18 16 14 20 20 H 1.48493 * 109.47232 * 210.00460 * 18 16 14 21 21 H 1.48500 * 109.46752 * 330.00567 * 18 16 14 22 22 S 1.70619 * 124.51927 * 269.69585 * 5 4 2 23 23 H 1.08995 * 109.47518 * 299.99864 * 1 2 3 24 24 H 1.09000 * 109.47576 * 60.00183 * 1 2 3 25 25 H 1.09006 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47096 * 119.99779 * 2 1 3 27 27 H 1.09000 * 109.47393 * 60.00410 * 3 2 1 28 28 H 1.09008 * 109.46590 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47140 * 299.99753 * 3 2 1 30 30 H 1.08999 * 109.47152 * 54.99999 * 4 2 1 31 31 H 1.09000 * 109.47739 * 174.99479 * 4 2 1 32 32 H 1.07996 * 122.45347 * 359.97238 * 6 5 4 33 33 H 1.08004 * 123.35376 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47118 * 83.43909 * 12 11 9 35 35 H 1.08999 * 109.47304 * 203.44169 * 12 11 9 36 36 H 1.09007 * 109.47038 * 323.44263 * 12 11 9 37 37 H 1.09002 * 109.46751 * 209.99989 * 13 11 9 38 38 H 1.08997 * 109.47265 * 330.00148 * 13 11 9 39 39 H 0.97006 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 -2.1733 -1.1888 6 6 0.4987 -2.6670 -1.6799 7 6 0.3325 -4.0223 -1.5196 8 6 1.3798 -4.6233 -0.8799 9 6 1.4805 -6.0528 -0.5714 10 8 0.5223 -6.7822 -0.7471 11 7 2.6344 -6.5593 -0.0934 12 6 3.7877 -5.6811 0.1188 13 6 2.7352 -7.9880 0.2144 14 6 3.2079 -8.7329 -1.0075 15 1 3.4130 -8.1957 -1.9216 16 6 3.3793 -10.1001 -0.9579 17 7 3.1300 -10.7541 0.1555 18 14 3.9645 -11.0235 -2.4727 19 1 5.4481 -11.0871 -2.4712 20 1 3.4100 -12.4010 -2.4575 21 1 3.5004 -10.3165 -3.6933 22 16 2.5901 -3.4082 -0.4918 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6054 -0.2617 -2.1369 31 1 3.1263 -0.6443 -1.2952 32 1 -0.2390 -2.0463 -2.1666 33 1 -0.5391 -4.5586 -1.8649 34 1 3.6962 -5.1887 1.0869 35 1 4.7033 -6.2720 0.0968 36 1 3.8215 -4.9290 -0.6696 37 1 3.4463 -8.1352 1.0273 38 1 1.7575 -8.3650 0.5142 39 1 3.2503 -11.7161 0.1902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930593564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:01 Heat of formation + Delta-G solvation = -18.557370 kcal Electronic energy + Delta-G solvation = -19503.740508 eV Core-core repulsion = 16537.614278 eV Total energy + Delta-G solvation = -2966.126230 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.11384 -38.12921 -35.90708 -34.83858 -32.67508 -30.64660 -28.26817 -27.42544 -26.79160 -25.74501 -23.70511 -22.65299 -20.51926 -20.10342 -18.21694 -17.34479 -16.54261 -15.87420 -15.32911 -15.04786 -14.81727 -14.77806 -14.41504 -14.02957 -13.35674 -13.01748 -12.69920 -12.61473 -12.53346 -12.42522 -12.32089 -12.04645 -12.02424 -11.62178 -11.24808 -11.16230 -11.04541 -10.93420 -10.91754 -10.64246 -10.26182 -10.09683 -9.67107 -9.13720 -8.45604 -8.43584 -8.31891 -7.68018 -6.05733 -4.10759 0.80565 1.71381 2.15205 2.67007 3.30077 3.36845 3.41635 3.79142 3.96137 4.44371 4.53496 4.63758 4.70419 5.05432 5.11506 5.27765 5.29236 5.39457 5.42572 5.43109 5.51839 5.59984 5.61657 5.67013 5.74171 5.81419 5.91946 6.07012 6.08386 6.10583 6.20000 6.37159 6.59254 7.01565 7.39471 7.46869 7.90285 8.20046 8.30100 8.85857 9.01108 9.54345 11.02353 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037909 B = 0.003671 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.435004 B = 7626.449723 C = 7774.544914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.043 4.043 5 C -0.233 4.233 6 C -0.149 4.149 7 C -0.069 4.069 8 C -0.248 4.248 9 C 0.574 3.426 10 O -0.529 6.529 11 N -0.595 5.595 12 C 0.070 3.930 13 C 0.246 3.754 14 C -0.529 4.529 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 S 0.217 5.783 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 22.914 -0.021 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.082 4.082 5 C -0.351 4.351 6 C -0.179 4.179 7 C -0.102 4.102 8 C -0.368 4.368 9 C 0.360 3.640 10 O -0.408 6.408 11 N -0.326 5.326 12 C -0.076 4.076 13 C 0.128 3.872 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.198 1.198 22 S 0.486 5.514 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.892 22.305 0.690 22.333 hybrid contribution -1.061 -0.457 -1.624 1.993 sum -0.169 21.848 -0.934 21.868 Atomic orbital electron populations 1.21901 0.94947 1.02529 1.01370 1.21120 0.96447 0.95766 0.97803 1.21847 1.00948 0.95790 1.01844 1.20206 1.00799 0.88389 0.98790 1.24773 1.00994 1.01870 1.07512 1.19828 0.98326 0.94735 1.05024 1.20673 0.98547 0.93682 0.97260 1.24952 1.01100 0.98153 1.12615 1.16975 0.83738 0.84707 0.78584 1.90799 1.37297 1.59356 1.53367 1.48051 1.10053 1.11678 1.62840 1.21856 0.91618 0.94248 0.99883 1.19370 0.98846 0.72607 0.96412 1.21434 1.45139 0.92431 0.97735 0.92353 1.24935 0.95383 0.97364 0.96366 1.69933 1.48669 1.08571 1.26148 0.86477 0.78642 0.79097 0.83116 1.20595 1.21039 1.19842 1.83578 1.18308 0.93715 1.55750 0.92917 0.92849 0.91850 0.90963 0.92552 0.92641 0.92664 0.90476 0.90955 0.84946 0.83454 0.92711 0.88849 0.91939 0.94623 0.93506 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.87 37.16 0.33 -0.93 16 2 C -0.09 -0.75 2.91 -90.62 -0.26 -1.02 16 3 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 4 C -0.04 -0.38 5.12 -27.89 -0.14 -0.52 16 5 C -0.23 -2.72 5.05 -35.86 -0.18 -2.90 16 6 C -0.15 -1.88 8.50 -41.41 -0.35 -2.23 16 7 C -0.07 -1.08 10.02 -40.43 -0.41 -1.49 16 8 C -0.25 -4.36 6.24 -36.79 -0.23 -4.59 16 9 C 0.57 12.92 7.64 -12.89 -0.10 12.82 16 10 O -0.53 -14.08 16.43 5.18 0.09 -14.00 16 11 N -0.59 -13.15 2.86 -184.54 -0.53 -13.68 16 12 C 0.07 1.16 8.92 59.85 0.53 1.69 16 13 C 0.25 6.53 5.13 -5.19 -0.03 6.50 16 14 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 18 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 S 0.22 2.84 17.84 -107.50 -1.92 0.92 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.62 6.38 -51.93 -0.33 0.29 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.15 2.32 8.06 -52.48 -0.42 1.90 16 34 H 0.05 0.77 7.76 -51.93 -0.40 0.36 16 35 H 0.09 1.51 8.02 -51.93 -0.42 1.09 16 36 H 0.06 0.93 4.61 -23.19 -0.11 0.82 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.05 1.39 7.42 -51.93 -0.39 1.01 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -32.79 333.35 -8.37 -41.16 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.83 Total: -3.40 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.91 Total: -7.09 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.21 Total: -39.57 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.09 Total: -14.00 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.92 Total: 0.92 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.79 -8.37 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930593564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.599 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds