Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 C 1.33817 * 124.52077 * 89.72319 * 5 4 2 7 7 C 1.37472 * 115.10082 * 179.85789 * 6 5 4 8 8 C 1.36647 * 113.29633 * 0.42028 * 7 6 5 9 9 C 1.46577 * 125.45909 * 179.81235 * 8 7 6 10 10 O 1.21700 * 120.00315 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00348 * 179.97438 * 9 8 7 12 12 C 1.46491 * 120.00322 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47318 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47438 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99733 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00064 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00186 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99704 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46829 * 90.00419 * 18 16 14 20 20 H 1.48506 * 109.46872 * 210.00237 * 18 16 14 21 21 H 1.48488 * 109.47109 * 330.00007 * 18 16 14 22 22 S 1.70611 * 124.52196 * 270.02912 * 5 4 2 23 23 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 30 30 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 31 31 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 32 32 H 1.08004 * 122.44748 * 0.02562 * 6 5 4 33 33 H 1.08001 * 123.35238 * 180.20023 * 7 6 5 34 34 H 0.97001 * 119.99389 * 359.97438 * 11 9 8 35 35 H 1.09000 * 109.47266 * 299.99739 * 12 11 9 36 36 H 1.08999 * 109.47557 * 59.99897 * 12 11 9 37 37 H 1.09007 * 109.47027 * 300.00011 * 13 12 11 38 38 H 1.08998 * 109.47162 * 59.99964 * 13 12 11 39 39 H 0.96998 * 119.99640 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1890 6 6 0.4962 -2.6662 -1.6753 7 6 0.3316 -4.0220 -1.5183 8 6 1.3783 -4.6229 -0.8777 9 6 1.4785 -6.0521 -0.5682 10 8 0.5800 -6.8083 -0.8874 11 7 2.5657 -6.5289 0.0700 12 6 2.6655 -7.9572 0.3798 13 6 3.9868 -8.2316 1.1007 14 6 4.0898 -9.7010 1.4189 15 1 3.2927 -10.3722 1.1349 16 6 5.2021 -10.1887 2.0715 17 7 6.1729 -9.3715 2.4169 18 14 5.3294 -12.0101 2.4665 19 1 5.9884 -12.7163 1.3386 20 1 6.1322 -12.1937 3.7023 21 1 3.9688 -12.5681 2.6727 22 16 2.5864 -3.4070 -0.4850 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6053 -0.2617 -2.1370 31 1 3.1263 -0.6444 -1.2952 32 1 -0.2434 -2.0447 -2.1583 33 1 -0.5400 -4.5582 -1.8636 34 1 3.2820 -5.9262 0.3241 35 1 1.8344 -8.2487 1.0220 36 1 2.6294 -8.5330 -0.5450 37 1 4.8183 -7.9400 0.4589 38 1 4.0225 -7.6558 2.0255 39 1 6.9552 -9.7147 2.8764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935337991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -40.163776 kcal Electronic energy + Delta-G solvation = -18735.895762 eV Core-core repulsion = 15768.832607 eV Total energy + Delta-G solvation = -2967.063154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40623 -38.32533 -36.07890 -34.85377 -32.87260 -30.98245 -29.65717 -27.55009 -27.03836 -24.80874 -23.57863 -21.56411 -20.80178 -20.47804 -19.09880 -17.83547 -16.40920 -16.15917 -15.38174 -15.10383 -15.05135 -14.72540 -14.59111 -14.39572 -13.65958 -13.30872 -13.13586 -12.88881 -12.56387 -12.49060 -12.35723 -12.23143 -11.88090 -11.31112 -11.22870 -11.16615 -11.06605 -11.03486 -10.86566 -10.64455 -10.35569 -9.91856 -9.54602 -9.25497 -8.78746 -8.64423 -8.51988 -8.35145 -6.09703 -4.12650 0.50717 1.41603 1.84936 2.38393 3.29603 3.35556 3.39491 3.48147 3.62197 4.36355 4.41790 4.51961 4.59341 4.89991 5.08100 5.15926 5.25127 5.27381 5.30368 5.33819 5.42319 5.49150 5.56592 5.65818 5.81435 5.91099 5.97613 6.01703 6.09405 6.30429 6.32436 6.35609 6.70573 6.83174 7.50011 7.59913 7.87823 7.92158 8.26089 8.53894 8.93063 9.52196 11.01946 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.003010 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.971329 B = 9300.879343 C = 9985.345611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.046 4.046 5 C -0.196 4.196 6 C -0.151 4.151 7 C -0.062 4.062 8 C -0.257 4.257 9 C 0.579 3.421 10 O -0.540 6.540 11 N -0.717 5.717 12 C 0.122 3.878 13 C 0.012 3.988 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 S 0.203 5.797 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.395 0.605 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 21.982 -6.507 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.085 4.085 5 C -0.316 4.316 6 C -0.182 4.182 7 C -0.095 4.095 8 C -0.377 4.377 9 C 0.365 3.635 10 O -0.419 6.419 11 N -0.366 5.366 12 C 0.000 4.000 13 C -0.026 4.026 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 S 0.471 5.529 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.228 0.772 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.024 21.361 -5.901 23.248 hybrid contribution -0.895 -0.607 -0.370 1.143 sum -7.918 20.754 -6.270 23.081 Atomic orbital electron populations 1.21913 0.94858 1.02466 1.01575 1.21144 0.96500 0.95987 0.97635 1.21843 1.01064 0.95592 1.01963 1.20290 1.01241 0.87792 0.99215 1.24191 1.00099 1.01047 1.06280 1.19910 0.98320 0.94850 1.05089 1.20717 0.98405 0.93620 0.96710 1.24794 1.01773 0.97982 1.13184 1.17024 0.82843 0.85280 0.78395 1.90797 1.39247 1.57837 1.54049 1.46253 1.20094 1.12010 1.58243 1.21792 1.01361 0.76986 0.99862 1.19339 0.90058 0.97695 0.95471 1.21037 1.04320 0.92742 1.37924 0.92187 1.24997 0.95609 0.98156 0.95520 1.69956 1.08206 1.34804 1.40294 0.86503 0.78212 0.84953 0.77835 1.20545 1.21155 1.19721 1.83143 1.20013 0.95529 1.54170 0.92747 0.92743 0.91944 0.90836 0.92421 0.92536 0.92593 0.89897 0.90574 0.84167 0.83160 0.77171 0.92224 0.92219 0.95870 0.95855 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.87 37.16 0.33 -0.74 16 2 C -0.09 -0.66 2.91 -90.62 -0.26 -0.93 16 3 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 4 C -0.05 -0.34 5.12 -27.88 -0.14 -0.49 16 5 C -0.20 -1.94 5.06 -35.86 -0.18 -2.12 16 6 C -0.15 -1.55 8.48 -41.41 -0.35 -1.90 16 7 C -0.06 -0.79 10.01 -40.44 -0.40 -1.20 16 8 C -0.26 -3.79 6.45 -36.80 -0.24 -4.03 16 9 C 0.58 10.74 7.78 -12.90 -0.10 10.64 16 10 O -0.54 -11.73 16.84 5.19 0.09 -11.64 16 11 N -0.72 -13.38 5.55 -61.66 -0.34 -13.72 16 12 C 0.12 2.66 5.61 -4.05 -0.02 2.63 16 13 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 14 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 15 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 18 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 S 0.20 2.36 22.10 -107.50 -2.38 -0.02 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.52 6.36 -51.93 -0.33 0.18 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.39 6.57 7.59 -40.82 -0.31 6.26 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -31.25 341.60 -9.45 -40.71 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.10 Total: 0.30 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.59 Total: -11.78 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.39 Total: -39.13 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.38 Total: -0.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.25 -9.45 -40.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935337991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.543 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds