Wall clock time and date at job start Tue Mar 31 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48505 * 109.47260 * 240.00020 * 3 2 1 5 5 H 1.48506 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47335 * 119.99728 * 3 2 1 7 7 C 1.38801 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99716 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99898 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47291 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47101 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46645 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99716 * 169.99784 * 13 12 11 15 15 C 1.50696 * 109.47252 * 285.10061 * 14 13 12 16 16 C 1.41386 * 126.57664 * 275.29783 * 15 14 13 17 17 C 1.34508 * 106.84063 * 179.83560 * 16 15 14 18 18 O 1.34310 * 108.41987 * 0.43073 * 17 16 15 19 19 C 1.34301 * 109.47435 * 359.72432 * 18 17 16 20 20 C 1.46895 * 111.00165 * 293.95398 * 13 12 11 21 21 C 1.53000 * 117.49805 * 246.97653 * 20 13 12 22 22 C 1.52995 * 60.00449 * 252.51320 * 21 20 13 23 23 H 0.97001 * 119.99782 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47419 * 60.00142 * 10 9 7 25 25 H 1.09005 * 109.46972 * 300.00511 * 10 9 7 26 26 H 1.09005 * 109.46704 * 300.00210 * 11 10 9 27 27 H 1.08998 * 109.47136 * 59.99524 * 11 10 9 28 28 H 1.08995 * 109.47090 * 300.00021 * 12 11 10 29 29 H 1.09001 * 109.46786 * 59.99942 * 12 11 10 30 30 H 1.09004 * 109.46745 * 45.09652 * 14 13 12 31 31 H 1.08994 * 109.46862 * 165.09325 * 14 13 12 32 32 H 1.08005 * 126.58071 * 359.97438 * 16 15 14 33 33 H 1.08008 * 125.79281 * 180.11575 * 17 16 15 34 34 H 1.07999 * 125.78797 * 180.02562 * 19 18 17 35 35 H 1.08999 * 115.55413 * 32.68899 * 20 13 12 36 36 H 1.09005 * 117.49977 * 0.02562 * 21 20 13 37 37 H 1.09000 * 117.50017 * 145.02030 * 21 20 13 38 38 H 1.08999 * 117.49959 * 252.51284 * 22 21 20 39 39 H 1.09004 * 117.52055 * 107.47772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3243 -0.0012 12 6 3.1515 -6.3077 -0.0018 13 7 2.6363 -7.6834 -0.0018 14 6 3.7165 -8.6500 -0.2406 15 6 4.1056 -8.6190 -1.6961 16 6 3.4849 -9.3290 -2.7495 17 6 4.1449 -9.0091 -3.8771 18 8 5.1329 -8.1553 -3.5628 19 6 5.1138 -7.9152 -2.2415 20 6 1.9308 -7.9814 1.2517 21 6 2.5591 -9.0162 2.1872 22 6 1.2987 -9.3675 1.3943 23 1 -0.4850 0.8401 -0.0004 24 1 3.1245 -3.7314 0.8894 25 1 3.1246 -3.7312 -0.8905 26 1 1.3705 -5.4846 0.8886 27 1 1.3710 -5.4840 -0.8913 28 1 3.7600 -6.1472 -0.8918 29 1 3.7602 -6.1480 0.8882 30 1 4.5795 -8.3890 0.3718 31 1 3.3734 -9.6505 0.0226 32 1 2.6412 -9.9979 -2.6654 33 1 3.9218 -9.3802 -4.8665 34 1 5.7926 -7.2666 -1.7076 35 1 1.4086 -7.1407 1.7086 36 1 3.4963 -9.4756 1.8728 37 1 2.4507 -8.8563 3.2600 38 1 0.3610 -9.4387 1.9454 39 1 1.4060 -10.0580 0.5578 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934004470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:14 Heat of formation + Delta-G solvation = 20.617711 kcal Electronic energy + Delta-G solvation = -19161.109250 eV Core-core repulsion = 16196.681779 eV Total energy + Delta-G solvation = -2964.427471 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.40728 -40.05884 -36.03065 -34.85519 -34.58983 -32.63837 -30.49803 -28.12282 -27.54610 -25.50403 -23.29540 -23.04661 -22.40973 -21.50333 -20.43676 -19.54535 -18.45363 -17.35510 -17.08090 -16.89353 -16.58076 -16.12441 -15.91405 -15.58319 -15.04462 -14.62881 -14.55749 -13.71211 -13.63619 -13.58629 -13.48156 -13.23539 -13.00255 -12.90076 -12.59654 -12.41955 -12.28197 -12.24411 -11.95615 -11.42596 -11.41373 -11.19251 -11.12331 -10.58410 -10.31690 -9.43663 -9.05395 -8.66757 -8.36920 -6.13559 0.89784 1.31153 1.40919 1.47625 1.65586 1.76482 2.28725 2.34963 2.80141 2.97194 3.13187 3.32843 3.83324 3.90553 3.95520 3.97451 4.09244 4.13366 4.17642 4.32287 4.37481 4.46471 4.58832 4.60972 4.70419 4.77898 4.79365 4.87246 4.97490 5.08467 5.17029 5.19981 5.26683 5.29277 5.33598 5.39359 5.62787 6.09884 6.12338 6.18025 6.26207 7.04948 8.72370 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.003624 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.182757 B = 7723.624851 C = 8800.314200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.073 0.927 9 S -0.198 6.198 10 C -0.086 4.086 11 C -0.079 4.079 12 C 0.073 3.927 13 N -0.509 5.509 14 C 0.123 3.877 15 C -0.182 4.182 16 C -0.212 4.212 17 C -0.048 4.048 18 O -0.193 6.193 19 C -0.049 4.049 20 C 0.001 3.999 21 C -0.209 4.209 22 C -0.166 4.166 23 H 0.271 0.729 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.155 0.845 33 H 0.231 0.769 34 H 0.215 0.785 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 -21.327 -1.077 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.688 4.688 8 H 0.091 0.909 9 S 0.031 5.969 10 C -0.235 4.235 11 C -0.118 4.118 12 C -0.056 4.056 13 N -0.231 5.231 14 C -0.004 4.004 15 C -0.184 4.184 16 C -0.232 4.232 17 C -0.115 4.115 18 O -0.089 6.089 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.248 4.248 22 C -0.203 4.203 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.173 0.827 33 H 0.247 0.753 34 H 0.231 0.769 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.076 -21.320 -1.676 22.860 hybrid contribution 1.757 1.360 0.708 2.332 sum 9.833 -19.961 -0.968 22.272 Atomic orbital electron populations 1.70156 1.07721 1.28613 1.47936 1.26070 0.96018 1.03101 0.93700 0.85073 0.77953 0.76056 0.79378 1.18951 1.19925 1.18827 1.23016 0.94742 0.92015 1.58995 0.90912 1.84661 1.14088 1.01152 1.97032 1.23138 1.00116 0.97478 1.02799 1.21133 0.97938 0.90357 1.02347 1.21974 0.95618 0.86931 1.01061 1.61733 1.27072 1.02162 1.32156 1.20498 0.92653 0.97003 0.90246 1.20485 0.98531 1.02182 0.97183 1.21923 1.03638 1.05284 0.92320 1.24650 0.90123 0.95114 1.01629 1.84069 1.46801 1.52400 1.25601 1.24282 1.02782 1.03686 0.80948 1.22758 1.02637 0.94251 0.91113 1.23615 0.98003 1.04518 0.98697 1.23105 0.97410 0.97369 1.02453 0.91954 0.91838 0.92144 0.91786 0.92282 0.90622 0.93937 0.92818 0.88724 0.82734 0.75284 0.76873 0.86983 0.87698 0.88131 0.87726 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.52 13.22 21.65 0.29 -55.23 16 2 C 0.02 0.92 5.49 84.86 0.47 1.39 16 3 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.54 -31.67 9.50 67.95 0.65 -31.03 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.20 -10.78 21.44 -56.49 -1.21 -11.99 16 10 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 11 C -0.08 -2.66 5.21 30.60 0.16 -2.50 16 12 C 0.07 1.95 4.79 86.30 0.41 2.36 16 13 N -0.51 -12.12 4.65 -875.52 -4.07 -16.19 16 14 C 0.12 2.40 4.14 85.55 0.35 2.75 16 15 C -0.18 -3.86 5.19 -19.94 -0.10 -3.97 16 16 C -0.21 -4.27 10.87 22.19 0.24 -4.03 16 17 C -0.05 -0.89 12.09 66.97 0.81 -0.08 16 18 O -0.19 -4.27 10.65 -2.53 -0.03 -4.29 16 19 C -0.05 -1.01 11.02 66.97 0.74 -0.27 16 20 C 0.00 0.03 5.83 44.92 0.26 0.29 16 21 C -0.21 -3.54 9.56 30.59 0.29 -3.25 16 22 C -0.17 -2.95 9.91 30.60 0.30 -2.65 16 23 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 24 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.06 2.17 6.40 -2.38 -0.02 2.15 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.01 6.61 -2.39 -0.02 1.99 16 29 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.05 0.95 7.82 -2.38 -0.02 0.93 16 31 H 0.09 1.65 5.59 -2.39 -0.01 1.64 16 32 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.23 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.11 2.76 6.34 -2.39 -0.02 2.75 16 36 H 0.10 1.59 6.03 -2.38 -0.01 1.57 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 1.68 7.45 -2.38 -0.02 1.66 16 Total: -1.00 -69.57 335.47 3.03 -66.55 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.03 Total: 18.97 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 4.99 Total: -44.09 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -3.78 Total: -71.42 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.03 Total: -4.29 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -10.78 SS G_CDS: -1.21 Total: -11.99 kcal Total: -69.57 3.03 -66.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934004470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.163 kcal (2) G-P(sol) polarization free energy of solvation -69.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds