Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46959 * 2 1 4 4 C 1.50705 * 109.46794 * 240.00369 * 2 1 3 5 5 O 1.21277 * 119.99910 * 265.10416 * 4 2 1 6 6 N 1.34779 * 120.00206 * 85.11371 * 4 2 1 7 7 C 1.46493 * 119.99944 * 180.27186 * 6 4 2 8 8 C 1.52999 * 109.46919 * 179.72078 * 7 6 4 9 9 C 1.50702 * 109.47006 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00137 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99720 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99726 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00431 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47381 * 89.99715 * 13 11 9 15 15 H 1.48493 * 109.47219 * 210.00096 * 13 11 9 16 16 H 1.48507 * 109.46766 * 329.99867 * 13 11 9 17 17 C 1.50698 * 109.47223 * 120.00264 * 2 1 3 18 18 C 1.38239 * 119.97392 * 52.09262 * 17 2 1 19 19 C 1.38201 * 120.02350 * 179.72310 * 18 17 2 20 20 C 1.38464 * 119.97472 * 0.52849 * 19 18 17 21 21 F 1.35092 * 120.02700 * 179.72589 * 20 19 18 22 22 C 1.38464 * 119.94377 * 359.74512 * 20 19 18 23 23 C 1.38193 * 119.97742 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46828 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46723 * 299.99656 * 1 2 3 26 26 H 1.09000 * 109.47317 * 60.00107 * 1 2 3 27 27 H 0.96696 * 114.00470 * 180.02562 * 3 2 1 28 28 H 0.97000 * 119.99658 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.47487 * 299.71996 * 7 6 4 30 30 H 1.09002 * 109.47308 * 59.72587 * 7 6 4 31 31 H 1.08999 * 109.47350 * 299.99843 * 8 7 6 32 32 H 1.09006 * 109.47430 * 60.00123 * 8 7 6 33 33 H 0.97000 * 120.00206 * 179.97438 * 12 11 9 34 34 H 1.07993 * 119.99028 * 359.97438 * 18 17 2 35 35 H 1.07994 * 120.01596 * 180.29723 * 19 18 17 36 36 H 1.08001 * 120.00927 * 179.97438 * 22 20 19 37 37 H 1.08004 * 119.98637 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.3189 -1.8876 -1.1767 6 7 2.1632 -0.0374 -2.3910 7 6 2.6458 -0.7294 -3.5886 8 6 2.6945 0.2531 -4.7604 9 6 3.1904 -0.4589 -5.9926 10 1 3.4448 -1.5074 -5.9448 11 6 3.3192 0.2283 -7.1810 12 7 3.7524 -0.3930 -8.2562 13 14 2.8797 2.0420 -7.2636 14 1 4.0806 2.8571 -6.9492 15 1 2.4001 2.3734 -8.6293 16 1 1.8091 2.3372 -6.2777 17 6 2.0324 -0.7105 1.2304 18 6 1.5690 -1.9769 1.5342 19 6 2.0333 -2.6317 2.6592 20 6 2.9547 -2.0143 3.4881 21 9 3.4051 -2.6512 4.5911 22 6 3.4138 -0.7435 3.1857 23 6 2.9525 -0.0931 2.0571 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.9703 1.4237 -0.0004 28 1 1.9337 0.9041 -2.4341 29 1 3.6450 -1.1233 -3.4029 30 1 1.9708 -1.5504 -3.8307 31 1 1.6953 0.6469 -4.9462 32 1 3.3695 1.0741 -4.5184 33 1 3.8426 0.0903 -9.0923 34 1 0.8469 -2.4565 0.8901 35 1 1.6748 -3.6230 2.8939 36 1 4.1323 -0.2608 3.8317 37 1 3.3102 0.8984 1.8213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935338115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -136.695410 kcal Electronic energy + Delta-G solvation = -21471.803241 eV Core-core repulsion = 17934.340985 eV Total energy + Delta-G solvation = -3537.462256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.94150 -41.73453 -39.71003 -37.76980 -36.68679 -34.77246 -33.30578 -32.03808 -31.99648 -30.05703 -27.18802 -25.27460 -23.98042 -23.21956 -22.48690 -21.13887 -19.53071 -18.96210 -18.72740 -17.84605 -17.33385 -16.80241 -16.63554 -16.55386 -16.18961 -15.69720 -15.38516 -15.26406 -14.67882 -14.60150 -14.50582 -14.13111 -13.90502 -13.42752 -13.35840 -13.32992 -13.17255 -13.02855 -12.81346 -12.19766 -12.17645 -12.01125 -11.85646 -11.76323 -11.50882 -10.78936 -10.61698 -10.08923 -10.07542 -9.63912 -8.30281 -6.37765 0.02622 0.25687 1.39943 1.42350 1.46401 1.53641 2.07228 2.36989 2.61926 3.01390 3.05039 3.23087 3.42803 3.65393 3.74171 3.92388 4.03835 4.29225 4.33892 4.40713 4.44417 4.68206 4.74273 4.76335 4.90841 4.93660 5.08382 5.11908 5.14398 5.22125 5.39303 5.40916 5.43114 5.62995 5.85299 6.21277 6.34257 6.62876 6.71146 7.18148 7.27158 8.86507 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032742 B = 0.003353 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.969904 B = 8349.505035 C = 8611.979139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.179 3.821 3 O -0.538 6.538 4 C 0.482 3.518 5 O -0.570 6.570 6 N -0.705 5.705 7 C 0.144 3.856 8 C -0.013 4.013 9 C -0.540 4.540 10 H 0.028 0.972 11 C 0.004 3.996 12 N -0.951 5.951 13 Si 0.959 3.041 14 H -0.264 1.264 15 H -0.288 1.288 16 H -0.236 1.236 17 C -0.126 4.126 18 C -0.062 4.062 19 C -0.163 4.163 20 C 0.084 3.916 21 F -0.147 7.147 22 C -0.156 4.156 23 C -0.078 4.078 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.395 0.605 28 H 0.416 0.584 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.268 0.732 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.960 5.683 24.568 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.134 3.866 3 O -0.346 6.346 4 C 0.268 3.732 5 O -0.450 6.450 6 N -0.357 5.357 7 C 0.020 3.980 8 C -0.050 4.050 9 C -0.578 4.578 10 H 0.047 0.953 11 C -0.193 4.193 12 N -0.591 5.591 13 Si 0.781 3.219 14 H -0.189 1.189 15 H -0.214 1.214 16 H -0.159 1.159 17 C -0.128 4.128 18 C -0.080 4.080 19 C -0.182 4.182 20 C 0.064 3.936 21 F -0.126 7.126 22 C -0.174 4.174 23 C -0.096 4.096 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.246 0.754 28 H 0.253 0.747 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.176 0.824 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.322 4.978 24.455 25.745 hybrid contribution 0.789 0.056 -0.619 1.005 sum -5.533 5.033 23.836 24.982 Atomic orbital electron populations 1.21852 0.88358 1.04025 1.05175 1.19975 0.97411 0.81766 0.87444 1.86591 1.28862 1.22736 1.96436 1.21807 0.77851 0.87595 0.85970 1.90708 1.50888 1.17638 1.85718 1.46065 1.65616 1.14952 1.09049 1.21058 0.97763 0.95406 0.83754 1.19647 0.97829 0.95528 0.92024 1.21261 1.44723 0.97063 0.94759 0.95327 1.26086 0.94120 1.04336 0.94761 1.70077 1.48018 1.39346 1.01671 0.85545 0.80113 0.78164 0.78102 1.18928 1.21361 1.15915 1.20196 0.99638 0.95950 0.96966 1.20919 0.98645 0.93520 0.94921 1.21304 0.99060 1.02022 0.95776 1.18009 0.97639 0.92756 0.85155 1.91477 1.87994 1.81962 1.51144 1.21347 1.02711 0.93613 0.99739 1.21082 0.94685 1.00949 0.92898 0.90135 0.88755 0.90343 0.75372 0.74700 0.93674 0.93677 0.94562 0.94556 0.92327 0.84835 0.83474 0.82409 0.81931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.54 71.98 0.62 -1.72 16 2 C 0.18 3.60 1.16 -12.28 -0.01 3.59 16 3 O -0.54 -8.54 11.50 -148.98 -1.71 -10.26 16 4 C 0.48 13.86 6.68 87.66 0.59 14.44 16 5 O -0.57 -21.03 15.23 -3.02 -0.05 -21.08 16 6 N -0.71 -20.72 5.47 -463.07 -2.53 -23.26 16 7 C 0.14 5.64 5.61 86.38 0.48 6.12 16 8 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 9 C -0.54 -30.35 9.66 25.60 0.25 -30.11 16 10 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 11 C 0.00 0.23 5.47 84.66 0.46 0.70 16 12 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 13 Si 0.96 41.67 27.47 68.60 1.88 43.55 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 17 C -0.13 -2.59 4.56 -19.86 -0.09 -2.68 16 18 C -0.06 -1.35 8.01 22.26 0.18 -1.17 16 19 C -0.16 -3.37 10.03 22.31 0.22 -3.15 16 20 C 0.08 1.73 7.30 22.38 0.16 1.90 16 21 F -0.15 -3.21 17.27 44.97 0.78 -2.44 16 22 C -0.16 -2.69 10.03 22.31 0.22 -2.46 16 23 C -0.08 -1.31 9.24 22.26 0.21 -1.11 16 24 H 0.08 1.36 6.99 -2.39 -0.02 1.34 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.40 4.21 7.74 -74.06 -0.57 3.63 16 28 H 0.42 9.97 7.91 -92.71 -0.73 9.24 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.48 7.20 -2.39 -0.02 1.46 16 32 H 0.04 1.45 7.57 -2.38 -0.02 1.43 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.13 2.88 6.96 -2.91 -0.02 2.86 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.16 1.73 6.43 -2.91 -0.02 1.71 16 Total: -1.00 -71.53 317.87 1.83 -69.70 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.25 Total: 18.40 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 3.41 Total: -16.06 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.23 Total: -81.82 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.76 Total: -31.33 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.55 kcal Total: -71.53 1.83 -69.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.997 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds