Wall clock time and date at job start Tue Mar 31 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46874 * 2 1 4 4 C 1.50698 * 109.46867 * 119.99450 * 2 1 3 5 5 O 1.21279 * 119.99962 * 95.32264 * 4 2 1 6 6 N 1.34779 * 120.00255 * 275.31980 * 4 2 1 7 7 C 1.46502 * 120.00091 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47300 * 179.97438 * 7 6 4 9 9 C 1.50693 * 109.47143 * 179.97438 * 8 7 6 10 10 H 1.08007 * 120.00230 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00019 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00008 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00036 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46853 * 60.00179 * 13 11 9 15 15 H 1.48498 * 109.46775 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47156 * 300.00179 * 13 11 9 17 17 C 1.50693 * 109.47385 * 239.99945 * 2 1 3 18 18 C 1.38251 * 119.97135 * 307.39792 * 17 2 1 19 19 C 1.38201 * 120.02333 * 179.72840 * 18 17 2 20 20 C 1.38461 * 119.97168 * 0.56380 * 19 18 17 21 21 F 1.35102 * 120.02357 * 179.68640 * 20 19 18 22 22 C 1.38460 * 119.94998 * 359.71097 * 20 19 18 23 23 C 1.38200 * 119.97514 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47370 * 300.00038 * 1 2 3 25 25 H 1.08996 * 109.47174 * 60.00343 * 1 2 3 26 26 H 1.09004 * 109.46977 * 180.02562 * 1 2 3 27 27 H 0.96696 * 114.00021 * 180.02562 * 3 2 1 28 28 H 0.96998 * 120.00195 * 359.72444 * 6 4 2 29 29 H 1.08999 * 109.46836 * 300.00549 * 7 6 4 30 30 H 1.09005 * 109.46777 * 60.00353 * 7 6 4 31 31 H 1.08996 * 109.47258 * 300.00269 * 8 7 6 32 32 H 1.09005 * 109.46795 * 60.00514 * 8 7 6 33 33 H 0.96999 * 120.00149 * 180.02562 * 12 11 9 34 34 H 1.08000 * 119.98728 * 359.97438 * 18 17 2 35 35 H 1.07998 * 120.01220 * 180.25270 * 19 18 17 36 36 H 1.08001 * 120.01178 * 179.97438 * 22 20 19 37 37 H 1.07996 * 119.98523 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3263 -1.8856 1.1748 6 7 2.1549 -0.0395 2.3931 7 6 2.6437 -0.7299 3.5892 8 6 2.6881 0.2514 4.7622 9 6 3.1903 -0.4589 5.9926 10 1 3.4521 -1.5056 5.9429 11 6 3.3156 0.2273 7.1819 12 7 2.9964 1.5016 7.2426 13 14 3.9388 -0.6531 8.7071 14 1 5.3035 -1.1801 8.4514 15 1 3.9806 0.2991 9.8458 16 1 3.0273 -1.7782 9.0364 17 6 2.0324 -0.7104 -1.2304 18 6 1.5769 -1.9812 -1.5286 19 6 2.0326 -2.6314 -2.6597 20 6 2.9546 -2.0143 -3.4881 21 9 3.4056 -2.6516 -4.5907 22 6 3.4144 -0.7438 -3.1853 23 6 2.9523 -0.0929 -2.0572 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9702 1.4237 -0.0004 28 1 1.9236 0.9015 2.4368 29 1 1.9746 -1.5557 3.8309 30 1 3.6454 -1.1167 3.4015 31 1 3.3574 1.0770 4.5201 32 1 1.6866 0.6387 4.9500 33 1 3.0849 1.9845 8.0792 34 1 0.8616 -2.4643 -0.8794 35 1 1.6736 -3.6225 -2.8946 36 1 4.1339 -0.2617 -3.8306 37 1 3.3111 0.8978 -1.8207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:48 Heat of formation + Delta-G solvation = -117.465692 kcal Electronic energy + Delta-G solvation = -21412.633165 eV Core-core repulsion = 17876.004772 eV Total energy + Delta-G solvation = -3536.628393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.06654 -40.65771 -38.61548 -36.80312 -34.98985 -32.85857 -32.41371 -31.18930 -29.88851 -29.03655 -25.36978 -24.13742 -23.15760 -22.12029 -20.93922 -20.01088 -18.52321 -17.76751 -16.88666 -16.47026 -16.41111 -15.75151 -15.34883 -15.17326 -14.81766 -14.53994 -14.06721 -13.84707 -13.79301 -13.29867 -13.27823 -12.78913 -12.53666 -12.49503 -12.33016 -12.24094 -11.88276 -11.26299 -11.20069 -11.06464 -10.94690 -10.69363 -10.37519 -9.81315 -9.47549 -9.30059 -9.18039 -8.74306 -8.61533 -8.41233 -6.12306 -4.15734 0.89269 1.06763 2.73612 3.21642 3.28911 3.33089 3.36247 3.61763 3.87579 4.06801 4.32937 4.38727 4.51454 4.68677 4.88828 4.90233 5.09297 5.23857 5.24597 5.48676 5.54749 5.68518 5.76012 5.88962 5.92530 6.05332 6.24263 6.26303 6.27423 6.66097 6.67157 6.80418 7.17578 7.47233 7.56752 7.84807 7.90994 8.22635 8.48943 8.89890 9.49315 10.99130 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032079 B = 0.003183 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.622888 B = 8795.997053 C = 9111.247172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.161 3.839 3 O -0.542 6.542 4 C 0.482 3.518 5 O -0.538 6.538 6 N -0.709 5.709 7 C 0.120 3.880 8 C 0.013 3.987 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.112 4.112 18 C -0.048 4.048 19 C -0.156 4.156 20 C 0.098 3.902 21 F -0.142 7.142 22 C -0.156 4.156 23 C -0.080 4.080 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.383 0.617 28 H 0.404 0.596 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -1.535 -20.149 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.117 3.883 3 O -0.349 6.349 4 C 0.265 3.735 5 O -0.415 6.415 6 N -0.359 5.359 7 C -0.002 4.002 8 C -0.024 4.024 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.113 4.113 18 C -0.066 4.066 19 C -0.175 4.175 20 C 0.079 3.921 21 F -0.121 7.121 22 C -0.175 4.175 23 C -0.098 4.098 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.232 0.768 28 H 0.238 0.762 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.844 -2.118 -20.064 20.539 hybrid contribution 1.004 -0.215 0.757 1.275 sum -2.841 -2.333 -19.307 19.654 Atomic orbital electron populations 1.21779 0.89645 1.03503 1.04261 1.20199 0.96656 0.81679 0.89764 1.86592 1.27538 1.24094 1.96686 1.21028 0.79216 0.87929 0.85355 1.90702 1.49754 1.15902 1.85189 1.46335 1.65062 1.14685 1.09848 1.21787 0.98112 0.96745 0.83570 1.19313 0.97946 0.94203 0.90935 1.21003 1.44566 0.96743 0.93978 0.92324 1.24992 0.95257 0.94880 0.99079 1.69940 1.48047 1.08294 1.26913 0.86570 0.79520 0.79372 0.82068 1.20096 1.21206 1.20098 1.20096 0.98821 0.95715 0.96682 1.20831 0.98205 0.93059 0.94553 1.21134 0.99098 1.01432 0.95803 1.17766 0.97177 0.92054 0.85110 1.91492 1.87881 1.81734 1.50970 1.21045 1.02805 0.94128 0.99541 1.20777 0.95549 0.99967 0.93480 0.90529 0.90465 0.90271 0.76810 0.76160 0.92427 0.92512 0.95899 0.95882 0.92732 0.84591 0.84599 0.84645 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.55 37.16 0.32 -1.08 16 2 C 0.16 1.93 1.15 -92.93 -0.11 1.83 16 3 O -0.54 -5.76 11.52 -35.23 -0.41 -6.17 16 4 C 0.48 7.60 6.68 -10.99 -0.07 7.53 16 5 O -0.54 -10.22 15.19 5.56 0.08 -10.14 16 6 N -0.71 -11.82 5.47 -60.29 -0.33 -12.15 16 7 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 8 C 0.01 0.33 5.09 -27.89 -0.14 0.18 16 9 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 10 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 13 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.11 -1.31 4.56 -104.62 -0.48 -1.79 16 18 C -0.05 -0.57 8.00 -39.59 -0.32 -0.88 16 19 C -0.16 -1.71 10.03 -39.51 -0.40 -2.11 16 20 C 0.10 1.11 7.30 -39.42 -0.29 0.82 16 21 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 22 C -0.16 -1.59 10.03 -39.51 -0.40 -1.99 16 23 C -0.08 -0.82 9.24 -39.59 -0.37 -1.18 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.77 7.01 -51.93 -0.36 0.41 16 27 H 0.38 3.13 7.74 45.56 0.35 3.48 16 28 H 0.40 6.09 7.91 -40.82 -0.32 5.76 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.14 1.53 6.97 -52.49 -0.37 1.17 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.07 6.43 -52.49 -0.34 0.73 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -31.47 321.47 -6.69 -38.16 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.96 Total: 5.35 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.68 Total: -9.32 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.41 Total: -37.24 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.32 Total: -16.31 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.47 -6.69 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.307 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds