Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 C 1.33817 * 124.52077 * 89.72319 * 5 4 2 7 7 C 1.37472 * 115.10082 * 179.85789 * 6 5 4 8 8 C 1.36647 * 113.29633 * 0.42028 * 7 6 5 9 9 C 1.46577 * 125.45909 * 179.81235 * 8 7 6 10 10 O 1.21700 * 120.00315 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00348 * 179.97438 * 9 8 7 12 12 C 1.46491 * 120.00322 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47318 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47438 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99733 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00064 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00186 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99704 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46829 * 90.00419 * 18 16 14 20 20 H 1.48506 * 109.46872 * 210.00237 * 18 16 14 21 21 H 1.48488 * 109.47109 * 330.00007 * 18 16 14 22 22 S 1.70611 * 124.52196 * 270.02912 * 5 4 2 23 23 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 30 30 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 31 31 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 32 32 H 1.08004 * 122.44748 * 0.02562 * 6 5 4 33 33 H 1.08001 * 123.35238 * 180.20023 * 7 6 5 34 34 H 0.97001 * 119.99389 * 359.97438 * 11 9 8 35 35 H 1.09000 * 109.47266 * 299.99739 * 12 11 9 36 36 H 1.08999 * 109.47557 * 59.99897 * 12 11 9 37 37 H 1.09007 * 109.47027 * 300.00011 * 13 12 11 38 38 H 1.08998 * 109.47162 * 59.99964 * 13 12 11 39 39 H 0.96998 * 119.99640 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1890 6 6 0.4962 -2.6662 -1.6753 7 6 0.3316 -4.0220 -1.5183 8 6 1.3783 -4.6229 -0.8777 9 6 1.4785 -6.0521 -0.5682 10 8 0.5800 -6.8083 -0.8874 11 7 2.5657 -6.5289 0.0700 12 6 2.6655 -7.9572 0.3798 13 6 3.9868 -8.2316 1.1007 14 6 4.0898 -9.7010 1.4189 15 1 3.2927 -10.3722 1.1349 16 6 5.2021 -10.1887 2.0715 17 7 6.1729 -9.3715 2.4169 18 14 5.3294 -12.0101 2.4665 19 1 5.9884 -12.7163 1.3386 20 1 6.1322 -12.1937 3.7023 21 1 3.9688 -12.5681 2.6727 22 16 2.5864 -3.4070 -0.4850 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6053 -0.2617 -2.1370 31 1 3.1263 -0.6444 -1.2952 32 1 -0.2434 -2.0447 -2.1583 33 1 -0.5400 -4.5582 -1.8636 34 1 3.2820 -5.9262 0.3241 35 1 1.8344 -8.2487 1.0220 36 1 2.6294 -8.5330 -0.5450 37 1 4.8183 -7.9400 0.4589 38 1 4.0225 -7.6558 2.0255 39 1 6.9552 -9.7147 2.8764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935337991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -58.227867 kcal Electronic energy + Delta-G solvation = -18736.679079 eV Core-core repulsion = 15768.832607 eV Total energy + Delta-G solvation = -2967.846472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81414 -39.24417 -36.90208 -36.52789 -34.87356 -32.20692 -31.18154 -28.31985 -27.89344 -26.52599 -24.58577 -23.19211 -22.33602 -21.08955 -20.27002 -19.05761 -18.42453 -17.22269 -16.71566 -16.60205 -16.47879 -15.87595 -15.67060 -15.34295 -14.91578 -14.81380 -14.34373 -14.03131 -13.67080 -13.51235 -13.27499 -13.10453 -12.96490 -12.95188 -12.55515 -12.51817 -12.29301 -12.03558 -11.75540 -11.71513 -11.70247 -11.53130 -11.49740 -11.11818 -10.62494 -10.21936 -9.62792 -9.53430 -8.25266 -6.36144 -0.51527 0.44606 0.91684 1.38698 1.41515 1.42214 1.53713 2.13286 2.14693 2.42972 3.09418 3.66526 3.79863 3.97005 4.05976 4.23023 4.37606 4.43275 4.43516 4.52904 4.71619 4.75188 4.79244 4.86345 4.95403 5.03523 5.08403 5.13305 5.15628 5.18734 5.31984 5.41806 5.43166 5.48693 5.50404 5.53071 5.75318 6.12756 6.43611 6.76312 7.06172 7.33194 8.86797 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.003010 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.971329 B = 9300.879343 C = 9985.345611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.047 4.047 5 C -0.173 4.173 6 C -0.155 4.155 7 C -0.049 4.049 8 C -0.303 4.303 9 C 0.581 3.419 10 O -0.581 6.581 11 N -0.715 5.715 12 C 0.140 3.860 13 C 0.023 3.977 14 C -0.547 4.547 15 H 0.060 0.940 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.266 1.266 22 S 0.215 5.785 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.149 0.851 34 H 0.404 0.596 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 23.654 -7.068 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.086 4.086 5 C -0.293 4.293 6 C -0.185 4.185 7 C -0.083 4.083 8 C -0.423 4.423 9 C 0.369 3.631 10 O -0.463 6.463 11 N -0.365 5.365 12 C 0.017 3.983 13 C -0.015 4.015 14 C -0.586 4.586 15 H 0.078 0.922 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.191 1.191 22 S 0.484 5.516 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.187 0.813 33 H 0.167 0.833 34 H 0.240 0.760 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.227 23.059 -6.461 25.014 hybrid contribution -0.839 -0.963 -0.215 1.296 sum -8.066 22.096 -6.676 24.451 Atomic orbital electron populations 1.21919 0.94778 1.01819 1.02337 1.21132 0.96544 0.96695 0.96810 1.21818 1.01248 0.94594 1.02540 1.20463 1.02076 0.85841 1.00267 1.24617 0.99147 1.01854 1.03718 1.20086 0.99142 0.93807 1.05424 1.20949 0.97538 0.94806 0.95008 1.24431 1.04449 0.96566 1.16823 1.17472 0.81704 0.86814 0.77127 1.90756 1.40434 1.59460 1.55679 1.46062 1.20939 1.10809 1.58697 1.21325 0.99194 0.78969 0.98808 1.19144 0.91113 0.96509 0.94724 1.21440 1.04684 0.94092 1.38367 0.92175 1.25885 0.95133 1.02979 0.95164 1.70059 1.08758 1.36914 1.40801 0.85419 0.78456 0.79136 0.77879 1.19702 1.20426 1.19071 1.83091 1.19283 0.95066 1.54165 0.92641 0.91457 0.93222 0.92081 0.92310 0.92265 0.91603 0.87845 0.89655 0.81303 0.83336 0.76038 0.93068 0.93021 0.97278 0.97278 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.87 71.98 0.64 -1.12 16 2 C -0.09 -1.07 2.91 -10.79 -0.03 -1.10 16 3 C -0.14 -1.28 9.19 71.98 0.66 -0.61 16 4 C -0.05 -0.55 5.12 29.85 0.15 -0.40 16 5 C -0.17 -3.01 5.06 24.68 0.12 -2.88 16 6 C -0.15 -2.81 8.48 21.08 0.18 -2.63 16 7 C -0.05 -1.21 10.01 21.72 0.22 -0.99 16 8 C -0.30 -8.93 6.45 24.07 0.16 -8.77 16 9 C 0.58 22.14 7.78 86.42 0.67 22.81 16 10 O -0.58 -26.11 16.84 -4.35 -0.07 -26.19 16 11 N -0.72 -27.56 5.55 -467.20 -2.59 -30.16 16 12 C 0.14 6.33 5.61 86.38 0.48 6.81 16 13 C 0.02 1.17 5.09 29.85 0.15 1.32 16 14 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 18 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 S 0.22 4.78 22.10 -56.49 -1.25 3.53 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.71 6.36 -2.39 -0.02 0.69 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.40 13.86 7.59 -92.71 -0.70 13.16 16 35 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -67.64 341.60 2.83 -64.82 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.33 Total: 13.86 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.10 Total: -17.46 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.31 Total: -84.50 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.07 Total: -26.19 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.25 Total: 3.53 kcal Total: -67.64 2.83 -64.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935337991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.588 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds