Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46959 * 2 1 4 4 C 1.50705 * 109.46794 * 240.00369 * 2 1 3 5 5 O 1.21277 * 119.99910 * 265.10416 * 4 2 1 6 6 N 1.34779 * 120.00206 * 85.11371 * 4 2 1 7 7 C 1.46493 * 119.99944 * 180.27186 * 6 4 2 8 8 C 1.52999 * 109.46919 * 179.72078 * 7 6 4 9 9 C 1.50702 * 109.47006 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00137 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99720 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99726 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00431 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47381 * 89.99715 * 13 11 9 15 15 H 1.48493 * 109.47219 * 210.00096 * 13 11 9 16 16 H 1.48507 * 109.46766 * 329.99867 * 13 11 9 17 17 C 1.50698 * 109.47223 * 120.00264 * 2 1 3 18 18 C 1.38239 * 119.97392 * 52.09262 * 17 2 1 19 19 C 1.38201 * 120.02350 * 179.72310 * 18 17 2 20 20 C 1.38464 * 119.97472 * 0.52849 * 19 18 17 21 21 F 1.35092 * 120.02700 * 179.72589 * 20 19 18 22 22 C 1.38464 * 119.94377 * 359.74512 * 20 19 18 23 23 C 1.38193 * 119.97742 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46828 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46723 * 299.99656 * 1 2 3 26 26 H 1.09000 * 109.47317 * 60.00107 * 1 2 3 27 27 H 0.96696 * 114.00470 * 180.02562 * 3 2 1 28 28 H 0.97000 * 119.99658 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.47487 * 299.71996 * 7 6 4 30 30 H 1.09002 * 109.47308 * 59.72587 * 7 6 4 31 31 H 1.08999 * 109.47350 * 299.99843 * 8 7 6 32 32 H 1.09006 * 109.47430 * 60.00123 * 8 7 6 33 33 H 0.97000 * 120.00206 * 179.97438 * 12 11 9 34 34 H 1.07993 * 119.99028 * 359.97438 * 18 17 2 35 35 H 1.07994 * 120.01596 * 180.29723 * 19 18 17 36 36 H 1.08001 * 120.00927 * 179.97438 * 22 20 19 37 37 H 1.08004 * 119.98637 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.3189 -1.8876 -1.1767 6 7 2.1632 -0.0374 -2.3910 7 6 2.6458 -0.7294 -3.5886 8 6 2.6945 0.2531 -4.7604 9 6 3.1904 -0.4589 -5.9926 10 1 3.4448 -1.5074 -5.9448 11 6 3.3192 0.2283 -7.1810 12 7 3.7524 -0.3930 -8.2562 13 14 2.8797 2.0420 -7.2636 14 1 4.0806 2.8571 -6.9492 15 1 2.4001 2.3734 -8.6293 16 1 1.8091 2.3372 -6.2777 17 6 2.0324 -0.7105 1.2304 18 6 1.5690 -1.9769 1.5342 19 6 2.0333 -2.6317 2.6592 20 6 2.9547 -2.0143 3.4881 21 9 3.4051 -2.6512 4.5911 22 6 3.4138 -0.7435 3.1857 23 6 2.9525 -0.0931 2.0571 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.9703 1.4237 -0.0004 28 1 1.9337 0.9041 -2.4341 29 1 3.6450 -1.1233 -3.4029 30 1 1.9708 -1.5504 -3.8307 31 1 1.6953 0.6469 -4.9462 32 1 3.3695 1.0741 -4.5184 33 1 3.8426 0.0903 -9.0923 34 1 0.8469 -2.4565 0.8901 35 1 1.6748 -3.6230 2.8939 36 1 4.1323 -0.2608 3.8317 37 1 3.3102 0.8984 1.8213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -113.225137 kcal Electronic energy + Delta-G solvation = -21470.785494 eV Core-core repulsion = 17934.340985 eV Total energy + Delta-G solvation = -3536.444509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.09739 -40.72807 -38.68619 -36.87931 -35.12829 -32.81559 -32.47896 -31.22989 -30.29569 -29.19022 -25.57344 -24.16067 -23.19449 -22.05028 -20.84726 -20.06695 -18.57579 -17.80795 -17.03454 -16.83178 -16.47209 -15.78206 -15.48807 -15.27794 -14.85239 -14.22426 -14.17214 -13.97582 -13.88832 -13.38011 -13.35090 -12.91370 -12.65473 -12.59769 -12.54446 -12.32281 -11.95496 -11.53616 -11.26730 -11.24198 -11.01422 -10.44342 -10.31902 -9.99062 -9.50240 -9.35793 -9.25669 -8.79219 -8.70319 -8.61249 -6.14503 -4.15137 0.85247 1.02952 2.65362 3.15477 3.23004 3.31102 3.32105 3.54302 3.79837 4.03169 4.27166 4.34750 4.47063 4.65111 4.79054 4.83496 5.04848 5.18377 5.19367 5.42064 5.48387 5.64475 5.71692 5.82649 5.88744 6.01193 6.02327 6.12405 6.21875 6.48944 6.62613 6.64277 7.02624 7.13451 7.17531 7.62092 7.78399 8.35377 8.42623 8.89361 9.45394 10.98467 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032742 B = 0.003353 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.969904 B = 8349.505035 C = 8611.979139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.162 3.838 3 O -0.543 6.543 4 C 0.483 3.517 5 O -0.533 6.533 6 N -0.714 5.714 7 C 0.128 3.872 8 C -0.021 4.021 9 C -0.524 4.524 10 H 0.075 0.925 11 C 0.070 3.930 12 N -0.898 5.898 13 Si 0.882 3.118 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.266 1.266 17 C -0.113 4.113 18 C -0.049 4.049 19 C -0.155 4.155 20 C 0.099 3.901 21 F -0.142 7.142 22 C -0.156 4.156 23 C -0.080 4.080 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.383 0.617 28 H 0.402 0.598 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 2.743 22.823 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.117 3.883 3 O -0.350 6.350 4 C 0.266 3.734 5 O -0.410 6.410 6 N -0.364 5.364 7 C 0.006 3.994 8 C -0.059 4.059 9 C -0.563 4.563 10 H 0.094 0.906 11 C -0.133 4.133 12 N -0.536 5.536 13 Si 0.709 3.291 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.190 1.190 17 C -0.114 4.114 18 C -0.067 4.067 19 C -0.174 4.174 20 C 0.080 3.920 21 F -0.120 7.120 22 C -0.175 4.175 23 C -0.098 4.098 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.232 0.768 28 H 0.237 0.763 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.603 2.018 22.670 23.439 hybrid contribution 0.516 1.092 -0.098 1.211 sum -5.087 3.110 22.572 23.346 Atomic orbital electron populations 1.21783 0.89600 1.03585 1.04231 1.20202 0.96664 0.81623 0.89772 1.86585 1.27552 1.24160 1.96693 1.21026 0.79139 0.87958 0.85293 1.90719 1.49514 1.15706 1.85069 1.46323 1.65608 1.14434 1.10058 1.21568 0.98937 0.96194 0.82669 1.19792 0.97267 0.95253 0.93610 1.20907 1.44729 0.98537 0.92111 0.90647 1.25004 0.94398 0.98359 0.95498 1.69903 1.46195 1.36782 1.00723 0.86749 0.79277 0.85539 0.77509 1.20192 1.21243 1.19020 1.20073 0.98866 0.95805 0.96652 1.20829 0.98186 0.93049 0.94618 1.21142 0.98986 1.01395 0.95866 1.17768 0.97159 0.92024 0.85082 1.91492 1.87899 1.81748 1.50887 1.21047 1.02788 0.94143 0.99521 1.20768 0.95612 0.99929 0.93479 0.90181 0.90420 0.90607 0.76799 0.76349 0.91880 0.91813 0.95941 0.96387 0.92503 0.84578 0.84549 0.84627 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.54 37.16 0.32 -0.99 16 2 C 0.16 1.83 1.16 -92.92 -0.11 1.72 16 3 O -0.54 -5.31 11.50 -35.23 -0.41 -5.71 16 4 C 0.48 7.26 6.68 -10.98 -0.07 7.18 16 5 O -0.53 -9.85 15.23 5.56 0.08 -9.76 16 6 N -0.71 -11.12 5.47 -60.30 -0.33 -11.45 16 7 C 0.13 2.52 5.61 -4.05 -0.02 2.50 16 8 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 9 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 10 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 13 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 17 C -0.11 -1.27 4.56 -104.62 -0.48 -1.74 16 18 C -0.05 -0.55 8.01 -39.59 -0.32 -0.87 16 19 C -0.16 -1.66 10.03 -39.51 -0.40 -2.05 16 20 C 0.10 1.09 7.30 -39.41 -0.29 0.80 16 21 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 22 C -0.16 -1.53 10.03 -39.51 -0.40 -1.93 16 23 C -0.08 -0.78 9.24 -39.59 -0.37 -1.14 16 24 H 0.08 0.73 6.99 -51.93 -0.36 0.37 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.38 2.80 7.74 45.56 0.35 3.15 16 28 H 0.40 5.46 7.91 -40.82 -0.32 5.13 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 32 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.14 1.47 6.96 -52.49 -0.37 1.11 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.14 0.99 6.43 -52.48 -0.34 0.65 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -32.30 317.87 -6.31 -38.61 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.93 Total: 5.36 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.67 Total: -10.06 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.44 Total: -37.75 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.32 Total: -15.48 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.30 -6.31 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.613 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds